A new approach for reversible RNA photocrosslinking reaction: Application to sequence-specific RNA selection

ChemBioChem

Volumn 10, Issue 9, 2009, Pages 1473-1476

  Yoshimura, Yoshinaga ^a   Ohtake, Tomoko ^a   Okada, Hajime ^a   Fujimoto, Kenzo ^a  

^a JAPAN ADVANCED INSTITUTE OF SCIENCE AND TECHNOLOGY   (Japan)

Author keywords

DNA; Gene technology; Nucleosides; Photochemical reaction; RNA

Indexed keywords

MICRORNA; OLIGODEOXYNUCLEOTIDE; PHOSPHORAMIDOUS ACID; RNA;

ARTICLE; CONTROLLED STUDY; CROSS LINKING; GEL ELECTROPHORESIS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MOLECULAR MODEL; MOLECULAR WEIGHT; PHOTOCHEMISTRY; PRIORITY JOURNAL; RNA SEQUENCE; THERMOSTABILITY;

BASE SEQUENCE; CROSS-LINKING REAGENTS; OLIGONUCLEOTIDES; PHOTOCHEMISTRY; RNA; TRANSITION TEMPERATURE;

EID: 70349558319     PISSN: 14394227     EISSN: 14397633     Source Type: Journal    
DOI: 10.1002/cbic.200900057     Document Type: Article

References (35)

1. G. J. Hannon, Nature 2002, 418, 244-251.
2. D. P. Bartel, Cell 2004, 116, 281-297.
3. a) G. Hutvágner, P. D. Zamore, Curr. Opin. Genet. Dev. 2002, 12, 225-232
4. b) J. Kurreck, Eur. J. Biochem. 2003, 270, 1628-1644.
5. a) X. Fengqin, H. Nielsen, W. Zhen, P. E. Nielsen, Photochem. Photobiol. 1993, 58, 238-245
6. b) C. Hélène, Curr. Opin. Biotechnol. 1993, 4, 29-36
7. c) R. A. Luce, P. B. Hopkins, Methods Enzymol. 2001, 340, 396-412.
8. a) D. Mundus, P. Wollenzien, Methods Enzymol. 2000, 318, 104-118
9. b) M. Escaffre, J.-C. Chottard, S. Bombard, Nucleic Acids Res. 2002, 30, 5222-5228
10. c) K. L. Buchmueller, B. T. Hill, M. S. Platz, K. M. Weeks, J. Am. Chem. Soc. 2003, 125, 10850-10861
11. d) T. Shapkina, S. Lappi, S. Franzen, P. Wollenzien, Nucleic Acids Res. 2004, 32, 1518-1526.
12. a) N. B. Leontis, A. Lescoute, E. Westhof, Curr. Opin. Struct. Biol. 2006, 16, 279-287
13. b) G. Mayer, D. Ackermann, N. Kuhn, M. Famulok, Angew. Chem. 2008, 120, 985-987
14. Mayer, D. Ackermann, N. Kuhn, M. Famulok Angew. Chem. Int. Ed. 2008, 47, 971-973.
15. a) R. Dalbiès, D. Payet, M. Leng, Proc. Natl. Acad. Sci. USA 1994, 91, 8147-8151
16. b) M. Boudvillain, M. Guérin, R. Dalbiès, T. Saison-Behmoaras, M. Leng, Biochemistry 1997, 36, 2925-2931.
17. a) Y. Yoshimura, Y. Ito, K. Fujimoto, Bioorg. Med. Chem. Lett. 2005, 15, 1299-1301
18. b) S. Ogasawara, Y. Yoshimura, M. Hayashi, I. Saito, K. Fujimoto, Bull. Chem. Soc. Jpn. 2007, 80, 2124-2130
19. c) T. Ami, K. Ito, Y. Yoshimura, K. Fujimoto, Org. Biomol. Chem. 2007, 5, 2583-2586.
20. Y. Yoshimura, K. Fujimoto, Org. Lett. 2008, 10, 3227-3230.
21. a) M. C. Golden, B. D. Collins, M. C. Willis, T. H. Koch, J. Biotechnol. 2000, 81, 167-178
22. b) M. Amarzguioui, H. Prydz, Biochem. Biophys. Res. Commun. 2004, 316, 1050-1058
23. c) Z. J. Lu, D. H. Mathews, Nucleic Acids Res. 2008, 36, 640-647.
24. +, found 5690.68
25. +, found 600.2019. The yield was calculated on the basis of RNA(GC).
26. a) E. A. Lesnik, S. M. Freier, Biochemistry 1995, 34, 10807-10815
27. b) S. Nakano, T. Kanzaki, N. Sugimoto, J. Am. Chem. Soc. 2004, 126, 1088-1095.
28. a) G. Godard, J.-C. Francois, I. Duroux, U. Asseline, M. Chassignol, N. Thuong, C. Hélène, T. Saison-Behmoaras, Nucleic Acids Res. 1994, 22, 4789-4795
29. b) J. M. Kean, P. S. Miller, Biochemistry 1994, 33, 9178-9186
30. c) A. Yamayoshi, R. Iwase, T. Yamaoka, A. Murakami, Chem. Commun. (Cambridge) 2003, 1370-1371.
31. a) C. Hélène, F. Brun, Photochem. Photobiol. 1970, 11, 77-84
32. b) C. K. Chang, J. Chem. Soc. Chem. Commun. 1977, 800-801
33. c) D. Mangion, M. Frizzle, D. R. Arnold, T. S. Cameron, Synthesis 2001, 8, 1215-1222.
34. a) J. Takamizawa, H. Konishi, K. Yanagisawa, S. Tomida, H. Osada, H. Endoh, T. Harano, Y. Yatabe, M. Nagino, Y. Nimura, T. Mitsudomi, T. Takahashi, Cancer Res. 2004, 64, 3753-3756
35. b) K. Inamura, Y. Togashi, K. Nomura, H. Ninomiya, M. Hiramatsu, Y. Satoh, S. Okumura, K. Nakagawa, Y. Ishikawa, Lung Cancer 2007, 58, 392-396.