-
1
-
-
0037771203
-
Host factors in positive-strand RNA virus genome replication
-
DOI 10.1128/JVI.77.15.8181-8186.2003
-
Ahlquist P, Noueiry AO, Lee WM, Kushner DB, Dye BT. 2003. Host factors in positive-strand RNA virus genome replication. J Virol 77: 8181-8186. (Pubitemid 36871445)
-
(2003)
Journal of Virology
, vol.77
, Issue.15
, pp. 8181-8186
-
-
Ahlquist, P.1
Noueiry, A.O.2
Lee, W.-M.3
Kushner, D.B.4
Dye, B.T.5
-
2
-
-
0032752998
-
Translating ribosomes inhibit poliovirus negative-strand RNA synthesis
-
Barton DJ, Morasco BJ, Flanegan JB. 1999. Translating ribosomes inhibit poliovirus negative-strand RNA synthesis. J Virol 73: 10104-10112.
-
(1999)
J Virol
, vol.73
, pp. 10104-10112
-
-
Barton, D.J.1
Morasco, B.J.2
Flanegan, J.B.3
-
3
-
-
0035868852
-
5′ Cloverleaf in poliovirus RNA is a cis-acting replication element required for negative strand synthesis
-
Barton DJ, O'Donnell J, Flanegan JB. 2001. 5′ Cloverleaf in poliovirus RNA is a cis-acting replication element required for negative strand synthesis. EMBO J 20: 1439-1448.
-
(2001)
EMBO J
, vol.20
, pp. 1439-1448
-
-
Barton, D.J.1
O'Donnell, J.2
Flanegan, J.B.3
-
4
-
-
33644869671
-
The hepatitis C virus 3′-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase
-
Bradrick SS, Walters RW, Gromeier M. 2006. The hepatitis C virus 3′-untranslated region or a poly(A) tract promote efficient translation subsequent to the initiation phase. Nucleic Acids Res 34: 1293-1303.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 1293-1303
-
-
Bradrick, S.S.1
Walters, R.W.2
Gromeier, M.3
-
5
-
-
20744431725
-
Control of translation by the 5′- And 3′ terminal regions of the Dengue virus genome
-
Chiu W-W, Kinney RM, Dreher TW. 2005. Control of translation by the 5′- and 3′ terminal regions of the Dengue virus genome. J Virol 79: 8303-8315.
-
(2005)
J Virol
, vol.79
, pp. 8303-8315
-
-
Chiu, W.-W.1
Kinney, R.M.2
Dreher, T.W.3
-
6
-
-
0037109209
-
IRES-driven translation is stimulated separately by the FMDV 3′-NCR and poly(A) sequences
-
De Quinto SL, Saiz M, de la Morena D, Sobrino F, Martinez-Salas E. 2002. IRES-driven translation is stimulated separately by the FMDV 3′-NCR and poly(A) sequences. Nucleic Acids Res 30: 4398-4405. (Pubitemid 35277250)
-
(2002)
Nucleic Acids Research
, vol.30
, Issue.20
, pp. 4398-4405
-
-
Lopez De Quinto, S.1
Saiz, M.2
De La Morena, D.3
Sobrino, F.4
Martinez-Salas, E.5
-
7
-
-
0344303621
-
Activity of a type 1 picornavirus internal ribosomal entry site is determined by sequences within the 3′ nontranslated region
-
Dobrikova E, Florez P, Bradrick S, Gromeier M. 2003. Activity of a type 1 picornavirus internal ribosomal entry site is determined by sequences within the 3′ nontranslated region. Proc Natl Acad Sci 100: 15125-15130.
-
(2003)
Proc Natl Acad Sci
, vol.100
, pp. 15125-15130
-
-
Dobrikova, E.1
Florez, P.2
Bradrick, S.3
Gromeier, M.4
-
8
-
-
0032695133
-
Functions of the 3′ untranslated regions of positive strand RNA viral genomes
-
Dreher TW. 1999. Functions of the 3′ untranslated regions of positive strand RNA viral genomes. Annu Rev Phytopathol 37: 151-174.
