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Volumn , Issue , 2006, Pages 221-248

Stochastic hybrid modeling of biochemical processes

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EID: 70349397825     PISSN: None     EISSN: None     Source Type: Book    
DOI: None     Document Type: Chapter
Times cited : (15)

References (37)
  • 1
    • 84944214361 scopus 로고    scopus 로고
    • Hybrid modeling and simulation of biological systems
    • M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, LNCS, Springer-Verlag, Berlin
    • R. Alur, C. Belta, F. Ivancic, V. Kumar, M. Mintz, G. Pappas, H. Rubin, J. Schug, and G.J. Pappas. Hybrid modeling and simulation of biological systems. In M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, Hybrid Systems: Computation and Control, number 2034 in LNCS, pages 19-32. Springer-Verlag, Berlin, 2001.
    • (2001) Hybrid Systems: Computation and Control , vol.2034 , pp. 19-32
    • Alur, R.1    Belta, C.2    Ivancic, F.3    Kumar, V.4    Mintz, M.5    Pappas, G.6    Rubin, H.7    Schug, J.8    Pappas, G.J.9
  • 2
    • 84944216817 scopus 로고    scopus 로고
    • Compositional refinement for hier-archical hybrid systems
    • M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, LNCS, Springer-Verlag, Berlin
    • R. Alur, R. Grosu, I. Lee, and O. Sokolsky. Compositional refinement for hier-archical hybrid systems. In M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, Hybrid Systems: Computation and Control, number 2034 in LNCS, pages 33-48. Springer-Verlag, Berlin, 2001.
    • (2001) Hybrid Systems: Computation and Control , vol.2034 , pp. 33-48
    • Alur, R.1    Grosu, R.2    Lee, I.3    Sokolsky, O.4
  • 3
    • 12344296412 scopus 로고    scopus 로고
    • Mathematical modeling of planar cell polarity to understand domineering nonautonomy
    • K. Amonlirdviman, N. A. Khare, D. R. P. Tree, W.-S. Chen, J. D. Axelrod, and C. J. Tomlin. Mathematical modeling of planar cell polarity to understand domineering nonautonomy. Science, 307(5708):423-426, Jan. 2005.
    • (2005) Science , vol.307 , Issue.5708 , pp. 423-426
    • Amonlirdviman, K.1    Khare, N.A.2    Tree, D.R.P.3    Chen, W.-S.4    Axelrod, J.D.5    Tomlin, C.J.6
  • 5
    • 24344435117 scopus 로고    scopus 로고
    • Qualitative analysis and verification of hybrid models of genetic regulatory networks: Nutritional stress response in Escherichia coli
    • L. Thiele and M. Morari, editors, LNCS, Springer-Verlag, Berlin
    • G. Batt, D. Ropers, H. de Jong, J. Geiselmann, M. Page, and D. Schneider. Qualitative analysis and verification of hybrid models of genetic regulatory networks: Nutritional stress response in Escherichia coli. In L. Thiele and M. Morari, editors, Hybrid Systems: Computation and Control, number 3414 in LNCS, pages 134-150. Springer-Verlag, Berlin, 2005.
    • (2005) Hybrid Systems: Computation and Control , vol.3414 , pp. 134-150
    • Batt, G.1    Ropers, D.2    De Jong, H.3    Geiselmann, J.4    Page, M.5    Schneider, D.6
  • 6
    • 35248884760 scopus 로고    scopus 로고
    • Reachability questions in piecewise determin-istic Markov processes
    • O. Maler and A. Pnueli, editors, LNCS, Springer-Verlag, Berlin
    • M.L. Bujorianu and J. Lygeros. Reachability questions in piecewise determin-istic Markov processes. In O. Maler and A. Pnueli, editors, Hybrid Systems: Computation and Control, number 2623 in LNCS, pages 126-140. Springer-Verlag, Berlin, 2003.
    • (2003) Hybrid Systems: Computation and Control , vol.2623 , pp. 126-140
    • Bujorianu, M.L.1    Lygeros, J.2
  • 8
    • 12244265093 scopus 로고    scopus 로고
    • DNA replication origins in the schizosac-charomycespombe genome
    • January
    • J. Dai, R.Y. Chuang, and T.J. Kelly. DNA replication origins in the schizosac-charomycespombe genome. PNAS, 102(102):337-342, January 2005.
