Binary trait mapping in experimental crosses with selective genotyping

Genetics

Volumn 182, Issue 3, 2009, Pages 863-874

  Manichaikul, Ani ^a   Broman, Karl W ^b  

^a UNIVERSITY OF VIRGINIA   (United States)

^b UNIVERSITY OF WISCONSIN SCHOOL OF MEDICINE AND PUBLIC HEALTH   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; GENE LOCATION; GENE MAPPING; GENE NUMBER; GENETIC SCREENING; GENETIC TRAIT; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; MOUSE; NONHUMAN; PHENOTYPE; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS; ALGORITHM; ANIMAL; BIOLOGICAL MODEL; CHROMOSOME MAP; CROSS BREEDING; FEMALE; GENETIC LINKAGE; GENETICS; GENOME; MALE; METHODOLOGY; STATISTICAL MODEL;

ALGORITHMS; ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; FEMALE; GENOME; GENOTYPE; LIKELIHOOD FUNCTIONS; LOD SCORE; MALE; MODELS, GENETIC; PHENOTYPE;

EID: 70349306972     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.098913     Document Type: Article

References (23)

1. BOYARTCHUK, V. L., K. W. BROMAN, R. E. MOSHER, S. E. D'ORAZIO, M. N. STARNBACH et al., 2001 Multigenic control of Listeria monocytogenes susceptibility in mice. Nat. Genet. 27: 259-260.
2. BROMAN, K. W., 2003 Mapping quantitative trait loci in the case of a spike in the phenotype distribution. Genetics 163: 1169-1175. (Pubitemid 36417956)
3. BROMAN, K. W., H. WU, S. SEN and G. A. CHURCHILL, 2003 R/qtl: QTL mapping in experimental crosses. Bioinformatics 19: 889-890.
4. CHEN, Z., and J. LIU, 2009 Mixture generalized linear models for multiple interval mapping of quantitative trait loci in experimental crosses. Biometrics (in press).
5. CHURCHILL, G. A., and R. W. DOERGE, 1994 Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971. (Pubitemid 24337818)
6. COFFMAN, C. J., R. W. DOERGE, K. L. SIMONSEN, K. M. NICHOLS, C. K. DUARTE et al., 2005 Model selection in binary trait locus mapping. Genetics 170: 1281-1297. (Pubitemid 41105482)
7. DEMPSTER, A., N. LAIRD and D. RUBIN, 1977 Maximum likelihood from incomplete data via the EM algorithm (with discussion). J. R. Stat. Soc. Ser. B 39: 1-38.
8. DENG, W., H. CHEN and Z. LI, 2006 A logistic regression mixture model for interval mapping of genetic trait loci affecting binary phenotypes. Genetics 172: 1349-1358.
9. FARIS, J. D., B. LADDOMADA and B. S. GILL, 1998 Molecular mapping of segregation distortion loci in Aegilops tauschii. Genetics 149: 319-327.
10. HAUSER, E. R., and M. BOEHNKE, 1998 Genetic linkage analysis of complex genetic traits by using affected sibling pairs. Biometrics 54: 1238-1246. (Pubitemid 29018613)
11. HENSHALL, J. M., and M. E. GODDARD, 1999 Multiple-trait mapping of quantitative trait loci after selective genotyping using logistic regression. Genetics 151: 885-894.
12. HOLMANS, P., 1993 Asymptotic properties of affected-sib-pair linkage analysis. Am. J. Hum. Genet. 52: 362-374.
13. HUANG, H., C. D. EVERSLEY, D. W. THREADGILL and F. ZOU, 2007 Bayesian multiple quantitative trait loci mapping for complex traits using markers of the entire genome. Genetics 176: 2529-2540. (Pubitemid 47360680)
14. LAMBRIDES, C. J., I. D. GODWIN, R. J. LAWN and B. C. IMRIE, 2004 Segregation distortion for seed testa color in Mungbean (Vigna radiata L. Wilcek). J. Hered. 95: 532-535.
15. LANDER, E. S., and D. BOTSTEIN, 1989 Mapping Mendelian factors underlying quantitative traits using RFLP linkage maps. Genetics 121: 185-199.
16. LANDER, E. S., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. J. DALY et al., 1987 MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
17. MACCLUER, J., J. VANDEBURG, B.READ and O. RYDER, 1986 Pedigree analysis by computer simulation. Zoo Biol. 5: 149-160.
18. MCINTYRE, L. M., C. J. COFFMAN and R. W. DOERGE, 2001 Detection and localization of a single binary trait locus in experimental populations. Genet. Res. 78: 79-92.
19. MORAN, J. L., A. D. BOLTON, P. V. TRAN, A. BROWN, N. D. DWYER et al., 2006 Utilization of a whole genome SNP panel for efficient genetic mapping in the mouse. Genome Res. 16: 436-440.
20. NELDER, J., and R. MEAD, 1965 A simplex method for function minimization. Comput. J. 7: 308-313.
21. RISCH, N., 1990 Linkage strategies for genetically complex traits. II. The power of affected relative pairs. Am. J. Hum. Genet. 46: 229-241.
22. XU, S., and W. R. ATCHLEY, 1996 Mapping quantitative trait loci for complex binary diseases using line crosses. Genetics 143: 1417-1424.
23. YI, N., and S. XU, 2000 Bayesian mapping of quantitative trait loci for complex binary traits. Genetics 155: 1391-1403. (Pubitemid 30463446)