Genotypic diversity of escherichia coli in a dairy farm

Foodborne Pathogens and Disease

Volumn 6, Issue 7, 2009, Pages 837-847

  Son, Insook ^a   Van Kessel, Jo Ann S ^a   Karns, Jeffrey S ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

VIRULENCE FACTOR;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM DETECTION; BACTERIUM ISOLATE; CONTROLLED STUDY; DAIRY CATTLE; DAIRYING; ENTEROHEMORRHAGIC ESCHERICHIA COLI; ENTEROPATHOGENIC ESCHERICHIA COLI; ESCHERICHIA COLI O157; FECES MICROFLORA; GENOTYPE; MANURE; MICROBIAL DIVERSITY; MILK; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL;

ANIMALS; CATTLE; CATTLE DISEASES; CLUSTER ANALYSIS; DAIRYING; ESCHERICHIA COLI; ESCHERICHIA COLI INFECTIONS; FECES; FEMALE; FOOD CONTAMINATION; GENETIC VARIATION; MILK; PENNSYLVANIA; PHYLOGENY; RECTUM; RESTRICTION MAPPING; SOFTWARE; VIRULENCE FACTORS; WATER MICROBIOLOGY; WATER POLLUTION;

BOS; ESCHERICHIA COLI;

EID: 70349210426     PISSN: 15353141     EISSN: None     Source Type: Journal    
DOI: 10.1089/fpd.2008.0201     Document Type: Article

References (31)

