Proteomics computational analyses suggest that the bornavirus glycoprotein is a class III viral fusion protein ( penetrene)

Virology Journal

Volumn 6, Issue , 2009, Pages

  Garry, Courtney E ^a   Garry, Robert F ^a  

^a TULANE UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FURIN; GLYCOPROTEIN; PROTEIN SUBUNIT; PROTEINASE; SUBTILISIN; VIRUS FUSION PROTEIN;

ARTICLE; BACULOVIRUS; BORNA DISEASE VIRUS; HERPES VIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN CLEAVAGE; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN LOCALIZATION; PROTEIN MOTIF; PROTEIN PROCESSING; PROTEIN STRUCTURE; PROTEOMICS; RHABDOVIRUS; AMINO ACID SEQUENCE; CHEMICAL STRUCTURE; CHEMISTRY; CLASSIFICATION; GENETICS; MOLECULAR GENETICS; PHYLOGENY;

ANIMALIA; BACULOVIRIDAE; BORNA DISEASE VIRUS; BORNAVIRIDAE; BORNAVIRUS; EQUIDAE; HERPESVIRIDAE; OVIS ARIES; RHABDOVIRIDAE; VESICULAR STOMATITIS VIRUS;

AMINO ACID SEQUENCE; BORNA DISEASE VIRUS; BORNAVIRIDAE; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEOMICS; VIRAL FUSION PROTEINS;

EID: 70349671029     PISSN: None     EISSN: 1743422X     Source Type: Journal    
DOI: 10.1186/1743-422X-6-145     Document Type: Article

References (49)