-
(1999)
Annu Rev Phytopathol
, vol.37
, pp. 151-174
-
-
Dreher, T.W.1
-
9
-
-
29144502178
-
Translational control in positive strand RNA plant viruses
-
Dreher TW, Miller WA. 2006. Translational control in positive strand RNA plant viruses. Virology 344: 185-197.
-
(2006)
Virology
, vol.344
, pp. 185-197
-
-
Dreher, T.W.1
Miller, W.A.2
-
10
-
-
33646797101
-
End-to-end communication in the modulation of translation by mammalian RNA viruses
-
DOI 10.1016/j.virusres.2005.10.012, PII S0168170205003254
-
Edgil D, Harris E. 2006. End-to-end communication in the modulation of translation by mammalian RNA viruses. Virus Res 119: 43-51. (Pubitemid 43765978)
-
(2006)
Virus Research
, vol.119
, Issue.1
, pp. 43-51
-
-
Edgil, D.1
Harris, E.2
-
11
-
-
33747344212
-
A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome
-
DOI 10.1101/gad.1444206
-
Filomatori CV, Lodeiro MF, Alvarez DE, Samsa MM, Pietrasanta L, Gamarnik AV. 2006. A 5′ RNA element promotes dengue virus RNA synthesis on a circular genome. Genes & Dev 20: 2238-2249. (Pubitemid 44244525)
-
(2006)
Genes and Development
, vol.20
, Issue.16
, pp. 2238-2249
-
-
Filomatori, C.V.1
Lodeiro, M.F.2
Alvarez, D.E.3
Samsa, M.M.4
Pietrasanta, L.5
Gamarnik, A.V.6
-
12
-
-
0035175362
-
Cis-acting RNA elements at the 5′ end of Sindbis virus genome RNA regulate minus- And plus-strand RNA synthesis
-
DOI 10.1017/S135583820101010X
-
Frolov I, Hardy R, Rice CM. 2001. cis-acting RNA elements at the 5′ end of Sindbis virus genome RNA regulate minus- and plus-strand RNA synthesis. RNA 7: 1638-1651. (Pubitemid 33078938)
-
(2001)
RNA
, vol.7
, Issue.11
, pp. 1638-1651
-
-
Frolov, I.1
Hardy, R.2
Rice, C.M.3
-
13
-
-
0032146721
-
Switch from translation to RNA replication in a positive-stranded RNA virus
-
Gamarnik AV, Andino R. 1998. Switch from translation to RNA replication in a positive-stranded RNA virus. Genes & Dev 12: 2293-2304. (Pubitemid 28371350)
-
(1998)
Genes and Development
, vol.12
, Issue.15
, pp. 2293-2304
-
-
Gamarnik, A.V.1
Andino, R.2
-
14
-
-
0035396727
-
Internal ribosome entry sites in eukaryotic mRNA molecules
-
DOI 10.1101/gad.891101
-
Hellen CU, Sarnow P. 2001. Internal ribosome entry sites in eukaryotic mRNA molecules. Genes & Dev 15: 1593-1612. (Pubitemid 32702581)
-
(2001)
Genes and Development
, vol.15
, Issue.13
, pp. 1593-1612
-
-
Hellen, C.U.T.1
Sarnow, P.2
-
15
-
-
33747602081
-
RNA structural motifs: Building blocks of a modular biomolecule
-
Hendrix DK, Brenner SE, Holbrook SR. 2005. RNA structural motifs: Building blocks of a modular biomolecule. Q Rev Biophys 38: 221-243.
