A multivariate likelihood siras function for phasing and model refinement

Acta Crystallographica Section D: Biological Crystallography

Volumn 65, Issue 10, 2009, Pages 1051-1061

  Skubák, Pavol ^a   Murshudov, Garib ^b   Pannu, Navraj S ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

Direct incorporation of prior phase information; Experimental phasing; Multivariate normal probability distribution; Single isomorphous replacement with anomalous scattering

Indexed keywords

ADENOSINE TRIPHOSPHATASE; METHYLTRANSFERASE; PROTEIN;

ANIMAL; ARTICLE; BACTERIOPHAGE T4; CHEMICAL STRUCTURE; CHEMISTRY; ENZYMOLOGY; METHODOLOGY; PROTEIN DATABASE; STATISTICAL MODEL; STREPTOCOCCUS MUTANS; X RAY CRYSTALLOGRAPHY;

ADENOSINE TRIPHOSPHATASES; ANIMALS; BACTERIOPHAGE T4; CRYSTALLOGRAPHY, X-RAY; DATABASES, PROTEIN; LIKELIHOOD FUNCTIONS; METHYLTRANSFERASES; MODELS, MOLECULAR; PROTEINS; STREPTOCOCCUS MUTANS;

EID: 70349591838     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444909028078     Document Type: Article

References (32)

1. Abrahams, J. P. & Leslie, A. G. W. (1996). Acta Cryst. D52, 30-42.
2. Badger, J. (2003). Acta Cryst. D59, 823-827.
3. Beck, T., Krasauskas, A., Gruene, T. & Sheldrick, G. M. (2008). Acta Cryst. D64, 1179-1182.
4. Berman, H. M., Westbrook, J., Feng, Z., Gilliland, G., Bhat, T. N., Weissig, H., Shindyalov, I. N. & Bourne, P. E. (2000). Nucleic Acids Res. 28, 235-242.
5. Boggon, T. J. & Shapiro, L. (2000). Structure, 8, R143-R149.
6. Bricogne, G. & Irwin, J. (1996). Proceedings of the CCP4 Study Weekend. Macromolecular Refinement, edited by E. J. Dodson, M. Moore, A. Ralph & S. Bailey, pp. 85-92. Warrington: Daresbury Laboratory.
7. Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760-763.
8. Cowtan, K. (1999). Acta Cryst. D55, 1555-1567.
9. Dauter, Z., Dauter, M. & Rajashankar, K. R. (2000). Acta Cryst. D56, 232-237.
10. Dauter, Z., Li, M. & Wlodawer, A. (2001). Acta Cryst. D57, 239-249.
11. DeLaBarre, B. & Brunger, A. T. (2006). Acta Cryst. D62, 923-932.
12. Graaff, R. A. G. de, Hilge, M., van der Plas, J. L. & Abrahams, J. P. (2001). Acta Cryst. D57, 1857-1862.
13. La Fortelle, E. de & Bricogne, G. (1997). Methods Enzymol. 276, 472-494.
14. Long, F., Vagin, A. A., Young, P. & Murshudov, G. N. (2008). Acta Cryst. D64, 125-132.
15. Grosse-Kunstleve, R. W., Sauter, N. K., Moriarty, N. W. & Adams, P. D. (2002). J. Appl. Cryst. 35, 126-136.
16. Luzzati, V. (1952). Acta Cryst. 5, 802-810.
17. Matthews, B. W. (1966). Acta Cryst. 20, 82-86.
18. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
19. Ness, S. R., de Graaff, R. A. G., Abrahams, J. P. & Pannu, N. S. (2004). Structure, 12, 1753-1761.
20. North, A. C. T. (1965). Acta Cryst. 18, 212-216.
21. Pannu, N. S., McCoy, A. J. & Read, R. J. (2003). Acta Cryst. D59, 1801-1808.
22. Pannu, N. S., Murshudov, G. N., Dodson, E. J. & Read, R. J. (1998). Acta Cryst. D54, 1285-1294.
23. Pannu, N. S. & Read, R. J. (1996). Acta Cryst. A52, 659-668.
24. Pannu, N. S. & Read, R. J. (2004). Acta Cryst. D60, 22-27.
25. Perrakis, A., Morris, R. & Lamzin, V. S. (1999). Nature Struct. Biol. 6, 458-463.
26. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
27. Skubák, P., Murshudov, G. N. & Pannu, N. S. (2004). Acta Cryst. D60, 2196-2201.
28. Skubák, P., Ness, S. & Pannu, N. S. (2005). Acta Cryst. D61, 1626-1635.
29. Sun, S., Kondabagil, K., Gentz, P. M., Rossmann, M. G. & Rao, V. B. (2007). Mol. Cell, 25, 943-949.
30. Szczepanowski, R. H., Filipek, R. & Bochtler, M. (2005). J. Biol. Chem. 280, 22006-22011.
31. Taylor, G. (2003). Acta Cryst. D59, 1881-1890.
32. Wernimont, A. K., Huffman, D. L., Lamb, A. L., OHalloran, T. V. & Rosenzweig, A. C. (2000). Nature Struct. Biol. 7, 766-771.