Genetic analysis of mycosphaerella fijiensis in the Ugandan Lake Victoria region

Plant Pathology

Volumn 58, Issue 5, 2009, Pages 888-897

  Fahleson, J ^b   Nakyanzi, M ^a   Okori, P ^c   Seal, S ^a   Kenyon, L ^a   Dixelius, C ^b  

^a UNIVERSITY OF GREENWICH   (United Kingdom)

^b SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^c MAKERERE UNIVERSITY   (Uganda)

Author keywords

tubulin gene sequence; Amova; Benomyl resistance; Black Sigatoka; Genetic variability; Musa spp.

Indexed keywords

FOUNDER EFFECT; FUNGUS; GENETIC ANALYSIS; GENETIC DIFFERENTIATION; GENETIC MARKER; GENETIC VARIATION; LAKE; POLYMORPHISM; POPULATION STRUCTURE;

AFRICA; EAST AFRICA; EAST AFRICAN LAKES; LAKE VICTORIA; SUB-SAHARAN AFRICA; UGANDA;

MUSA; MYCOSPHAERELLA FIJIENSIS;

EID: 70249145520     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2009.02099.x     Document Type: Article

References (47)

1. Arzanlou M, Abeln ECA, Kema GHJ et al., 2007. Molecular diagnostics for the Sigatoka disease complex of banana. Phytopathology 97, 1112 1118.
2. Banana Research Network for East and Southern Africa (BARNESA), 1998. Proceedings of Workshop on Banana Baseline Information Projects in Eastern and Southern Africa, Kampala, Uganda, 15-18 February 1998.
3. Canas-Gutiérrez GP, Patino LF, Rodriguez-Arango E, Arango R 2006. Molecular characterization of benomyl-resistant isolates of Mycosphaerella fijiensis, collected in Colombia. Journal of Phytopathology 154, 403 409.
4. Carlier J, Lebrun MH, Zapater MF, Dubois C, Mourichon X, 1996. Genetic structure of the global population of banana black leaf streak fungus, Mycosphaerella fijiensis. Molecular Ecology 5, 499 510.
5. Carlier J, Foure E, Gauhl F et al., 2000a. Black leaf streak. In : Jones DR, ed. Diseases of Banana, Abaca and Enset. Wallingford, UK : CAB International, 37 79.
6. Carlier J, Zapater MF, Lapeyre F, Jones DR, Mourichon X, 2000b. Septoria leaf spot of banana: a newly discovered disease caused by Mycosphaerella eumusae. Phytopathology 90, 884 890.
7. Carlier J, de Waele D, Escalent JV, 2003. Global evaluation of Musa germplasm for resistance to Fusarium wilt, Mycosphaerella leaf spot diseases and nematodes. Performance evaluation. In : Vézina A, Picq C, eds. INIBAP Technical Guidelines 7. Montpellier, France : International Network for the Improvement of Banana and Plantain (INIBAP).
8. Chen RS, Boeger JM, McDonald BA, 1994. Genetic stability in a population of a plant pathogenic fungus over time. Molecular Ecology 3, 209 218.
9. Conde-Ferráez L, Waalwijk C, Canto-Canché BB et al., 2007. Isolation and characterization of the mating type locus of Mycosphaerella fijiensis, the causal agent of black leaf streak disease banana. Molecular Plant Pathology 8, 111 120.
10. Craenen K, Ortiz R, 1997. Effect of bs1 gene in plantain-banana hybrids in response to black Sigatoka. Theoretical and Applied Genetics 95, 497 505.
11. Davidse LC, 1986. Benzimidazole fungicides: mechanism of action and biological impact. Annual Review of Phytopathology 24, 43 65.
12. Excoffier L, Smouse PE, Quattro JM, 1992. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. Genetics 131, 471 491.
13. FAO, 2006. FAO Statistical Yearbook 2005-2006, Volume 1 and 2. Rome, Italy : Food and Agriculture Organization.
14. Felsenstein J, 1999. Phylip (Phylogeny Inference Package) Version 3.6 Alpha. Seattle, WA, USA : University of Washington, Department of Genetics.
15. Fullerton RA, Olsen TL, 1995. Pathogenic variability in Mycosphaerella fijiensis Morelet, cause of black Sigatoka in banana and plantain. New Zealand Journal of Crop and Horticultural Sciences 23, 39 48.
16. Gold CS, Ogenga-Latigo MW, Tushemereirwe WK, Kashaija IN, Nankinga C, 1993. Farmer perceptions of banana pest constrains in Uganda: results from a rapid rural appraisal. In : Gold CS, Gemmill B, eds. Biological and Integrated Control of Highland Banana and Plantain Pests and Diseases. Cotonou, Benin : IITA, 5 24.
17. Grünwald NJ, Goodwin SB, Milgroom MG, Fry WE, 2003. Analysis of genotypic diversity data for populations of microorganisms. Phytopathology 93, 738 746.
18. Hayden HL, Carlier J, Aitken JEB, 2005. The genetic structure of Australian populations of Mycosphaerella musicola suggests restricted gene flow at the continental scale. Phytopathology 95, 489 498.
19. Holm S, 1979. A simple sequentially rejective multiple test procedure. Scandinavian Journal of Statistics 6, 65 70.
20. INIBAP, 2001. International Network for the Improvement of Banana and Plantain, Annual Report. Montpellier, France : INIBAP.