1. The biology of bornavirus. H Ludwig, APMIS Suppl 2008 124 14 20 10.1111/j.1600-0463.2008.000m2.x 18771093
2. Recovery of divergent avian bornaviruses from cases of proventricular dilatation disease: identification of a candidate etiologic agent. AL Kistler A Gancz S Clubb P Skewes-Cox K Fischer K Sorber CY Chiu A Lublin S Mechani Y Farnoushi, et al. Virol J 2008 5 88 10.1186/1743-422X-5-88 18671869
3. Experimental induction of proventricular dilatation disease in cockatiels (Nymphicus hollandicus) inoculated with brain homogenates containing avian bornavirus 4. AY Gancz AL Kistler AL Greninger Y Farnoushi S Mechani S Perl A Berkowitz N Perez S Clubb JL DeRisi, et al. Virol J 2009 6 100 10.1186/1743-422X-6-100 19589169
4. Borna disease virus: implications for human neuropsychiatric illness. WI Lipkin A Schneemann MV Solbrig, Trends Microbiol 1995 3 2 64 69 10.1016/S0966-842X(00)88877-0 7728387
5. Human Borna disease virus-infection and its therapy in affective disorders. DE Dietrich L Bode, APMIS Suppl 2008 124 61 65 10.1111/j.1600-0463. 2008.00m10.x 18771101
6. Molecular biology of Borna disease virus. T Briese WI Lipkin JC de la Torre, Curr Top Microbiol Immunol 1995 190 1 16 7789146
7. Molecular biology of Borna disease virus and persistence. JC de la Torre, Front Biosci 2002 7 569 579 10.2741/torre 11815302
8. Pathogenesis of Borna disease in rats: evidence that intra-axonal spread is the major route for virus dissemination and the determinant for disease incubation. KM Carbone CS Duchala JW Griffin AL Kincaid O Narayan, J Virol 1987 61 11 3431 3440 2444715
9. Cell-to-cell spread of Borna disease virus proceeds in the absence of the virus primary receptor and furin-mediated processing of the virus surface glycoprotein. R Clemente JC de la Torre, J Virol 2007 81 11 5968 5977 10.1128/JVI.02426-06 17376904
10. Mechanism of Borna disease virus entry into cells. D Gonzalez-Dunia B Cubitt JC de la Torre, J Virol 1998 72 1 783 788 9420287
11. Processing of the Borna disease virus glycoprotein gp94 by the subtilisin-like endoprotease furin. JA Richt T Furbringer A Koch I Pfeuffer C Herden I Bause-Niedrig W Garten, J Virol 1998 72 5 4528 4533 9557754
12. Identification of the amino terminal subunit of the glycoprotein of Borna disease virus. S Kiermayer I Kraus JA Richt W Garten M Eickmann, FEBS Lett 2002 531 2 255 258 10.1016/S0014-5793(02)03513-5 12417322
13. Maturation of Borna disease virus glycoprotein. M Eickmann S Kiermayer I Kraus M Gossl JA Richt W Garten, FEBS Lett 2005 579 21 4751 4756 10.1016/j.febslet.2005.07.052 16098520
14. Inhibition of Borna disease virus-mediated cell fusion by monoclonal antibodies directed against the viral glycoprotein. E Furrer O Planz L Stitz, Intervirology 2004 47 2 108 113 10.1159/000077834 15192275
15. N-terminal domain of Borna disease virus G (p56) protein is sufficient for virus receptor recognition and cell entry. M Perez M Watanabe MA Whitt JC de la Torre, J Virol 2001 75 15 7078 7085 10.1128/JVI.75.15.7078-7085.2001 11435588
16. Structure of the haemagglutinin membrane glycoprotein of influenza virus at 3 A resolution. IA Wilson JJ Skehel DC Wiley, Nature 1981 289 5796 366 373 10.1038/289366a0 7464906
17. A general model for the transmembrane proteins of HIV and other retroviruses. WR Gallaher JM Ball RF Garry MC Griffin RC Montelaro, AIDS Res Hum Retroviruses 1989 5 4 431 440 10.1089/aid.1989.5.431 2788443
18. Similar structural models of the transmembrane proteins of Ebola and avian sarcoma viruses. WR Gallaher, Cell 1996 85 4 477 478 10.1016/S0092- 8674(00)81248-9 8653783
19. Atomic structure of the ectodomain from HIV-1 gp41. W Weissenhorn A Dessen SC Harrison JJ Skehel DC Wiley, Nature 1997 387 6631 426 430 10.1038/387426a0 9163431
20. The viral transmembrane superfamily: possible divergence of Arenavirus and Filovirus glycoproteins from a common RNA virus ancestor. WR Gallaher C DiSimone MJ Buchmeier, BMC Microbiol 2001 1 1 10.1186/1471-2180-1-1 11208257
21. Model of the pre-insertion region of the spike (S2) fusion glycoprotein of the human SARS coronavirus: Implications for antiviral therapeutics. W Gallaher R Garry, 2003 http://www.virology.net/Articles/sars/s2model.html
22. Detection of a fusion peptide sequence in the transmembrane protein of human immunodeficiency virus. WR Gallaher, Cell 1987 50 3 327 328 10.1016/0092-8674(87)90485-5 3496970
23. Identification and characterization of the putative fusion peptide of the severe acute respiratory syndrome-associated coronavirus spike protein. B Sainz Jr JM Rausch WR Gallaher RF Garry WC Wimley, J Virol 2005 79 11 7195 7206 10.1128/JVI.79.11.7195-7206.2005 15890958
24. The envelope glycoprotein from tick-borne encephalitis virus at 2 A resolution. FA Rey FX Heinz C Mandl C Kunz SC Harrison, Nature 1995 375 6529 291 298 10.1038/375291a0 7753193
25. Structure of the dengue virus envelope protein after membrane fusion. Y Modis S Ogata D Clements SC Harrison, Nature 2004 427 6972 313 319 10.1038/nature02165 14737159
