메뉴 건너뛰기




Volumn 27, Issue 2, 2009, Pages 107-127

Rna oscillator: Limit cycle oscillations based on artificial biomolecular reactions

Author keywords

Autonomous Nanomechanical Devices; Bifurcation Analysis; Limit Cycle Oscillation; Molecular Reactions; Nonlinear Nonequilibrium Open System

Indexed keywords

AUTONOMOUS NANOMECHANICAL DEVICES; BIFURCATION ANALYSIS; LIMIT CYCLE OSCILLATION; MOLECULAR REACTIONS; NONLINEAR NONEQUILIBRIUM OPEN SYSTEM;

EID: 70349581952     PISSN: 02883635     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00354-008-0057-5     Document Type: Conference Paper
Times cited : (8)

References (28)
  • 2
    • 0038241770 scopus 로고    scopus 로고
    • Development of genetic circuitry exhibiting toggle switch or oscillatory behavior in Escherichia coli
    • DOI 10.1016/S0092-8674(03)00346-5
    • M. R. Atkinson M. A. Savageau J. T. Myers A. J. Ninfa 2003 Development of Genetic Circuitry Exhibiting Toggle Switch or Oscillatory Behavior in Escherichia coli, Cell 113 597 607 10.1016/S0092-8674(03)00346-5 (Pubitemid 36694185)
    • (2003) Cell , vol.113 , Issue.5 , pp. 597-607
    • Atkinson, M.R.1    Savageau, M.A.2    Myers, J.T.3    Ninfa, A.J.4
  • 3
    • 3242741738 scopus 로고    scopus 로고
    • Putting a brake on an autonomous DNA nanomotor
    • DOI 10.1021/ja047991r
    • Y. Chen C. Mao 2004 Putting a Brake on an Autonomous DNA Nanomotor, J. Am. Chem. Soc., 126 8626 8627 10.1021/ja047991r (Pubitemid 38955707)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.28 , pp. 8626-8627
    • Chen, Y.1    Mao, C.2
  • 4
    • 33645504528 scopus 로고    scopus 로고
    • Using gene regulation to program DNA-based molecular devices
    • DOI 10.1002/smll.200500074
    • W. U. Dittmer S. Kempter J. O. Radler F. C. Simme 2005 Using Gene Regulation to Program DNA-Based Molecular Devices,. Small 1 709 712 10.1002/smll.200500074 (Pubitemid 43951728)
    • (2005) Small , vol.1 , Issue.7 , pp. 709-712
    • Dittmer, W.U.1    Kempter, S.2    Radler, J.O.3    Simme, F.C.4
  • 5
    • 2342583547 scopus 로고    scopus 로고
    • Transcriptional control of DNA-based nanomachines
    • DOI 10.1021/nl049784v
    • W. U. Dittmer F. C. Simmel 2004 Transcriptional Control of DNA-Based Nanomachines, Nano Lett. 4 689 691 10.1021/nl049784v (Pubitemid 38586635)
    • (2004) Nano Letters , vol.4 , Issue.4 , pp. 689-691
    • Dittmer, W.U.1    Simme, F.C.2
  • 6
    • 0034688173 scopus 로고    scopus 로고
    • A synthetic oscillatory network of transcriptional regulators
    • DOI 10.1038/35002125
    • M. B. Elowitz S. Leibler 2000 A synthetic oscillatory network of transcriptional regulators, Nature 403 335 338 10.1038/35002125 (Pubitemid 30062393)
    • (2000) Nature , vol.403 , Issue.6767 , pp. 335-338
    • Elowitz, M.B.1    Leibier, S.2
  • 9
    • 18344381476 scopus 로고    scopus 로고
    • A synthetic gene-metabolic oscillator
    • DOI 10.1038/nature03508
    • E. Fung W. W. Wong J. K. Suen T. Bulter S.-g. Lee J. C. Liao 2005 A synthetic gene-metabolic oscillator, Nature 435 118 122 10.1038/nature03508 (Pubitemid 40655919)