    • (2005) PNAS , vol.102 , Issue.102 , pp. 337-342
    • Dai, J.1    Chuang, R.Y.2    Kelly, T.J.3
  • 9
    • 0000816682 scopus 로고
    • Piecewise-deterministic Markov processes: A general class ofnon-diffusion stochastic models
    • M.H.A. Davis. Piecewise-deterministic Markov processes: A general class of non-diffusion stochastic models. Journal ofthe Royal Statistical Society, B, 46(3):353-388,1984.
    • (1984) Journal Ofthe Royal Statistical Society, B , vol.46 , Issue.3 , pp. 353-388
    • Davis, M.H.A.1
  • 12
    • 39549089902 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A litera-ture review
    • H. de Jong. Modeling and simulation of genetic regulatory systems: A litera-ture review. Journal of Computational Biology, 79:726-739,2002.
    • (2002) Journal of Computational Biology , vol.79 , pp. 726-739
    • De Jong, H.1
  • 13
    • 35248865758 scopus 로고    scopus 로고
    • Hybrid modeling and simulation of genetic regulatory networks: A qualitative approach
    • O. Maler and A. Pnueli, editors, LNCS, Springer Verlag, Berlin
    • H. de Jong, J.-L. Gouze, C. Hernandez, M. Page, T. Sari, and J. Geiselmann. Hybrid modeling and simulation of genetic regulatory networks: A qualitative approach. In O. Maler and A. Pnueli, editors, Hybrid Systems: Computation and Control, number 2623 in LNCS, pages 267-282. Springer Verlag, Berlin, 2003.
    • (2003) Hybrid Systems: Computation and Control , vol.2623 , pp. 267-282
    • De Jong, H.1    Gouze, J.-L.2    Hernandez, C.3    Page, M.4    Sari, T.5    Geiselmann, J.6
  • 16
    • 4444384150 scopus 로고    scopus 로고
    • The replicon revisited: An old model learns new tricks in metazoan chromosomes
    • E. Fanning M.I. Aladjem. The replicon revisited: an old model learns new tricks in metazoan chromosomes. EMBO Rep., 5(7):686-691, July 2004.
    • (2004) EMBO Rep. , vol.5 , Issue.7 , pp. 686-691
    • Fanning, E.1    Aladjem, M.I.2
  • 17
    • 84944196766 scopus 로고    scopus 로고
    • Lateral inhibition through delta-notch signalling: A piecewise affine hybrid models
    • M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, LNCS, Springer-Verlag, Berlin
    • R. Ghosh and C. Tomlin. Lateral inhibition through delta-notch signalling: A piecewise affine hybrid models. In M. Di Benedetto and A. Sangiovanni-Vincentelli, editors, Hybrid Systems: Computation and Control, number 2034 in LNCS, pages 232-246. Springer-Verlag, Berlin, 2001.
    • (2001) Hybrid Systems: Computation and Control , vol.2034 , pp. 232-246
    • Ghosh, R.1    Tomlin, C.2
  • 18
    • 0035812742 scopus 로고    scopus 로고
    • Making sense of eukaryotic DNA replication origins
    • October
    • D.M. Gilbert. Making sense of eukaryotic DNA replication origins. Science, 294:96-100, October 2001.
    • (2001) Science , vol.294 , pp. 96-100
    • Gilbert, D.M.1
  • 19
    • 27644447823 scopus 로고    scopus 로고
    • Stochastic models for chemically reacting systems using polynomial stochastic hybrid systems
    • September
    • J. Hespanha and A. Singh. Stochastic models for chemically reacting systems using polynomial stochastic hybrid systems. International Journal on Robust Control, 15(15):669-689, September 2005.
    • (2005) International Journal on Robust Control , vol.15 , Issue.15 , pp. 669-689
    • Hespanha, J.1    Singh, A.2
  • 20
    • 35048839340 scopus 로고    scopus 로고
    • Modeling subtilin production in bacillus subtilis using stochastic hybrid systems
    • R. Alur and G.J. Pappas, editors, LNCS, Springer-Verlag, Berlin
    • J. Hu, W.C. Wu, and S.S. Sastry. Modeling subtilin production in bacillus subtilis using stochastic hybrid systems. In R. Alur and G.J. Pappas, editors, Hybrid Systems: Computation and Control, number 2993 in LNCS, pages 417-431. Springer-Verlag, Berlin, 2004.
    • (2004) Hybrid Systems: Computation and Control , vol.2993 , pp. 417-431
    • Hu, J.1    Wu, W.C.2    Sastry, S.S.3
  • 22
    • 19544379881 scopus 로고    scopus 로고
    • Stochasticity in gene expression: Fromtheories to phenotypes
    • M. Kaem, T.C. Elston, W.J. Blake, and J.J. Collins. Stochasticity in gene expression: Fromtheories to phenotypes. Nature Reviews Genetics, 6(6):451-464, 2005.