-
(2005)
Q Rev Biophys
, vol.38
, pp. 221-243
-
-
Hendrix, D.K.1
Brenner, S.E.2
Holbrook, S.R.3
-
16
-
-
0242473186
-
Members of the NF90/NFAR protein group are involved in the life cycle of a positive-strand RNA virus
-
DOI 10.1093/emboj/cdg562
-
Isken O, Grassmann CW, Sarisky RT, Kann M, Zhang S, Grosse F, Kao PN, Behrens SE. 2003. Members of the NF90/NFAR protein group are involved in the life cycle of a positive-strand RNA virus. EMBO J 22: 5655-5665. (Pubitemid 37408806)
-
(2003)
EMBO Journal
, vol.22
, Issue.21
, pp. 5655-5665
-
-
Isken, O.1
Grassmann, C.W.2
Sarisky, R.T.3
Kann, M.4
Zhang, S.5
Grosse, F.6
Kao, P.N.7
Behrens, S.-E.8
-
17
-
-
4644233409
-
Complex signals in the genomic 3′ nontranslated region of bovine viral diarrhea virus coordinate translation and replication of the viral RNA
-
DOI 10.1261/rna.7290904
-
Isken O, Grassmann CW, Yu H, Behrens SE. 2004. Complex signals in the genomic 3′ nontranslated region of bovine viral diarrhea virus coordinate translation and replication of the viral RNA. RNA 10: 1637-1652. (Pubitemid 39288197)
-
(2004)
RNA
, vol.10
, Issue.10
, pp. 1637-1652
-
-
Isken, O.1
Grassmann, C.W.2
Yu, H.3
Behrens, S.-E.4
-
18
-
-
38649130986
-
Translation mechanisms involving long-distance base pairing interactions between the 5′ and 3′ non-translated regions and internal ribosomal entry are conserved for both genomic RNAs of Blackcurrant reversion nepovirus
-
DOI 10.1016/j.virol.2007.10.003, PII S0042682207006575
-
Karetnikov A, Lehto K. 2008. Translation mechanisms involving long-distance base pairing interactions between the 5′ and 3′ nontranslated regions and internal ribosomal entry are conserved for both genomic RNAs of Blackcurrant reversion nepovirus. Virology 371: 292-308. (Pubitemid 351173230)
-
(2008)
Virology
, vol.371
, Issue.2
, pp. 292-308
-
-
Karetnikov, A.1
Lehto, K.2
-
20
-
-
0031277666
-
Satellite RNA-mediated resistance to turnip crinkle virus in Arabidopsis involves a reduction in virus movement
-
DOI 10.1105/tpc.9.11.2051
-
Kong Q, Wang J, Simon AE. 1997. Satellite RNA-mediated resistance to Turnip crinkle virus in Arabidopsis involves a reduction in virus movement. Plant Cell 9: 2051-2063. (Pubitemid 28174076)
-
(1997)
Plant Cell
, vol.9
, Issue.11
, pp. 2051-2063
-
-
Kong, Q.1
Wang, J.2
Simon, A.E.3
-
21
-
-
0033061571
-
Initiation of translation in prokaryotes and eukaryotes
-
Kozak M. 1999. Initiation of translation in prokaryotes and eukaryotes. Gene 234: 187-208.
-
(1999)
Gene
, vol.234
, pp. 187-208
-
-
Kozak, M.1
-
22
-
-
29844453234
-
Topology of three-way junctions in folded RNAs
-
DOI 10.1261/rna.2208106
-
Lescoute A, Westhof E. 2006. Topology of three-way junctions in folded RNAs. RNA 12: 83-93. (Pubitemid 43037456)
-
(2006)
RNA
, vol.12
, Issue.1
, pp. 83-93
-
-
Lescoute, A.1
Westhof, E.2
-
23
-
-
25644436944
-
Translation initiation: Structures, mechanisms and evolution
-
DOI 10.1017/S0033583505004026, PII S0033583505004026
-
Marintchev A, Wagner G. 2004. Translation initiation: Structures, mechanisms, and evolution. Q Rev Biophys 37: 197-284. (Pubitemid 41379756)
-
(2004)
Quarterly Reviews of Biophysics
, vol.37
, Issue.3-4
, pp. 197-284
-
-
Marintchev, A.1
Wagner, G.2
-
24
-
-
50149094450
-
Structural domains within the 3′ UTR of Turnip crinkle virus
-
McCormack JC, Yuan X, Yingling YG, Zamora RE, Shapiro BA, Simon AE. 2008. Structural domains within the 3′ UTR of Turnip crinkle virus. J Virol 82: 8706-8720.
