Comparative study of genetic diversity of Clavibacter michiganensis subsp. Michiganensis isolates from the Canary Islands by RAPD-PCR, BOX-PCR and AFLP

Plant Pathology

Volumn 58, Issue 5, 2009, Pages 862-871

  De Leon L ^a   Rodriguez A ^a,b   Llop, P ^c   Lopez M M ^c   Siverio, Felipe ^d  

^a INSTITUTO CANARIO DE INVESTIGACIONES AGRARIAS   (Spain)

^b UNIVERSIDAD DE LA LAGUNA   (Spain)

^c INSTITUTO VALENCIANO DE INVESTIGACIONES AGRARIAS IVIA   (Spain)

^d Laboratorio de Sanidad Vegetal   (Spain)

Author keywords

Cluster analysis; PCR RFLP; Quarantine bacteria; Rep PCR; Solanum lycopersicum; Tomato bacterial canker

Indexed keywords

BACTERIUM; COMPARATIVE STUDY; GENETIC VARIATION; ISLAND; MOLECULAR ANALYSIS; POLYMERASE CHAIN REACTION; POLYMORPHISM;

ATLANTIC ISLANDS; ATLANTIC OCEAN; CANARY ISLANDS; EURASIA; EUROPE; MACARONESIA; NORTH AMERICA; SOUTHERN EUROPE; SPAIN; UNITED STATES;

BACTERIA (MICROORGANISMS); CLAVIBACTER MICHIGANENSIS SUBSP. MICHIGANENSIS; LYCOPERSICON ESCULENTUM; SOLANUM;

EID: 70249120742     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2009.02117.x     Document Type: Article

References (34)