    • (2005) Nature Reviews Genetics , vol.6 , Issue.6 , pp. 451-464
    • Kaem, M.1    Elston, T.C.2    Blake, W.J.3    Collins, J.J.4
  • 23
    • 0036941857 scopus 로고    scopus 로고
    • Looking beyond the details: A rise in system-oriented approaches in genetics and molecular biology
    • H. Kitano. Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology. Curr. Genet., 41:1-10,2002.
    • (2002) Curr. Genet. , vol.41 , pp. 1-10
    • Kitano, H.1
  • 25
    • 84974698849 scopus 로고    scopus 로고
    • Decidability and complexity results for timed automata and semi-linear hybrid automata
    • Nancy Lynch and Bruce H. Krogh, editors, LNCS, Springer-Verlag, Berlin
    • J.S. Miller. Decidability and complexity results for timed automata and semi-linear hybrid automata. In Nancy Lynch and Bruce H. Krogh, editors, Hybrid Systems: Computation and Control, number 1790 in LNCS, pages 296-309. Springer-Verlag, Berlin, 2000.
    • (2000) Hybrid Systems: Computation and Control , vol.1790 , pp. 296-309
    • Miller, J.S.1
  • 27
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • C. V. Rao, D.M. Wolf, and A.P. Arkin. Control, exploitation and tolerance of intracellular noise. Nature, 420(6912):231-237,2002.
    • (2002) Nature , vol.420 , Issue.6912 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 30
    • 0030249292 scopus 로고    scopus 로고
    • A quantitative model for the cdc2 control of S phase and mitosis in fission yeast
    • September
    • B. Stem and P. Nurse. A quantitative model for the cdc2 control of S phase and mitosis in fission yeast. Trends in Genetics, 12(9), September 1996.
    • (1996) Trends in Genetics , vol.12 , Issue.9
    • Stem, B.1    Nurse, P.2
  • 31
    • 14544277626 scopus 로고    scopus 로고
    • Origin recognition and the chromosome cycle
    • February
    • B. Stillman. Origin recognition and the chromosome cycle. FEBS Lett., 579:877-884, February 2005.
    • (2005) FEBS Lett. , vol.579 , pp. 877-884
    • Stillman, B.1
  • 34
    • 0036905483 scopus 로고    scopus 로고
    • The dynamics of cell cycle regu-lation
    • J.J. Tyson, A. Csikasz-Nagy, and B. Novak. The dynamics of cell cycle regu-lation. BioEssays, 24:1095-1109,2002.
    • (2002) Bioessays , vol.24 , pp. 1095-1109
    • Tyson, J.J.1    Csikasz-Nagy, A.2    Novak, B.3
  • 35
    • 0037197850 scopus 로고    scopus 로고
    • Mechanisms of noise-resistance in genetic oscillators
    • JM. Vilar, HY. Kueh, N. Barkai, and S. Leibler. Mechanisms of noise-resistance in genetic oscillators. PNAS, 99:5988-5992,2002.
    • (2002) PNAS , vol.99 , pp. 5988-5992
    • Vilar, J.M.1    Kueh, H.Y.2    Barkai, N.3    Leibler, S.4
  • 36
    • 14744282987 scopus 로고    scopus 로고
    • Diversity in times of adversity: Proba-bilistic strategies in microbial survival games
    • D. Wolf, V.V. Vazirani, and A.P. Arkin. Diversity in times of adversity: proba-bilistic strategies in microbial survival games. Journal ofTheoretcial Biology, 234(2):227-253,2005.
    • (2005) Journal Oftheoretcial Biology , vol.234 , Issue.2 , pp. 227-253
    • Wolf, D.1    Vazirani, V.V.2    Arkin, A.P.3
  • 37
    • 22744441386 scopus 로고    scopus 로고
    • Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 tat fluctuations drive phenotypic diversity
    • L. Wu, J.C. Bumett, J.E. Toettcher, A.P. Arkin, and D.V. Schaffer. Stochastic gene expression in a lentiviral positive-feedback loop: HIV-1 tat fluctuations drive phenotypic diversity. Cell, 122(2):169-182,2005.
    • (2005) Cell , vol.122 , Issue.2 , pp. 169-182
    • Wu, L.1    Bumett, J.C.2    Toettcher, J.E.3    Arkin, A.P.4    Schaffer, D.V.5


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