Genetic improvement of fish: Achievements and challenges for tomorrow;Amélioration génétique des poissons: Quelles réalisations et quels défis pour demain?

Cahiers Agricultures

Volumn 18, Issue 2, 2009, Pages 262-269

  Vandeputte, Marc ^a,b   Baroiller, Jean François ^c   Haffray, Pierrick ^d   Quillet, Edwige ^a  

^a CEMAGREF   (France)

^b IFREMER   (France)

^c CIRAD   (France)

^d Sysaaf Section aquacole Campus de Beaulieu ^*  (France)

Author keywords

Animal productions; Fishing and aquaculture; Genetic improvement; Scientific and agricultural research

Indexed keywords

ANIMALIA;

EID: 70349181011     PISSN: 11667699     EISSN: 17775949     Source Type: Journal    
DOI: 10.1684/agr.2009.0291     Document Type: Article

References (78)

1. Baroiller JF, Chourrout D, Fostier A, Jalabert B. Temperature and sex chromosomes govern sex-ratios of the mouthbrooding Cichlid fish Oreochromis niloticus. J Exp Zool 1995; 273: 216-23.
2. Baroiller JF, D'Cotta H. Environment and sex determination in farmed fish. Comp Biochem Physiol Part C Toxicol Pharmacol 2001; 130: 399-409.
3. Benfey TJ. The physiology and behavior of triploid fishes. Res Fish Sci 1999; 7: 39-67.
4. Bentsen et al, 1998 Bentsen HB, Eknath AE, Palada-de-Vera MS, et al. Genetic improvement of farmed tilapias: growth performance in a complete diallel cross experiment with eight strains of Oreochromis niloticus. Aquaculture 1998; 160: 145-73.
5. Bentsen HB, Thodesen J. Genetic interactions between farmed and wild fish, with examples from the atlantic salmon case in Norway. In: Gjedrem T, ed. Selection and breeding programs in aquaculture. Dordrecht (Pays-Bas): Springer, 2008.
6. Bolivar RB, Newkirk GF. Response to within family selection for body weight in Nile tilapia (Oreochromis niloticus) using a single-trait animal model. Aquaculture 2002; 204: 371-81.
7. Breton B, Quillet E, Jalabert B. Contrôle de la reproduction et du sexe chez les poissons d'élevage. Inra Prod Anim 1996 (hors série): 17-26.
8. Chatain B, Chavanne H. La génétique du bar (Dicentrarchus labrax L.). Cah Agric 2009; 18: 249-55. Doi: 10.1684/agr.2009.0296
9. Chevassus B. Hybridization in salmonids: results and perspectives. Aquaculture 1979; 17: 113-28.
10. Chevassus B, Quillet E, Krieg F, et al. Enhanced individual selection for selecting fast growing fish: the 'PROSPER' method, with application on brown trout (Salmo trutta fario). Genet Sel Evol 2004; 36: 643-61.
11. Chourrout D, Guyomard R, Houdebine LM. High efficiency gene transfer in rainbow trout (Salmo gairdnerii Rich.) by microinjection into egg cytoplasm. Aquaculture 1986; 51: 143-50.
12. Cnaani A, Lee BY, Zilberman N, et al. Genetics of sex determination in tilapiine species. Sex Dev 2008; 2: 43-54.
13. Cossins AR, Crawford DL. Fish as models for environmental genomics. Nat Rev Genet 2005; 6: 324-33.
14. Crollius HR, Weissenbach J. Fish genomics and biology. Genome Res 2005; 15: 1675-82.
15. Devlin RH, Biagi CA, Yesaki TY, Smailus DE, Byatt JC. Growth of domesticated transgenic fish. Nature 2001; 409: 781-2.
16. Devlin RH, Yesaki TY, Biagi C, Donaldson EM. Extraordinary salmon growth. Nature 1994; 371: 209-10.
17. Drouin de Bouville R. Une réussite carpicole: le croisement Beauvoir n° 1. B Fr Piscic 1930; 20: 169-76.
18. Duarte CM, Marba N, Holmer M. Rapid domestication of marine species. Science 2007; 316: 382-3.
19. Dupont-Nivet M, Vandeputte M, Vergnet A, et al. Heritabilities and GxE interactions for growth in the European sea bass (Dicentrarchus labrax L.) using a marker-based pedigree. Aquaculture 2008: 81-7.
