Fine mapping of the epistatic suppressor gene (esp) of a recessive genic male sterility in rapeseed (Brassica napus L.)

Genome

Volumn 52, Issue 9, 2009, Pages 755-760

  Xu, Zhenghua ^a   Xie, Yanzhou ^a   Hong, Dengfeng ^a   Liu, Pingwu ^a   Yang, Guangsheng ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

Author keywords

Epistatic suppressor gene; Fine mapping; Map based cloning; Recessive genic male sterility

Indexed keywords

PLANT DNA;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; ARTICLE; CHROMOSOME MAP; GENETIC MARKER; GENETICS; METHODOLOGY; PLANT CHROMOSOME; PLANT GENE; PLANT INFERTILITY; POLYMERASE CHAIN REACTION; RAPESEED; RECESSIVE GENE;

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM ANALYSIS; BRASSICA NAPUS; CHROMOSOME MAPPING; CHROMOSOMES, PLANT; DNA, PLANT; GENES, PLANT; GENES, RECESSIVE; GENETIC MARKERS; PLANT INFERTILITY; POLYMERASE CHAIN REACTION;

BRASSICA NAPUS;

EID: 70349696001     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G09-049     Document Type: Article

References (36)

1. Brugmans, B., van der Hulst, R.G., Visser, R.G., Lindhout, P., and van Eck, H.J. 2003. A new and versatile method for the successful conversion of AFLP markers into simple single locus markers. Nucleic Acids Res. 31(10): e55. doi:10.1093/nar/gng055. PMID:12736321.
2. Chen, F.X., Hu, B.C., Li, C., Li, Q.S., Chen, W.S., and Zhang, M.L. 1998. Genetic studies on GMS in Brassica napus L: I. Inheritance of recessive GMS line 9012A. Acta Agron. Sin. 24(4): 431-438.
3. Chen, F.X., Hu, B.C., Li, Q.S., Hou, S.M., Wu, X.J., and Fei, W.X. 2002. The breeding of the recessive epistatically genic male sterile hybrid rapeseed - Wanyou 18 with double low. J. Anhui Agric. Sci. 30(4): 535-537. [In Chinese.]
4. Chen, F.X., Hu, B.C., Li, Q.S., Hou, S.M., Wu, X.J., Fei, W.X., et al. 2003. Breeding of Wanyou 14, a recessive epistatically genic male sterile hybrid rapeseed (Brassica napus) with double low. Chin. J. Oil Crop Sci. 25(1): 63-68. [In Chinese.]
5. Chi, X.F., Lou, X.Y., and Shu, Q.Y. 2008. Progressive fine mapping in experimental populations: an improved strategy toward positional cloning. J. Theor. Biol. 253(4): 817-823. doi:10.1016/j.jtbi.2008.04.026.PMID:18533192.
6. Choi, S.R., Teakle, G.R., Plaha, P., Kim, J.H., Allender, C.J., Beynon, E., et al. 2007. The reference genetic linkage map for the multinational Brassica rapa genome sequencing project. Theor. Appl. Genet. 115(6): 777-792. doi:10.1007/s00122-007-0608-z.PMID:17646962.
7. Doyle, J.J., and Doyle, J.L. 1990. Isolation of plant DNA from fresh tissue. Focus, 12: 13-15.
8. Fu, T.D., and Tu, J.X. 2002. Present situation and prospects on the research and utilization of hybrid rapeseed. In Analects of crop breeding. Edited by H.L. Liu. China Agricultural University Press, Beijing. pp. 235-250. [In Chinese.]
9. He, C., Sayed-Tabatabaei, B.E., and Komatsuda, T. 2004. AFLP targeting of the 1-cM region conferring the vrs1 gene for six-rowed spike in barley, Hordeum vulgare L. Genome, 47(6): 1122-1129. doi:10.1139/g04-073. PMID:15644970.