1. Anonymous, 2000. Council Directive 2000/29/EC of 8 May 2000 on protective measures against the introduction into the Community of organisms harmful to plants or plant products and against their spread within the Community. Office for Official Publications of the European Communities. Consolidated Text, 1-139.
2. Chang RJ, Ries SM, Pataky JK, 1991. Dissemination of Clavibacter michiganensis subsp. michiganensis by practices used to produce tomato transplants. Phytopathology 81, 1276 1281.
3. Chang RJ, Ries SM, Pataky JK, 1992. Local sources of Clavibacter michiganensis subsp. michiganensis in the development of bacterial canker on tomatoes. Phytopathology 82, 553 560.
4. Davis MJ, Vidaver AK, 2001. Gram positive bacteria coryneform plant pathogens. In : Schaad NW, Jones JB, Chun W, eds. Laboratory Guide for Identification of Plant Pathogenic Bacteria, 3rd edn. St. Paul, MN, USA : APS Press, 218 235.
5. De León L, Siverio F, Rodríguez A, 2006. Detection of Clavibacter michiganensis subsp. michiganensis in tomato seeds using immunomagnetic separation. Journal of Microbiological Methods 67, 141 149.
6. Dreier J, Bermpohl A, Eichenlaub R, 1995. Southern hybridization and PCR for specific detection of phytopathogenic Clavibacter michiganensis subsp. michiganensis. Phytopathology 85, 462 468.
7. Eichenlaub R, Gartemann K-H, Burger A, 2006. Clavibacter michiganensis, a group of Gram-positive phytopathogenic bacteria. In : Gnanamanickam SS, ed. Plant-Associated Bacteria. Dordrecht, the Netherlands : Springer, 385 421.
8. EPPO 2005. Clavibacter michiganensis subsp. michiganensis. EPPO Bulletin 35, 275 283.
9. Fatmi M, Schaad NW, 2002. Survival of Clavibacter michiganensis subsp. michiganensis in infected tomato stems under natural field conditions in California, Ohio and Morocco. Plant Pathology 51, 149 154.
10. Gleason ML, Braun EJ, Carlton WM, Peterson RH, 1991. Survival and dissemination of Clavibacter michiganensis subsp. michiganensis in tomatoes. Phytopathology 81, 1519 1523.
11. Gleason ML, Gitaitis RD, Ricker MD, 1993. Recent progress in understanding and controlling bacterial canker of tomato in eastern North America. Plant Disease 77, 1069 1076.
12. Hadas R, Kritzman G, Klietman F, Gefen T, Manulis S, 2005. Comparison of extraction procedures and determination of the detection threshold for Clavibacter michiganensis ssp. michiganensis in tomato seeds. Plant Pathology 54, 643 649.
13. Kleitman F, Barash I, Burger A, et al. 2008. Characterization of a Clavibacter michiganensis subsp. michiganensis population in Israel. European Journal of Plant Pathology 121, 463 475.
14. Lee IM, Bartoszyk IM, Gundersen-Rindal DE, Davis RE, 1997. Phylogeny and classification of bacteria in the genera Clavibacter and Rathayibacter on the basis of 16S rRNA gene sequence analyses. Applied and Environmental Microbiology 63, 2631 2636.
15. Li X, De Boer SH, 1995. Comparison of 16S ribosomal RNA genes in Clavibacter michiganensis subspecies with other coryneform bacteria. Canadian Journal of Microbiology 41, 925 929.
16. López MM, Salcedo CI, Pérez MA, 1985. Caracterí sticas de aislados españoles de Corynebacterium michiganense pathovar michiganense y de Xanthomonas campestris pathovar vesicatoria. Anales del Instituto Nacional de Investigaciones Agrarias. Serie Agrícola 28, 235 243.
17. Louws FJ, Bell J, Medina-Mora CM et al., 1998. Rep-PCR-mediated genomic fingerprinting: a rapid and effective method to identify Clavibacter michiganensis. Phytopathology 88, 862 868.
18. McDonald JG, Wong E, 2000. High diversity in Curtobacterium flaccumfaciens pv. flaccumfaciens characterized by serology and rep-PCR genomic fingerprinting. Canadian Journal of Plant Pathology 22, 17 22.
19. McKeen CD, 1973. Occurrence, epidemiology, and control of bacterial canker of tomato in southwestern Ontario. Canadian Plant Disease Survey 53, 127 130.
20. Nazari F, Niknam GR, Ghasemi A, Taghavi SM, Momeni H, Torabi S, 2007. An investigation on strains of Clavibacter michiganensis subsp. michiganensis in North and North West of Iran. Journal of Phytopathology 155, 563 569.
21. Pastrik K-H, Rainey FA, 1999. Identification and differentiation of Clavibacter michiganensis subspecies by polymerase chain reaction-based techniques. Journal of Phytopathology 147, 687 693.
22. Ponsonnet C, Nesme X, 1994. Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions. Archives of Microbiology 161, 300 309.
23. Sahin F, Uslu H, Kotan R, Donmez MF, 2002. Bacterial canker, caused by Clavibacter michiganensis ssp. michiganensis, on tomatoes in eastern Anatolia region of Turkey. Plant Pathology 51, 399.
24. Sherf AF, Macnab AA, 1986. Vegetable Diseases and their Control, 2nd edn. New York, USA : John Wiley and Sons.
25. Smith EF, 1914. The Grand Rapids tomato disease. In : Smith EF, ed. Bacteria in Relation to Plant Diseases. Washington, DC, USA : Carnegie Institute, 161 165.
26. Smith NC, Hennessy J, Stead DE, 2001. Repetitive sequence-derived PCR profiling using the BOX-A1R primer for rapid identification of the plant pathogen Clavibacter michiganensis subspecies sepedonicus. European Journal of Plant Pathology 107, 739 748.
27. Strider DL, 1969. Bacterial canker of tomato caused by Corynebacterium michiganense. A literature review and bibliography. North Carolina Agricultural Experiment Station Technical Bulletin 193. Raleigh, NC, USA : NCAES.
28. Tailliez P, Quénée P, Chopin A, 1996. Estimation de la diversité parmi les souches de la collection CNRZ: application de la RAPD à un groupe de lactobacilles. Le Latí 76, 147 158.
29. Thyr BD, 1969. Assaying tomato seeds for Corynebacterium michiganensis. Plant Disease Reporter 5, 858 860.
30. Tsiantos J, 1987. Transmission of the bacterium Corynebacterium michiganense pv. michiganense by seeds. Journal of Phytopathology 119, 142 146.
31. Van de Peer Y, De Wachter R, 1994. TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment. Computer Applications in the Biosciences 10, 569 570.
32. Vega E, Ureta T, Campos G, 2001. Aumento de la incidencia de Clavibacter michiganensis subsp. michiganensis, agente causal de la enfermedad cancro bacteriano del tomate, en el cultivo de tomate de la última temporada. Simientes 71, 33 73.
33. Vos P, Hogers R, Bleeker M et al., 1995. AFLP: a new technique for DNA fingerprinting. Nucleic Acids Research 23, 4407 4414.
34. Waters CM, Bolkan HA, 1992. An improved selective medium and method of extraction for detecting Clavibacter michiganensis subsp. michiganensis in tomato seeds. Phytopathology 82, 1072. [abstract]