20. Embody GC, Hayford CO. The advantage of rearing brook trout fingerlings from selected breeders. Trans Am Fish Soc 1925; 55: 135-48.
21. Felip A, Zanuy S, Carrillo M, Piferrer F. Induction of triploidy and gynogenesis in teleost fish with emphasis on marine species. Genetica 2001; 111: 175-95.
22. Fontaine et al., 2009 Fontaine P, Legendre M, Vandeputte M, Fostier A. Domestication de nouvelles espèces et développement durable de la pisciculture. Cah Agric 2009; 18: 119-24. Doi: 10.1684/agr.2009.0293
23. Francis F. Fish culture: a practical guide to the modern system of breeding and rearing fish. London: Routledge, Warne, and Routledge, 1863.
24. Gjedrem T, Thodesen J. Selection. In: Gjedrem T, ed. Selection and breeding programs in aquaculture. Dordrecht (Pays-Bas): Springer, 2005.
25. Gjerde B, Gjedrem T. Estimates of phenotypic and genetic parameters for carcass traits in atlantic salmon and rainbow trout. Aquaculture 1984; 36: 97-110.
26. Grima L, Quillet E, Boujard T, Chatain B, Mambrini M. Genetic variability in residual feed intake in rainbow trout clones and testing of indirect selection criteria. Genet Sel Evol 2008; 40: 607-24.
27. Gross MR. One species with two biologies: atlantic salmon (Salmo salar) in the wild and in aquaculture. Can J Fish Aquat Sci 1998; 55 (Suppl. 1): 131-44.
28. Gunnes K, Gjedrem T. Selection experiments with salmon. IV. Growth of atlantic salmon during two years in the sea. Aquaculture 1978; 15: 19-33.
29. Haffray P, Pincent C, Rault P, Coudurier B. Domestication et amélioration génétique des cheptels piscicoles français dans le cadre du SYSAAF. Inra Prod Anim 2004; 17: 243-52.
30. Havenstein GB, Ferket PR, Qureshi MA. Growth, livability, and feed conversion of 1957 versus 2001 broilers when fed representative 1957 and 2001 broiler diets. Poult Sci 2003; 82: 1500-8.
31. Henryon M, Jokumsen A, Berg P, et al. Genetic variation for growth rate, feed conversion efficiency, and disease resistance exists within a farmed population of rainbow trout. Aquaculture 2002; 209: 59-76.
32. Herbinger CM. DNA fingerprint based analysis of paternal and maternal effects on offspring growth and survival in communally reared rainbow trout. Aquaculture 1995; 137: 245-56.
33. Hulata G. Genetic manipulations in aquaculture: a review of stock improvement by classical and modern methodologies. Genetica 2001; 111: 155-73.
34. Hulata G. A review of genetic improvement of the common carp (Cyprinus carpio L.) and other cyprinids by crossbreeding, hybridization and selection. Aquaculture 1995; 129: 143-55.
35. Jackson TR, Ferguson MM, Danzmann RG, et al. Identification of two QTL influencing upper temperature tolerance in three rainbow trout (Oncorhynchus mykiss) half-sib families. Heredity 1998; 80: 143-51.
36. Kause et al, 2007 Kause A, Paananen T, Ritola O, Koskinen H. Direct and indirect selection of visceral lipid weight, fillet weight, and fillet percentage in a rainbow trout breeding program. J Anim Sci 2007; 85: 3218-27.
37. Kause A, Tobin D, Dobly A, et al. Recording strategies and selection potential of feed intake measured using the X-ray method in rainbow trout. Genet Sel Evol 2006; 38: 389-409.
38. Kause A, Tobin D, Houlihan DF, et al. Feed efficiency of rainbow trout can be improved through selection: different genetic potential on alternative diets. J Anim Sci 2006; 84: 807-17.