10. He, J., Ke, L., Hong, D., Xie, Y., Wang, G., Liu, P., and Yang, G. 2008. Fine mapping of a recessive genic male sterility gene (Bnms3) in rapeseed (Brassica napus) with AFLP- and Arabidopsis-derived PCR markers. Theor. Appl. Genet. 117(1): 11-18. doi:10.1007/s00122-008-0747-x. PMID:18369585.
11. Huang, Z., Chen, Y., Yi, B., Xiao, L., Ma, C., Tu, J., and Fu, T. 2007. Fine mapping of the recessive genic male sterility gene (Bnms3) in Brassica napus L. Theor. Appl. Genet. 115(1): 113-118. doi:10.1007/s00122-007-0547-8. PMID:17479242.
12. Ke, L.P., Sun, Y.Q., Hong, D.F., Liu, P.W., and Yang, G.S. 2005. Identification of AFLP markers linked to one recessive genic male sterility gene in oilseed rape, Brassica napus. Plant Breed. 124(4): 367-370. doi:10.1111/j.1439-0523.2005.01115.x.
13. Kim, J.S., Chung, T.Y., King, G.J., Jin, M., Yang, T.J., Jin, Y.M., et al. 2006. A sequence-tagged linkage map of Brassica rapa. Genetics, 174(1): 29-39. doi:10.1534/genetics.106.060152.PMID:16988107.
14. Komatsuda, T., Pourkheirandish, M., He, C., Azhaguvel, P., Kanamori, H., Perovic, D., et al. 2007. Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene. Proc. Natl. Acad. Sci. U.S.A. 104(4): 1424-1429. doi:10.1073/pnas.0608580104. PMID:17220272.
15. Lander, E.S., Green, P., Abrahamson, J., Barlow, A., Daly, M.J., Lincoln, S.E., et al. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1(2): 174-181. doi:10.1016/0888-7543(87)90010-3. PMID:3692487.
16. Li, L., and Garvin, D.F. 2003. Molecular mapping of Or, a gene inducing beta-carotene accumulation in cauliflower (Brassica oleracea L. var. botrytis). Genome, 46(4): 588-594. doi:10.1139/g03-043. PMID:12897867.
17. Li, L., Lu, S., O'Halloran, D.M., Garvin, D.F., and Vrebalov, J. 2003. High-resolution genetic and physical mapping of the cauliflower high-beta-carotene gene Or (Orange). Mol. Genet. Genomics, 270(2): 132-138. doi:10.1007/s00438-003-0904-5.PMID:12908106.
18. Liu, R.H., and Meng, J.L. 2003. MapDraw: a Microsoft Excel macro for drawing genetic linkage maps based on given genetic linkage data. Yi Chuan, 25(3): 317-321. [In Chinese.] PMID:15639879.
19. Lu, S., Van Eck, J., Zhou, X., Lopez, A.B., O'Halloran, D.M., Cosman, K.M., et al. 2006. The cauliflower Or gene encodes a DnaJ cysteine-rich domain-containing protein that mediates high levels of beta-carotene accumulation. Plant Cell, 18(12): 3594-3605. doi:10.1105/tpc.106.046417. PMID:17172359.
20. Michelmore, R.W., Paran, I., and Kesseli, R.V. 1991. Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. Proc. Natl. Acad. Sci. U.S.A. 88(21): 9828-9832. doi:10.1073/pnas.88.21.9828.PMID:1682921.
21. Muangprom, A., and Osborn, T.C. 2004. Characterization of a dwarf gene in Brassica rapa, including the identification of a candidate gene. Theor. Appl. Genet. 108(7): 1378-1384. doi:10.1007/s00122-003-1551-2. PMID:14727029.
22. Muangprom, A., Thomas, S.G., Sun, T.P., and Osborn, T.C. 2005. A novel dwarfing mutation in a green revolution gene from Brassica rapa. Plant Physiol. 137(3): 931-938. doi:10.1104/pp.104.057646. PMID:15734906.