-
(2008)
J Virol
, vol.82
, pp. 8706-8720
-
-
McCormack, J.C.1
Yuan, X.2
Yingling, Y.G.3
Zamora, R.E.4
Shapiro, B.A.5
Simon, A.E.6
-
25
-
-
2442466927
-
Cap-dependent and cap-independent translation in eukaryotic systems
-
Merrick WC. 2004. Cap-dependent and cap-independent translation in eukaryotic systems. Gene 332: 1-11.
-
(2004)
Gene
, vol.332
, pp. 1-11
-
-
Merrick, W.C.1
-
26
-
-
28544434886
-
Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis
-
DOI 10.1128/MCB.25.24.10863-10874.2005
-
Meskauskas A, Petrov AN, Dinman JD. 2005. Identification of functionally important amino acids of ribosomal protein L3 by saturation mutagenesis. Mol Cell Biol 25: 10863-10874. (Pubitemid 41747131)
-
(2005)
Molecular and Cellular Biology
, vol.25
, Issue.24
, pp. 10863-10874
-
-
Meskauskas, A.1
Petrov, A.N.2
Dinman, J.D.3
-
27
-
-
33748945417
-
Long-distance RNA-RNA interactions in plant virus gene expression and replication
-
DOI 10.1146/annurev.phyto.44.070505.143353
-
Miller WA, White KA. 2006. Long-distance RNA-RNA interactions in plant virus gene expression and replication. Annu Rev Phytopathol 44: 447-467. (Pubitemid 44435712)
-
(2006)
Annual Review of Phytopathology
, vol.44
, pp. 447-467
-
-
Miller, W.A.1
White, K.A.2
-
28
-
-
37749006919
-
The amazing diversity of cap-independent translation elements in the 3′-untranslated regions of plant viral RNAs
-
Miller WA, Wang Z, Treder K. 2007. The amazing diversity of cap-independent translation elements in the 3′-untranslated regions of plant viral RNAs. Biochem Soc Trans 35: 1629-1633.
-
(2007)
Biochem Soc Trans
, vol.35
, pp. 1629-1633
-
-
Miller, W.A.1
Wang, Z.2
Treder, K.3
-
29
-
-
31944444206
-
Structure and prevalence of replication silencer-3′ terminus RNA interactions in Tombusviridae
-
DOI 10.1016/j.virol.2005.09.008, PII S0042682205005696
-
Na H, White KA. 2006. Structure and prevalence of replication silencer-3′ terminus RNA interactions in Tombusviridae. Virology 345: 305-316. (Pubitemid 43189892)
-
(2006)
Virology
, vol.345
, Issue.2
, pp. 305-316
-
-
Na, H.1
White, K.A.2
-
30
-
-
29144528061
-
Yeast as a model host to dissect functions of viral and host factors in tombusvirus replication
-
DOI 10.1016/j.virol.2005.09.017, PII S0042682205005866
-
Nagy PD, Pogany J. 2006. Yeast as a model host to dissect functions of viral and host factors in tombusvirus replication. Virology 344: 211-220. (Pubitemid 41814463)
-
(2006)
Virology
, vol.344
, Issue.1
, pp. 211-220
-
-
Nagy, P.D.1
Pogany, J.2
-
31
-
-
23244453197
-
Role of an internal and two 3′-terminal RNA elements in assembly of tombusvirus replicase
-
DOI 10.1128/JVI.79.16.10608-10618.2005
-
Panaviene Z, Panavas T, Nagy PD. 2005. Role of an internal and two 3′-terminal RNA elements in assembly of tombusvirus replicase. J Virol 79: 10608-10618. (Pubitemid 41098600)
-
(2005)
Journal of Virology
, vol.79
, Issue.16
, pp. 10608-10618
-
-
Panaviene, Z.1
Panavas, T.2
Nagy, P.D.3
-
32
-
-
0344758983
-
Starting the protein synthesis machine: Eukaryotic translation initiation
-
DOI 10.1002/bies.10362
-
Preiss T, Hentze MW. 2003. Starting the protein synthesis machine: Eukaryotic translation initiation. Bioessays 25: 1201-1211. (Pubitemid 37499320)