39. Kause A, Ritola O, Paananen T, Mantysaari E, Eskelinen U. Coupling body weight and its composition: a quantitative genetic analysis in rainbow trout. Aquaculture 2002; 211: 65-79.
40. Kocour M, Mauger S, Rodina M, Gela D, Linhart O, Vandeputte M. Heritability estimates for processing and quality traits in common carp (Cyprinus carpio L.) using a molecular pedigree. Aquaculture 2007; 270: 43-50.
41. Kolditz CL, Paboeuf G, Borthaire M, et al. Changes induced by dietary energy intake and divergent selection for muscle fat content in rainbow trout (Oncorhynchus mykiss), assessed by transcriptome and proteome analysis of the liver. BMC GENOMICS 2008; 9: 506.
42. Komen J, de Boer P, Richter CJJ. Male sex reversal in gynogenetic XX females of common carp (Cyprinus carpio L.) by a recessive mutation in a sex-determining gene. J Hered 1992; 83: 431-4.
43. Komen J, Thorgaard GH. Androgenetic and gynogenetic clones of fish: a review. Aquaculture 2007; 269: 150-73.
44. Le Roy P, Elsen JM. Principe de l'utilisation des marqueurs génétiques pour la détection de gènes influençant les caractères quantitatifs. Inra Prod Anim 2000 (hors série): 211-5.
45. Lee BY, Kocher TD. Comparative genomics and positional cloning. In: Liu ZJ, ed. Aquaculture genome technologies. Oxford: Blackwell Publishing, 2007.
46. Liu ZJ. Fish genomics and analytical genetic technologies, with examples of their potential applications in management of fish genetic resources. In: Bartley DM, Harvey BJ, Pullin RS, eds. FAO Fisheries Proceedings. Volume 5. Rome: FAO, 2007.
47. Mambrini M, Medale F, Sanchez MP, et al. Selection for growth in brown trout increases feed intake capacity without affecting maintenance and growth requirements. J Anim Sci 2004; 82: 2865-75.
48. McGinnity et al, 2003 McGinnity P, Prodhöl P, Ferguson A, et al. Fitness reduction and potential extinction of wild populations of atlantic salmon, Salmo salar, as a result of interactions with escaped farm salmon. Proc R Soc Lond B Biol Sci 2003; 270: 2443-50.
49. Muir WM, Howard RD. Possible ecological risks of transgenic organism release when transgenes affect mating success: sexual selection and the Trojan gene hypothesis. Proc Natl Acad Sci USA 1999; 96: 13853-6.
50. Nam Y, Noh J, Cho Y, et al. Dramatically accelerated growth and extraordinary gigantism of transgenic mud loach Misgurnus mizolepis. Transgenic Res 2001; 10: 353-62.
51. Naylor RL, Goldburg RJ, Primavera JH, et al. Effect of aquaculture on world fish supplies. Nature 2000; 405: 1017-24.
52. Norris AT, Cunningham EP. Estimates of phenotypic and genetic parameters for flesh color traits in farmed atlantic salmon based on multiple trait animal model. Livest Prod Sci 2004; 89: 209-22.
53. Olesen I, Gjedrem T, Bentsen HB, Gjerde B, Rye M. Breeding programs for sustainable aquaculture. J Appl Aquacult 2003; 13: 179-204.
54. Palti Y, Silverstein JT, Wieman H, Phillips JG, Barrows FT, Parsons JE. Evaluation of family growth response to fishmeal and gluten-based diets in rainbow trout (Oncorhynchus mykiss). Aquaculture 2006; 255: 548-56.
55. Peatman E, Liu ZJ. Microarray fundamentals: basic principles ands application in aquaculture. In: Liu ZJ, ed. Aquaculture genome technologies. Oxford: Blackwell Publishing, 2007.
56. Pierce LR, Palti Y, Silverstein JT, Barrows FT, Hallerman EM, Parsons JE. Family growth response to fishmeal and plant-based diets shows genotype x diet interaction in rainbow trout (Oncorhynchus mykiss). Aquaculture 2008; 278: 37-42.
57. Punnett RC. Merism and sex in 'Spinax niger'. Biometrika 1904; 3: 313-62.