    • (2005) Nature , vol.435 , Issue.7038 , pp. 118-122
    • Fung, E.1    Wong, W.W.2    Suen, J.K.3    Bulter, T.4    Lee, S.-G.5    Liao, J.C.6
  • 10
    • 0033787281 scopus 로고    scopus 로고
    • Enhancement of the enzymatic activity of ribonuclease HI from Thermus thermophilus HB8 with a suppressor mutation method
    • DOI 10.1021/bi0015008
    • N. Hirano M. Haruki M. Morikawa S. Kanaya 2000 Enhancement of the Enzymatic Activity of Ribonuclease HI from Thermus thermophilus HB8 with a Suppressor Mutation Method, Biochemistry 39 13285 13294 10.1021/bi0015008 (Pubitemid 30801010)
    • (2000) Biochemistry , vol.39 , Issue.43 , pp. 13285-13294
    • Hirano, N.1    Haruki, M.2    Morikawa, M.3    Kanaya, S.4
  • 11
    • 0033552937 scopus 로고    scopus 로고
    • A nanomechanical device based on the B-Z transition of DNA
    • DOI 10.1038/16437
    • C. Mao W. Sun Z. Shen N. C. Seeman 1999 A nanomechanical device based on the B-Z transition of DNA,. Nature 397 144 146 10.1038/16437 (Pubitemid 29050914)
    • (1999) Nature , vol.397 , Issue.6715 , pp. 144-146
    • Mao, C.1    Sun, W.2    Shen, Z.3    Seeman, N.C.4
  • 12
    • 0023198428 scopus 로고
    • Kinetic analysis of T7 RNA polymerase-promoter interactions with small synthetic promoters
    • DOI 10.1021/bi00384a006
    • C. T. Martint J. E. Coleman 1987 Kinetic Analysis of T7 RNA Polymerase-Promoter Interactions with Small Synthetic Promoters,. Biochemistry, 26 2690 2696 10.1021/bi00384a006 (Pubitemid 17084639)
    • (1987) Biochemistry , vol.26 , Issue.10 , pp. 2690-2696
    • Martin, C.T.1    Coleman, J.E.2
  • 13
    • 0042868726 scopus 로고    scopus 로고
    • Mathematical Biology
    • An Introduction, 3rd ed
    • Murray J. D. Mathematical Biology I: An Introduction, 3rd ed., Springer, 2002.
    • (2002) Springer
    • Murray, J.D.1
  • 15
    • 33748805785 scopus 로고    scopus 로고
    • Catalyzed relaxation of a metastable DNA fuel
    • DOI 10.1021/ja0635635
    • G. Seelig B. Yurke E. Winfree 2006 Catalyzed Relaxation of a Metastable DNA Fuel,. J. Am Chem. Soc. 128 12211 12220 10.1021/ja0635635 (Pubitemid 44413852)
    • (2006) Journal of the American Chemical Society , vol.128 , Issue.37 , pp. 12211-12220
    • Seelig, G.1    Yurke, B.2    Winfree, E.3
  • 16
    • 4143142965 scopus 로고    scopus 로고
    • A precisely controlled DNA biped walking device
    • DOI 10.1021/nl049527q
    • W. B. Sherman N. C. Seeman 2004 A Precisely Controlled DNA Biped Walking Device,. Nano Lett. 4 1203 1207 10.1021/nl049527q (Pubitemid 39092159)
    • (2004) Nano Letters , vol.4 , Issue.7 , pp. 1203-1207
    • Sherman, W.B.1    Seeman, N.C.2
  • 17
    • 4444298687 scopus 로고    scopus 로고
    • A synthetic DNA walker for molecular transport
    • DOI 10.1021/ja047543j
    • J. S. Shin N. A. Pierce 2004 A Synthetic DNA Walker for Molecular Transport,. J. Am. Chem. Soc. 126 10834 10835 10.1021/ja047543j (Pubitemid 39180556)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.35 , pp. 10834-10835
    • Shin, J.-S.1    Pierce, N.A.2
  • 18
