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Volumn 4, Issue 9, 2009, Pages 1262-1273

Designing and using synthetic RNA thermometers for temperature-controlled gene expression in bacteria

Author keywords

[No Author keywords available]

Indexed keywords

CIS ACTING ELEMENT; DNA; MESSENGER RNA; RNA; TRANS ACTING FACTOR;

EID: 70249114776     PISSN: 17542189     EISSN: 17502799     Source Type: Journal    
DOI: 10.1038/nprot.2009.112     Document Type: Article
Times cited : (31)

References (32)
  • 1
    • 2942560804 scopus 로고    scopus 로고
    • Gene regulation by riboswitches
    • Mandal, M. & Breaker, R.R. Gene regulation by riboswitches. Nature Rev. 5, 451-463 (2004).
    • (2004) Nature Rev , vol.5 , pp. 451-463
    • Mandal, M.1    Breaker, R.R.2
  • 2
    • 27144527479 scopus 로고    scopus 로고
    • Regulation of bacterial gene expression by riboswitches
    • Winkler, W.C. & Breaker, R.R. Regulation of bacterial gene expression by riboswitches. Annu. Rev. Microbiol. 59, 487-517 (2005).
    • (2005) Annu. Rev. Microbiol , vol.59 , pp. 487-517
    • Winkler, W.C.1    Breaker, R.R.2
  • 3
    • 34548778155 scopus 로고    scopus 로고
    • Ribozymes, riboswitches and beyond: Regulation of gene expression without proteins
    • Serganov, A. & Patel, D.J. Ribozymes, riboswitches and beyond: regulation of gene expression without proteins. Nature Rev. Genet. 8, 776-790 (2007).
    • (2007) Nature Rev. Genet , vol.8 , pp. 776-790
    • Serganov, A.1    Patel, D.J.2
  • 4
    • 58049217240 scopus 로고    scopus 로고
    • Riboswitch RNAs: Using RNA to sense cellular metabolism
    • Henkin, T.M. Riboswitch RNAs: Using RNA to sense cellular metabolism. Genes & Dev. 22, 3383-3390 (2008).
    • (2008) Genes & Dev , vol.22 , pp. 3383-3390
    • Henkin, T.M.1
  • 5
    • 0037206833 scopus 로고    scopus 로고
    • Thiamine derivates bind messenger RNAs directly to regulate bacterial gene expression
    • Winkler, W., Nahvi, A. & Breaker, R.R. Thiamine derivates bind messenger RNAs directly to regulate bacterial gene expression. Nature 419 952-956 (2002).
    • (2002) Nature , vol.419 , pp. 952-956
    • Winkler, W.1    Nahvi, A.2    Breaker, R.R.3
  • 6
    • 2342511433 scopus 로고    scopus 로고
    • New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control
    • Barrick, J.E. et al. New RNA motifs suggest an expanded scope for riboswitches in bacterial genetic control. Proc. Natl. Acd. Sci. USA 101, 6421-6426 (2004).
    • (2004) Proc. Natl. Acd. Sci. USA , vol.101 , pp. 6421-6426
    • Barrick, J.E.1
  • 7
    • 5044234799 scopus 로고    scopus 로고
    • A glycine-dependent riboswitch that uses cooperative binding to control gene expression
    • Mandal, M. et al. A glycine-dependent riboswitch that uses cooperative binding to control gene expression. Science 306, 275-279 (2004).
    • (2004) Science , vol.306 , pp. 275-279
    • Mandal, M.1
  • 8
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • Serganov, A., Polonskaia, A., Phan, A.T., Breaker, R.R. & Patel, D.J. Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. Nature 441, 1167-1171 (2006).
    • (2006) Nature , vol.441 , pp. 1167-1171
    • Serganov, A.1    Polonskaia, A.2    Phan, A.T.3    Breaker, R.R.4    Patel, D.J.5
  • 9
    • 0033559035 scopus 로고    scopus 로고