23. Mun, J.H., Kwon, S.J., Yang, T.J., Kim, H.S., Choi, B.S., Baek, S., et al. 2008. The first generation of a BAC-based physical map of Brassica rapa. BMC Genomics, 9(1): 280. doi:10.1186/1471-2164-9-280. PMID:18549474.
24. Parkin, I.A.P., Sharpe, A.G., Keith, D.J., and Lydiate, D.J. 1995. Identification of the A and C genomes of amphidiploid Brassica napus (oilseed rape). Genome, 38(6): 1122-1131. doi:10.1139/g95-149. PMID:18470236.
25. Perez-Prat, E., and van Lookeren Campagne, M.M. 2002. Hybrid seed production and the challenge of propagating male-sterile plants. Trends Plant Sci. 7(5): 199-203. doi:10.1016/S1360-1385(02)02252-5. PMID:11992824.
26. Peters, J.L., Cnudde, F., and Gerats, T. 2003. Forward genetics and map-based cloning approaches. Trends Plant Sci. 8(10): 484-491. doi:10.1016/j.tplants.2003.09.002. PMID:14557045.
27. Piquemal, J., Cinquin, E., Couton, F., Rondeau, C., Seignoret, E., Doucet, I., et al. 2005. Construction of an oilseed rape (Brassica napus L.) genetic map with SSR markers. Theor. Appl. Genet. 111(8): 1514-1523. doi:10.1007/s00122-005-0080-6. PMID:16187118.
28. Qiu, D., Morgan, C., Shi, J., Long, Y., Liu, J., Li, R., et al. 2006. A comparative linkage map of oilseed rape and its use for QTL analysis of seed oil and erucic acid content. Theor. Appl. Genet. 114(1):67-80. doi:10.1007/s00122-006-0411-2. PMID:17033785.
29. Siebert, P.D., Chenchik, A., Kellogg, D.E., Lukyanov, K.A., and Lukyanov, S.A. 1995. An improved PCR method for walking in uncloned genomic DNA. Nucleic Acids Res. 23(6): 1087-1088.doi:10.1093/nar/23.6.1087.PMID:7731798.
30. Song, L.Q., Fu, T.D., Tu, J.X., Ma, C.Z., and Yang, G.S. 2006. Molecular validation of multiple allele inheritance for dominant genic male sterility gene in Brassica napus L. Theor. Appl. Genet. 113(1): 55-62. doi:10.1007/s00122-006-0271-9. PMID:16783591.
31. Suwabe, K., Morgan, C., and Bancroft, I. 2008. Integration of Brassica A genome genetic linkage map between Brassica napus and B. rapa. Genome, 51(3): 169-176. doi:10.1139/g07-113. PMID:18356952.
32. Tanksley, S.D., Ganal, M.W., and Martin, G.B. 1995. Chromosome landing: a paradigm for map-based gene cloning in plants with large genomes. Trends Genet. 11(2): 63-68. doi:10.1016/S0168-9525(00)88999-4. PMID:7716809.
33. U, N. 1935. Genome analysis in Brassica with special reference to the experimental formation of B. napus and peculiar mode of fertilisation. Jpn. J. Bot. 7: 389-452.
34. Xiao, L., Yi, B., Chen, Y.F., Huang, Z., Chen, W., Ma, C.Z., et al. 2008. Molecular markers linked to Bn;rf: a recessive epistatic inhibitor gene of recessive genic male sterility in Brassica napus L. Euphytica, 164(2): 377-384. doi:10.1007/s10681-008-9679-4.
35. Xie, Y.Z., Hong, D.F., Xu, Z.H., Liu, P.W., and Yang, G.S. 2008. Identification of AFLP markers linked to the epistatic suppressor gene of a recessive genic male sterility in rapeseed and conversion to SCAR markers. Plant Breed. 127(2): 145-149. doi:10.1111/j.1439-0523.2007.01437.x.
36. Yi, B., Chen, Y., Lei, S., Tu, J., and Fu, T. 2006. Fine mapping of the recessive genic male-sterile gene (Bnms1) in Brassica napus L. Theor. Appl. Genet. 113(4): 643-650. doi:10.1007/s00122-006-0328-9. PMID:16804725.