    • 24644464003 scopus 로고    scopus 로고
    • DNA nanodevices
    • DOI 10.1002/smll.200400111
    • F. C. Simmel W. U. Dittmer 2005 DNA Nanodevices, Small 1 284 299 10.1002/smll.200400111 (Pubitemid 43951775)
    • (2005) Small , vol.1 , Issue.3 , pp. 284-299
    • Simmel, F.C.1    Dittmer, W.U.2
  • 21
    • 56149111222 scopus 로고    scopus 로고
    • Experiments and simulation models of a basic computation element of an autonomous molecular computing system
    • article no. 041921
    • Takinoue M., Kiga D., Shohda K.-i. and Suyama A.Experiments and simulation models of a basic computation element of an autonomous molecular computing system Phys. Rev. E., 78, article no. 041921, 2008.
    • (2008) Phys. Rev. E. , vol.78
    • Takinoue, M.1    Kiga, D.2    Suyama, A.3
  • 22
    • 22744435354 scopus 로고    scopus 로고
    • A DNAzyme That Walks Processively and Autonomously along a One-Dimensional Track
    • Y. Tian Y. He Y. Chen P. Yin C. Mao 2005 A DNAzyme That Walks Processively and Autonomously along a One-Dimensional Track, Angew. Chem. Int. Ed. 44 2 5
    • (2005) Angew. Chem. Int. Ed. , vol.44 , pp. 2-5
    • Tian, Y.1    He, Y.2    Chen, Y.3    Yin, P.4    Mao, C.5
  • 23
    • 4544294788 scopus 로고    scopus 로고
    • Molecular gears: A pair of DNA circles continuously rolls against each other
    • DOI 10.1021/ja046507h
    • Y. Tian C. Mao 2004 Molecular Gears: A Pair of DNA Circles Continuously Rolls against Each, J. Am. Chem. Soc. 126 11410 11411 10.1021/ja046507h (Pubitemid 39244936)
    • (2004) Journal of the American Chemical Society , vol.126 , Issue.37 , pp. 11410-11411
    • Tian, Y.1    Mao, C.2
  • 25
    • 0025732374 scopus 로고
    • Specificities and Kinetics of Uracil Excision from Uracil-Containing DNA Oligomers by Escherichia coli Uracil DNA Glycosylase
    • 10.1021/bi00230a033
    • U. Varshney J.H. v.d. Sande 1991 Specificities and Kinetics of Uracil Excision from Uracil-Containing DNA Oligomers by Escherichia coli Uracil DNA Glycosylase, Biochemistry 30 4055 4061 10.1021/bi00230a033
    • (1991) Biochemistry , vol.30 , pp. 4055-4061
    • Varshney, U.1    J. H, D.V.2
  • 26
    • 0037011984 scopus 로고    scopus 로고
    • A robust DNA mechanical device controlled by hybridization topology
    • DOI 10.1038/415062a
    • H. Yan X. Zhang Z. Shen N. C. Seitan 2002 A robust DNA mechanical device controlled by hybridization topology, Nature 415 62 65 10.1038/415062a (Pubitemid 34062447)
    • (2002) Nature , vol.415 , Issue.6867 , pp. 62-65
    • Yan, H.1    Zhang, X.2    Shen, Z.3    Seeman, N.C.4
  • 28
    • 0034632783 scopus 로고    scopus 로고
    • A DNA-fuelled molecular machine made of DNA
    • DOI 10.1038/35020524
    • B. Yurke A. J. Turberfield A. P. Mills. Jr. F. C. Simmel J. L. Neumann 2000 A DNA-fuelled molecular machine made of DNA, Nature 406 605 608 10.1038/35020524 (Pubitemid 30641042)
    • (2000) Nature , vol.406 , Issue.6796 , pp. 605-608
    • Yurke, B.1    Turberfield, A.J.2    Mills Jr., A.P.3    Simmel, F.C.4    Neumann, J.L.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.