    • Storz, G. An RNA thermometer. Genes & Dev. 13, 633-636 (1999).
    • Storz, G. An RNA thermometer. Genes & Dev. 13, 633-636 (1999).
  • 11
    • 0001641104 scopus 로고    scopus 로고
    • Translational induction of heat shock transcription factor sigma32: Evidence for a built-in RNA thermosensor
    • Morita, M.T. et al. Translational induction of heat shock transcription factor sigma32: Evidence for a built-in RNA thermosensor. Genes Dev. 13, 655-665 (1999).
    • (1999) Genes Dev , vol.13 , pp. 655-665
    • Morita, M.T.1
  • 12
    • 0035584137 scopus 로고    scopus 로고
    • mRNA-based thermosensor controls expression of rhizobial heat shock genes
    • Nocker, A. et al. mRNA-based thermosensor controls expression of rhizobial heat shock genes. Nucleic Acids Res. 29, 4800-4807 (2001).
    • (2001) Nucleic Acids Res , vol.29 , pp. 4800-4807
    • Nocker, A.1
  • 13
    • 33745744196 scopus 로고    scopus 로고
    • Molecular basis for temperature sensing by an RNA thermometer
    • Chowdhury, S., Maris, C., Allain, F.H.-T. & Narberhaus, F. Molecular basis for temperature sensing by an RNA thermometer. EMBO J. 25 2487-2497 (2006).
    • (2006) EMBO J , vol.25 , pp. 2487-2497
    • Chowdhury, S.1    Maris, C.2    Allain, F.H.-T.3    Narberhaus, F.4
  • 14
    • 0346220279 scopus 로고    scopus 로고
    • Temperature-controlled structural alterations of an RNA thermometer
    • Chowdhury, S., Ragaz, C., Kreuger, E. & Narberhaus, F. Temperature-controlled structural alterations of an RNA thermometer. J. Biol. Chem. 278, 47915-47921 (2003).
    • (2003) J. Biol. Chem , vol.278 , pp. 47915-47921
    • Chowdhury, S.1    Ragaz, C.2    Kreuger, E.3    Narberhaus, F.4
  • 15
    • 35248843565 scopus 로고    scopus 로고
    • Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers
    • Waldminghaus, T., Gaubig, L.C. & Narberhaus, F. Genome-wide bioinformatic prediction and experimental evaluation of potential RNA thermometers. Mol. Genet. Genomics 278, 555-564 (2007).
    • (2007) Mol. Genet. Genomics , vol.278 , pp. 555-564
    • Waldminghaus, T.1    Gaubig, L.C.2    Narberhaus, F.3
  • 16
    • 0037031594 scopus 로고    scopus 로고
    • An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes
    • Johansson, J. et al. An RNA thermosensor controls expression of virulence genes in Listeria monocytogenes. Cell 110, 551-561 (2002).
    • (2002) Cell , vol.110 , pp. 551-561
    • Johansson, J.1
  • 17
    • 0022474408 scopus 로고
    • Translational regulatory signals within the coding region of the bacteriophage lambda cIII gene
    • Altuvia, S. & Oppenheim, A.B. Translational regulatory signals within the coding region of the bacteriophage lambda cIII gene. J. Bacteriol. 167, 415-419 (1986).
    • (1986) J. Bacteriol , vol.167 , pp. 415-419
    • Altuvia, S.1    Oppenheim, A.B.2
  • 18
    • 56049106809 scopus 로고    scopus 로고
    • Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli
    • Neupert, J., Karcher, D. & Bock, R. Design of simple synthetic RNA thermometers for temperature-controlled gene expression in Escherichia coli. Nucleic Acids Res. 36, e124 (2008).
    • (2008) Nucleic Acids Res , vol.36
    • Neupert, J.1    Karcher, D.2    Bock, R.3
  • 20
    • 0033061571 scopus 로고    scopus 로고