26. Conformational change and protein-protein interactions of the fusion protein of Semliki Forest virus. DL Gibbons MC Vaney A Roussel A Vigouroux B Reilly J Lepault M Kielian FA Rey, Nature 2004 427 6972 320 325 10.1038/nature02239 14737160 (Pubitemid 38133653)
27. Proteomics computational analyses suggest that hepatitis C virus E1 and pestivirus E2 envelope glycoproteins are truncated class II fusion proteins. RF Garry S Dash, Virology 2003 307 2 255 265 10.1016/S0042-6822(02)00065-X 12667795
28. Proteomics computational analyses suggest that the carboxyl terminal glycoproteins of Bunyaviruses are class II viral fusion proteins (beta-penetrenes). CE Garry RF Garry, Theor Biol Med Model 2004 1 1 10 10.1186/1742-4682-1-10 15544707
29. California serogroup Gc (G1) glycoprotein is the principal determinant of pH-dependent cell fusion and entry. ML Plassmeyer SS Soldan KM Stachelek J Martin-Garcia F Gonzalez-Scarano, Virology 2005 338 1 121 132 10.1016/j.virol.2005.04.026 15923017
30. Crystal structure of the low-pH form of the vesicular stomatitis virus glycoprotein G. S Roche S Bressanelli FA Rey Y Gaudin, Science 2006 313 5784 187 191 10.1126/science.1127683 16840692
31. Structure of the prefusion form of the vesicular stomatitis virus glycoprotein G. S Roche FA Rey Y Gaudin S Bressanelli, Science 2007 315 5813 843 848 10.1126/science.1135710 17289996
32. Crystal structure of glycoprotein B from herpes simplex virus 1. EE Heldwein H Lou FC Bender GH Cohen RJ Eisenberg SC Harrison, Science 2006 313 5784 217 220 10.1126/science.1126548 16840698
33. Proteomics computational analyses suggest that baculovirus GP64 superfamily proteins are class III penetrenes. CE Garry RF Garry, Virol J 2008 5 28 10.1186/1743-422X-5-28 18282283
34. The postfusion structure of baculovirus gp64 supports a unified view of viral fusion machines. J Kadlec S Loureiro NG Abrescia DI Stuart IM Jones, Nat Struct Mol Biol 2008 15 10 1024 1030 10.1038/nsmb.1484 18776902
35. A time-efficient, linear-space local similarity algorithm. X Huang W Miller, Adv Appl Math 1991 12 337 357 10.1016/0196-8858(91)90017-D
36. Prediction in 1D: secondary structure, membrane helices, and accessibility. B Rost, Methods Biochem Anal 2003 44 559 587 full-text 12647405
37. TMBASE - A database of membrane spanning protein segments. K Hofman W Stoffel, Bological Chemistry Hoppe-Seyler 1993 374 166
38. Membrane Protein Explorer version 3.0. S White C Snider M Myers S Jaysinghe J Kim, 2006 http://blanco.biomol.uci.edu/mpex/
39. Experimentally determined hydrophobicity scale for proteins at membrane interfaces. WC Wimley SH White, Nat Struct Biol 1996 3 10 842 848 10.1038/nsb1096-842 8836100
40. The coronavirus spike protein is a class I virus fusion protein: structural and functional characterization of the fusion core complex. BJ Bosch R van der Zee CA de Haan PJ Rottier, J Virol 2003 77 16 8801 8811 10.1128/JVI.77.16.8801-8811.2003 12885899
41. Mapping of functional elements in the stem-anchor region of tick-borne encephalitis virus envelope protein E. SL Allison K Stiasny K Stadler CW Mandl FX Heinz, J Virol 1999 73 7 5605 5612 10364309
42. Mutagenesis of a conserved fusion peptide-like motif and membrane-proximal heptad-repeat region of hepatitis C virus glycoprotein E1. HE Drummer I Boo P Poumbourios, J Gen Virol 2007 88 Pt 4 1144 1148 10.1099/vir.0.82567-0 17374757
43. Structure of a trimeric variant of the Epstein-Barr virus glycoprotein B. M Backovic R Longnecker TS Jardetzky, Proc Natl Acad Sci USA 2009 106 8 2880 2885 10.1073/pnas.0810530106 19196955
44. Cell entry of Borna Disease Virus follows a clathrin mediated endocytosis pathway that requires Rab5 and microtubules. R Clemente JC de la Torre, J Virol 2009
45. Identification of an N-Terminal Trimeric Coiled-Coil Core within Arenavirus Glycoprotein 2 Permits Assignment to Class I Viral Fusion Proteins. B Eschli K Quirin A Wepf J Weber R Zinkernagel H Hengartner, J Virol 2006 80 12 5897 5907 10.1128/JVI.00008-06 16731928
46. Characterization of a putative cellular receptor for HIV-1 transmembrane glycoprotein using synthetic peptides. NM Qureshi DH Coy RF Garry LA Henderson, Aids 1990 4 6 553 558 10.1097/00002030-199006000-00009 1974767
47. A synthetic peptide inhibitor of human immunodeficiency virus replication: correlation between solution structure and viral inhibition. C Wild T Oas C McDanal D Bolognesi T Matthews, Proc Natl Acad Sci USA 1992 89 21 10537 10541 10.1073/pnas.89.21.10537 1438243
48. Potent suppression of HIV-1 replication in humans by T-20, a peptide inhibitor of gp41-mediated virus entry. JM Kilby S Hopkins TM Venetta B DiMassimo GA Cloud JY Lee L Alldredge E Hunter D Lambert D Bolognesi, et al. Nat Med 1998 4 11 1302 1307 10.1038/3293 9809555
49. Peptide inhibitors of dengue virus and West Nile virus infectivity. YM Hrobowski RF Garry SF Michael, Virol J 2005 2 49 10.1186/1743-422X-2-49 15927084