58. Quillet E, Aubard G, Quéau I. Mutation in a sex-determining gene in rainbow trout: detection and genetic analysis. J Hered 2002; 93: 91-9.
59. Quillet E, Boudry P, Lapègue S. Variabilité génétique de la réponse aux organismes pathogènes: un outil pour améliorer la santé des mollusques et des poissons d'élevage. Inra Prod Anim 2007; 20: 239-52.
60. Quillet et al, 2005 Quillet E, Le Guillou S, Aubin J, Fauconneau B. Two-way selection for muscle lipid content in pan-size rainbow trout (Oncorhynchus mykiss). Aquaculture 2005; 245: 49-61.
61. Quinn et al, 2008 Quinn N, Levenkova N, Chow W, et al. Assessing the feasibility of GS FLX Pyrosequencing for sequencing the atlantic salmon genome. BMC Genomics 2008; 9: 404.
62. Rise ML, von Schalburg KR, Cooper GA, Koop BF. Salmonid DNA microarrays and other tools for functional genomics research. In: Liu ZJ, ed. Aquaculture genome technologies. Oxford: Blackwell Publishing, 2007.
63. Saillant E, Fostier A, Haffray P, Menu B, Thimonier J, Chatain B. Temperature effects and genotype-temperature interactions on sex determination in the European sea bass (Dicentrarchus labrax L.). J Exp Zool 2002; 292: 494-505.
64. Schaeffer J, Ryan A. Developmental plasticity in the thermal tolerance of zebrafish Danio rerio. J Fish Biol 2006; 69: 722-34.
65. Schmidt J. Racial studies in fishes. III. Diallel crossings with trout (Salmo trutta L.). J Genet 1919; 9: 61-7.
66. Sellner EM, Kim JW, McClure MC, Taylor KH, Schnabel RD, Taylor JF. Applications of genomic information in livestock. J Anim Sci 2007; 85: 3148-58.
67. Streelman JT, Kocher TD. Microsatellite variation associated with prolactin expression and growth of salt-challenged tilapia. Physiol Genomics 2002; 9: 1-4.
68. Sundström et al, 2004 Sundström LF, Lohmus M, Johnsson JI, Devlin RH. Growth hormone transgenic salmon pay for growth potential with increased predation mortality. Proc R Soc B Biol Sci 2004; 271 (Suppl. 5): S350-S352.
69. Sundström LF, Lohmus M, Tymchuk WE, Devlin RH. Gene-environment interactions influence ecological consequences of transgenic animals. Proc Natl Acad Sci USA 2007; 104: 3889-94.
70. Swarup H. Production of triploidy in Gasterosteus aculeatus. J Genet 1959; 56: 129-42.
71. Thodesen J, Grisdale-Helland B, Helland SJ, Gjerde B. Feed intake, growth and feed utilization of offspring from wild and selected atlantic salmon (Salmo salar). Aquaculture 1999; 180: 237-46.
72. Thorgaard GH, Gall GAE. Adult triploids in a rainbow trout family. Genetics 1979; 93: 961-73.
73. Thorgaard GH, Bailey GS, Williams D, et al. Status and opportunities for genomics research with rainbow trout. Comp Biochem Physiol B 2002; 133: 609-46.
74. Vandeputte M. L'amélioration génétique de la carpe commune (Cyprinus carpio L.). Cah Agric 2009; 18: 256-61. Doi: 10.1684/agr.2009.0278
75. Vandeputte M, Kocour M, Mauger S, et al. Heritability estimates for growth-related traits using microsatellite parentage assignment in juvenile common carp (Cyprinus carpio L.). Aquaculture 2004; 235: 223-36.
76. Vandeputte M, Launey S. Quelle gestion génétique de la domestication chez les poissons ? Inra Prod Anim 2004; 17: 237-42.
77. Vandeputte M, Dupont-Nivet M, Chavanne H, Chatain B. A polygenic hypothesis for sex determination in the European sea bass Dicentrarchus labrax. Genetics 2007; 176: 1049-57.
78. Zhu et al, 1985 Zhu Z, Li G, He L, Chen S. Novel gene transfer into the fertilized eggs of goldfish (Carassius auratus L. 1758). Z Angew Ichthyol 1985; 1: 31-4.