-
(2003)
BioEssays
, vol.25
, Issue.12
, pp. 1201-1211
-
-
Preiss, T.1
Hentze, M.W.2
-
33
-
-
0142041877
-
A replication silencer element in a plus-strand RNA virus
-
DOI 10.1093/emboj/cdg523
-
Pogany J, Fabian MR, White KA, Nagy PD. 2003. A replication silencer element in a plus-strand RNA virus. EMBO J 22: 5602-5611. (Pubitemid 37279969)
-
(2003)
EMBO Journal
, vol.22
, Issue.20
, pp. 5602-5611
-
-
Pogany, J.1
Fabian, M.R.2
White, K.A.3
Nagy, P.D.4
-
34
-
-
0342632782
-
Cap-independent translational enhancement of turnip crinkle virus genomic and subgenomic RNAs
-
DOI 10.1128/JVI.74.3.1085-1093.2000
-
Qu F, Morris TJ. 2000. Cap-independent translational enhancement of Turnip crinkle virus genomic and subgenomic RNAs. J Virol 74: 1085-1093. (Pubitemid 30044057)
-
(2000)
Journal of Virology
, vol.74
, Issue.3
, pp. 1085-1093
-
-
Qu, F.1
Jack Morris, T.2
-
35
-
-
0036147983
-
Comparison of Turnip crinkle virus RNA-dependent RNA polymerase preparations expressed in Escherichia coli or derived from infected plants
-
DOI 10.1128/JVI.76.4.1707-1717.2002
-
Rajendran KS, Pogany J, Nagy PD. 2002. Comparison of Turnip crinkle virus RNA-dependent RNA polymerase preparations expressed in Escherichia coli or derived from infected plants. J Virol 76: 1707-1717. (Pubitemid 34094618)
-
(2002)
Journal of Virology
, vol.76
, Issue.4
, pp. 1707-1717
-
-
Rajendran, K.S.1
Pogany, J.2
Nagy, P.D.3
-
36
-
-
0037166262
-
Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit
-
DOI 10.1074/jbc.M108902200
-
Schäfer MA, Tastan AO, Patzke S, Blaha G, Spahn CMT, Wilson DN, Nierhaus KH. 2002. Codon-anticodon interaction at the P site is a prerequisite for tRNA interaction with the small ribosomal subunit. J Biol Chem 277: 19095-19105. (Pubitemid 34952475)
-
(2002)
Journal of Biological Chemistry
, vol.277
, Issue.21
, pp. 19095-19105
-
-
Schafer, M.A.1
Tastan, A.O.2
Patzke, S.3
Blaha, G.4
Spahn, C.M.T.5
Wilson, D.N.6
Nierhaus, K.H.7
-
38
-
-
0028786430
-
Requirement of a 3′-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase
-
Song C, Simon AE. 1995. Requirement of a 3′-terminal stem-loop in in vitro transcription by an RNA-dependent RNA polymerase. J Mol Biol 254: 6-14.
-
(1995)
J Mol Biol
, vol.254
, pp. 6-14
-
-
Song, C.1
Simon, A.E.2
-
39
-
-
33751203577
-
The hepatitis C virus RNA 3′-untranslated region strongly enhances translation directed by the internal ribosome entry site
-
DOI 10.1128/JVI.00675-06
-
Song Y, Friebe P, Tzima E, Jünemann C, Bartenschlager R, Niepmann M. 2006. The hepatitis C virus RNA 3′-untranslated region strongly enhances translation directed by the internal ribosome entry site. J Virol 80: 11579-11588. (Pubitemid 44788872)
-
(2006)
Journal of Virology
, vol.80
, Issue.23
, pp. 11579-11588
-
-
Song, Y.1
Friebe, P.2
Tzima, E.3
Junemann, C.4
Bartenschlager, R.5
Niepmann, M.6
-
40
-
-
55549137084
-
The 3′ proximal translational enhancer of Turnip crinkle virus Binds to 60S ribosomal subunits
-
Stupina VA, Meskauskas A, McCormack JC, Yingling YG, Kasprzak W, Shapiro BA, Dinman JD, Simon AE. 2008. The 3′ proximal translational enhancer of Turnip crinkle virus Binds to 60S ribosomal subunits. RNA 14: 2379-2393.