21. Jeger MJ, Eden-Green S, Thresh JM, Johanson A, Waller JM, Brown AE, 1995. Banana diseases. In : Gowen S, ed. Bananas and Plantains. London, UK : Chapman & Hall, 317 381.
22. Koenraadt H, Somerville SC, Jones L, 1992. Characterisation of mutations in the beta-tubulin gene of benomyl-resistant field strains of Ventura inaequalis and other plant pathogenic fungi. Phytopathology 82, 1348 1354.
23. Michener CD, Sokal RR, 1957. A quantitative approach to a problem in classification. Evolution 11, 130 162.
24. Mourichon X, Fullerton RA, 1990. Geographical distribution of the two species Mycosphaerella musicola Leach (Cercospora musae) and M. fijiensis Morelet (C. fijiensis), respectively agents of Sigatoka disease and black leaf streak disease in bananas and plantains. Fruits 45, 213 218.
25. Mourichon X, Zapapter MF, 1990. Obtention in vitro du stade Mycosphaerella fijiensis forme parafaite de Cercospora fijiensis. Fruits 45, 553 557.
26. Mourichon X, Carlier J, Fouré E, 1997. Sigatoka Leaf Spot Diseases: Blackleaf Streak Disease (Black Sigatoka). Yellow Leaf Streak Disease (Yellow Sigatoka). Montpellier, France : INIBAP: Musa Fact Sheet No. 8.
27. Nakyanzi M, 2002. Molecular and Pathogenic Diversity of Isolates of Mycosphaerella fijiensis That Cause Black Sigatoka Disease of Bananas in East Africa. Chatham, UK : University of Greenwich, PhD thesis.
28. Nei M, Li WH, 1979. Mathematical model for studying genetic variation in terms of restriction endonuclease. Proceedings of the National Academy of Sciences, USA 76, 5269 5273.
29. Neu C, Kaemmer D, Kahl G, Fischer D, Weising K, 1999. Polymorphic microsatellite markers for the banana pathogen Mycosphaerella fijiensis. Molecular Ecology 8, 523 525.
30. Noupadja P, Tomekopé K, 2001. Agronomic performance of IITA's improved Musa germplasm at CRBP, Njombé, Cameroon. African Crop Science Journal 9, 481 486.
31. Page RDM, 1996. treeview: an application to display phylogenetic trees on personal computers. Computer Applications in the Bioscience 12, 357 358.
32. Ploetz R, 2000. Black Sigatoka. Pesticides Outlook 11, 19 23.
33. Raymond M, Rousset F, 1995. An exact test for population differentiation. Evolution 49, 1280 1283.
34. Rivas GG, Zapater MF, Abadie C, Carlier J, 2004. Founder effects and stochastic dispersal at the continental scale of the fungal pathogen of bananas Mycosphaerella fijiensis. Molecular Ecology 13, 471 482.
35. Rodríguez RA, Jiménez LG, 1985. El Problema de la Tolerancia de Mycosphaerella fijiensis al Fungicida Benomil en Plantaciones Bananeras de Costa Rica. San José, Costa Rica : Departamento de Investigaciones, Associación Bananera Nacional: Boletín No. 2.
36. Romero RA, 2003. The distribution and importance of the Mycosphaerella leaf spot diseases of banana. In : Jacome L, Lepoivre P, Marin D, Romero RA, Escalant JV, eds. Proceedings of the 2nd International Workshop on Mycosphaerella Leaf Spot Diseases, San José, Costa Rica, 21 4.
37. Romero RA, Sutton T, 1998. Characterization of benomyl resistance in Mycosphaerella fijiensis, cause of black sigatoka of banana, in Costa Rica. Plant Disease 82, 931 934.
38. Schneider S, Roessli D, Excoffier L, 2000. Arlequin ver. 2·000: A Software for Population Genetics Data Analysis. Geneva, Switzerland : University of Geneva.
39. Stoddart JA, Taylor JF, 1988. Genotypic diversity: estimation and prediction in samples. Genetics 118, 705 711.
40. Stover RH, 1977. Behaviour of Benomyl tolerant strains of the black Sigatoka pathogen in the field. Proceedings of the American Phytopathological Society 4, 180 181.
41. Stover RH, Simmonds NW, 1987. Bananas, 3rd edn. Harlow, UK : Longman Scientific and Technical.
42. Tushemereirwe WK, Waller JM, 1993. Black leaf spot (Mycosphaerella fijiensis) and associated foliar diseases of bananas in Uganda. Plant Pathology 42, 471 472.
43. Vuylsteke D, Swennen R, Ortiz R, 1993. Development and performance of black Sigatoka-resistant tetraploid hybrids of plantain (Musa spp. AAB group). Euphytica 65, 33 42.
44. Vuylsteke D, Ortiz R, Ferris S, Swennen R, 1995. PITA-9: a black Sigatoka-resistant hybrid from the false horn plantain gene pool. Horticultural Science 30, 395 397.
45. Weir BS, Cockerham CC, 1984. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358 1370.
46. Yomcwiny OM, 2006. Sensitivity of Mycophaerella fijiensis, the Causal Agent of Black Sigatoka to Fungicides Commonly Used in Uganda. Kampala, Uganda : Makerere University, BSc thesis.
47. Zapater MF, Rakonantoandro A, Cohen S, Carlier J, 2004. Polymerase chain reaction-restriction fragment length polymorphism markers for the fungal banana pathogen Mycosphaerella fijiensis. Molecular Ecology Notes 4, 80 2.