1. Arthur TM, Bosilevac JM, Nou X, Shackelford SD, Wheeler TL, and Koohmaraie M. Comparison of the molecular genotypes of Escherichia coli O157:H7 from the hides of beef cattle in different regions of North America. J Food Prot 2007;70:1622-1626.
2. Avery SM, Liebana E, Hutchison ML, and Buncic S. Pulsed field gel electrophoresis of related Escherichia coli O157 isolates associated with beef cattle and comparison with unrelated isolates from animals, meats and humans. Int J Food Microbiol 2004;92:161-169.
3. Clermont OS, Bonacorsi S, and Bingen E. Rapid and simple determination of the Escherichia coli phylogenetic group. Appl Environ Microbiol 2000;66:4555-4558.
4. Duriez P, Clermont O, Bonacorsi S, Bingen E, Chaventre A, Elion J, Picard B, and Denamur E. Commensal Escherichia coli isolates are phylogenetically distributed among geographically distinct human populations. Microbiology 2001;147: 1671-1676. (Pubitemid 32544832)
5. EPA Office of Science and Technology. Improved Enumeration Methods for the Recreational Water Quality Indicators: Enterococci and Escherichia coli. EPA=821=R-97=004, Washington, DC, 2000.
6. Available at: www.epa.gov/nerlcwww/RecManv.pdf. Escobar-Paramo P, Clermont O, Blanc-Potard AB, Bui H, Le BC, and Denamur E. A specific genetic background is required for acquisition and expression of virulence factors in Escherichia coli. Mol Biol Evol 2004;21:1085-1094.
7. Faith NG, Shere JA, Brosch R, Arnold KW, Ansay SE, Lee MS, Luchansky JB, and Kaspar CW. Prevalence and clonal nature of Escherichia coli O157:H7 on dairy farms in Wisconsin. Appl Environ Microbiol 1996;62:1519-1525.
8. Girardeau JP, Dalmasso A, Bertin Y, Ducrot C, Bord S, Livrelli V, Vernozy-Rozand C, and Martin C. Association of virulence genotype with phylogenetic background in comparison to different seropathotypes of shiga toxin-producing Escherichia coli isolates. J Clin Microbiol 2005;43:6098-6107.
9. Hancock DD, Besser TE, and Rice DH. Ecology of Escherichia coli O157:H7 in cattle and impact of management practices. In: Escherichia coli O157:H7 and Other Shiga Toxin-Producing E. coli Strains. Kaper JB and O'Brien AD (eds.). Washington, DC: ASM Press, 1998, pp. 85-91.
10. Herzer PJ, Inouye S, Inouye M, and Whittam TS. Phylogenetic distribution of branched RNA-linked multicopy single-stranded DNA among natural isolates of Escherichia coli. J Bacteriol 1990;172:6175-6181.
11. Higgins J, Hohn C, Hornor S, Frana M, Denver M, and Joerger R. Genotyping of Escherichia coli from environmental and animal samples. J Microbiol Methods 2007;70:227-235.
12. Houser BA, Donaldson SC, Padte R, Sawant AA, DebRoy C, and Jayarao BM. Assessment of phenotypic and genotypic diversity of Escherichia coli shed by healthy lactating dairy cattle. Foodborne Pathog Dis 2008;5:41-51.
13. Hunter PR and Gaston MA. Numerical index of the discriminatory ability of typing systems: An application of Simpson's index of diversity. J Clin Microbiol 1988;26:2465-2466.
14. Jarvis GN, Kizoulis MG, Diez-Gonzalez F, and Russell JB. The genetic diversity of predominant Escherichia coli strains isolated from cattle fed various amounts of hay and grain. FEMS Microbiol Ecol 2000;32:225-233.
15. Karns JS, Van Kessel JS, McClusky BJ, and Perdue ML. Incidence of Escherichia coli O157:H7 and E. coli virulence factors in US bulk tank milk as determined by polymerase chain reaction. J Dairy Sci 2007;90:3212-3219.
16. Lahti E, Ruoho O, Rantala L, Hannonen ML, and Honkanen-Buzalski T. Longitudinal study of Escherichia coli O157 in a cattle finishing unit. Appl Environ Microbiol 2003;69:554-561.
17. Leung KT, Mackereth R, Tien YC, and Topp E. A comparison of AFLP and ERIC-PCR analysis for discriminating Escherichia coli from cattle, pig and human sources. FEMS Microbiol Ecol 2004;47:111-119.
18. Lukinmaa S, Nakari UM, Eklund M, and Siitonen A. Application of molecular genetic methods in diagnostics and epidemiology of food-borne bacterial pathogens. APMIS 2004;112: 908-929.
19. McDaniels AE, Rice EW, Reyes AL, Johnson CH, Haugland RA, and Stelma GN Jr. Confirmational identification of Escherichia coli, a comparison of genotypic and phenotypic assays for glutamate decarboxylase and beta-D-glucuronidase. Appl Environ Microbiol 1996;62:3350-3354.
20. Ochman H and Selander RK. Standard reference strains of Escherichia coli from natural populations. J Bacteriol 1984;157: 690-693.
21. Ribot EM, Fair MA, Gautom R, Cameron DN, Hunter SB, Swaminathan B, and Barrett TJ. Standardization of pulsed-field gel electrophoresis protocols for the subtyping of Escherichia coli O157:H7, Salmonella, and Shigella for PulseNet. Foodborne Pathog Dis 2006;3:59-67.
22. Schleif RF and Wensink PC. Practical Methods in Molecular Biology. New York: Springer-Verlag, 1981.
23. Shere JA, Bartlett KJ, and Kaspar CW. Longitudinal study of Escherichia coli O157:H7 dissemination on four dairy farms in Wisconsin. Appl Environ Microbiol 1998;64:1390-1399.
24. Thorpe CM, Ritchie JM, and Acheson DWK. Eterohemorrhagic and other shiga toxin-producing Escherichia coli. In: Escherichia coli Virulence Mechanisms of a Versatile Pathogen. Donnenberg MS (ed.). New York: Academic Press, 2002, pp. 119-154.
25. Van Kessel JS, Karns JS, Wolfgang DR, Hovingh E, and Schukken YH. Longitudinal study of a clonal, subclinical outbreak of Salmonella enterica subsp. enterica serovar Cerro in a U.S. dairy herd. Foodborne Pathog Dis 2007;4:449-461.
26. Van Kessel JS, Karns JS, Wolfgang DR, Hovingh E, Jayarao BM, Van Tassell CP, and Schukken YH. Environmental sampling to predict fecal prevalence of Salmonella in an intensively monitored dairy herd. J Food Prot 2008;71:1967-1973.
27. Welinder-Olsson C, Badenfors M, Cheasty T, Kjellin E, and Kaijser B. Genetic profiling of enterohemorrhagic Escherichia coli strains in relation to clonality and clinical signs of infection. J Clin Microbiol 2002;40:959-964.
28. Wells JG, Shipman LD, Greene KD, Sowers EG, Green JH, Cameron DN, Downes FP, Martin ML, Griffin PM, and Ostroff SM. Isolation of Escherichia coli serotype O157:H7 and other Shiga-like-toxin-producing E. coli from dairy cattle. J Clin Microbiol 1991;29:985-989.
29. Whipp SC, Rasmussen MA, and Cray WC Jr. Animals as a source of Escherichia coli pathogenic for human beings. J Am Vet Med Assoc 1994;204:1168-1175.
30. Wilkerson VA, Mertens DR, and Casper DP. Prediction of excretion of manure and nitrogen by Holstein dairy cattle. J Dairy Sci 1997;80:3193-3204.
31. Zadoks RN and Schukken YH. Use of molecular epidemiology in veterinary practice. Vet Clin. N Am Food Anim Pract 2006; 22:229-261.