-
(2008)
RNA
, vol.14
, pp. 2379-2393
-
-
Stupina, V.A.1
Meskauskas, A.2
McCormack, J.C.3
Yingling, Y.G.4
Kasprzak, W.5
Shapiro, B.A.6
Dinman, J.D.7
Simon, A.E.8
-
41
-
-
33746473117
-
A cis-replication element functions in both orientations to enhance replication of Turnip crinkle virus
-
DOI 10.1016/j.virol.2006.03.051, PII S0042682206001796
-
Sun X, Simon AE. 2006. A cis-replication element functions in both orientations to enhance replication of Turnip crinkle virus. Virology 352: 39-51. (Pubitemid 44142682)
-
(2006)
Virology
, vol.352
, Issue.1
, pp. 39-51
-
-
Sun, X.1
Simon, A.E.2
-
43
-
-
34249859415
-
H/ACA small nucleolar RNA pseudouridylation pockets bind substate RNA to form three-way junctions that position the target U for modification
-
Wu H, Feigon J. 2007. H/ACA small nucleolar RNA pseudouridylation pockets bind substate RNA to form three-way junctions that position the target U for modification. Proc Natl Acad Sci 104: 6655-6660.
-
(2007)
Proc Natl Acad Sci
, vol.104
, pp. 6655-6660
-
-
Wu, H.1
Feigon, J.2
-
44
-
-
40149105692
-
Cis- And trans-acting functions of brome mosaic virus protein 1a in genomic RNA1 replication
-
DOI 10.1128/JVI.02390-07
-
Yi G, Kao CC. 2008. cis- and trans-acting functions of Brome mosaic virus protein 1a in genomic RNA1 replication. J Virol 82: 3045-3053. (Pubitemid 351329192)
-
(2008)
Journal of Virology
, vol.82
, Issue.6
, pp. 3045-3053
-
-
Yi, G.1
Kao, C.2
-
45
-
-
2642525996
-
The Arabidopsis Cucumovirus Multiplication 1 and 2 loci encode translation initiation factors 4E and 4G
-
DOI 10.1128/JVI.78.12.6102-6111.2004
-
Yoshii M, Nishikiori M, Tomita K, Yoshioka N, Kozuka R, Naito S, Ishikawa M. 2004. The Arabidopsis cumumovirus multiplication 1 and 2 loci encode translation initiation factors 4E and 4G. J Virol 78: 6102-6111. (Pubitemid 38715908)
-
(2004)
Journal of Virology
, vol.78
, Issue.12
, pp. 6102-6111
-
-
Yoshii, M.1
Nishikiori, M.2
Tomita, K.3
Yoshioka, N.4
Kozuka, R.5
Naito, S.6
Ishikawa, M.7
-
46
-
-
3142724933
-
Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon
-
DOI 10.1128/JVI.78.14.7619-7633.2004
-
Zhang G, Zhang J, Simon AE. 2004. Repression and derepression of minus-strand synthesis in a plus-strand RNA virus replicon. J Virol 78: 7619-7633. (Pubitemid 38915909)
-
(2004)
Journal of Virology
, vol.78
, Issue.14
, pp. 7619-7633
-
-
Zhang, G.1
Zhang, J.2
Simon, A.E.3
-
47
-
-
33746275193
-
Evolution of virus-derived sequences for high-level replication of a subviral RNA
-
DOI 10.1016/j.virol.2006.03.011, PII S0042682206001747
-
Zhang J, Zhang G, McCormack JC, Simon AE. 2006. Evolution of virus-derived sequences for high level replication of a subviral RNA. Virology 351: 476-488. (Pubitemid 44108061)
-
(2006)
Virology
, vol.351
, Issue.2
, pp. 476-488
-
-
Zhang, J.1
Zhang, G.2
McCormack, J.C.3
Simon, A.E.4
|