    • Initiation of translation in prokaryotes and eukaryotes
    • Kozak, M. Initiation of translation in prokaryotes and eukaryotes. Gene 234, 187-208 (1999).
    • (1999) Gene , vol.234 , pp. 187-208
    • Kozak, M.1
  • 21
    • 0028173550 scopus 로고
    • Prokaryotic translation initiation: The interactive pathway leading to initiation
    • McCarthy, J.E.G. & Brimacombe, R. Prokaryotic translation initiation: the interactive pathway leading to initiation. Trends Genet. 10 402-407 (1994).
    • (1994) Trends Genet , vol.10 , pp. 402-407
    • McCarthy, J.E.G.1    Brimacombe, R.2
  • 22
    • 27144555357 scopus 로고    scopus 로고
    • Regulation of translation via mRNA structure in prokaryotes and eukaryotes
    • Kozak, M. Regulation of translation via mRNA structure in prokaryotes and eukaryotes. Gene 361, 13-37 (2005).
    • (2005) Gene , vol.361 , pp. 13-37
    • Kozak, M.1
  • 23
    • 0345255620 scopus 로고    scopus 로고
    • A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs
    • Li, Y. & Altman, S. A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs. Proc. Natl. Acad. Sci. USA 100, 13213-13218 (2003).
    • (2003) Proc. Natl. Acad. Sci. USA , vol.100 , pp. 13213-13218
    • Li, Y.1    Altman, S.2
  • 24
    • 0028584414 scopus 로고
    • Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs
    • Chen, H., Bjerknes, M., Kumar, R. & Jay, E. Determination of the optimal aligned spacing between the Shine-Dalgarno sequence and the translation initiation codon of Escherichia coli mRNAs. Nucleic Acids Res. 22, 4953-4957 (1994).
    • (1994) Nucleic Acids Res , vol.22 , pp. 4953-4957
    • Chen, H.1    Bjerknes, M.2    Kumar, R.3    Jay, E.4
  • 25
    • 23444431611 scopus 로고
    • Green fluorescent protein as a marker for gene expression
    • Chalfie, M., Tu, Y., Euskirchen, G., Ward, W.W. & Prasher, D.C. Green fluorescent protein as a marker for gene expression. Science 263, 802-805 (1994).
    • (1994) Science , vol.263 , pp. 802-805
    • Chalfie, M.1    Tu, Y.2    Euskirchen, G.3    Ward, W.W.4    Prasher, D.C.5
  • 26
    • 55949120435 scopus 로고    scopus 로고
    • High-level expression of HIV antigens from the tobacco and tomato plastid genomes
    • Zhou, F. et al. High-level expression of HIV antigens from the tobacco and tomato plastid genomes. Plant Biotechnol. J. 6, 897-913 (2008).
    • (2008) Plant Biotechnol. J , vol.6 , pp. 897-913
    • Zhou, F.1
  • 27
    • 58849157867 scopus 로고    scopus 로고
    • Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic
    • Oey, M., Lohse, M., Kreikemeyer, B. & Bock, R. Exhaustion of the chloroplast protein synthesis capacity by massive expression of a highly stable protein antibiotic. Plant J. 57, 436-445 (2009).
    • (2009) Plant J , vol.57 , pp. 436-445
    • Oey, M.1    Lohse, M.2    Kreikemeyer, B.3    Bock, R.4
  • 28
    • 0042121256 scopus 로고    scopus 로고
    • Mfold web server for nucleic acid folding and hybridization prediction
    • Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
    • (2003) Nucleic Acids Res , vol.31 , pp. 3406-3415
    • Zuker, M.1
  • 29
    • 0020959710 scopus 로고
    • Studies on transformation of Escherichia coli with plasmids
    • Hanahan, D. Studies on transformation of Escherichia coli with plasmids. J. Mol. Biol. 166, 557-580 (1983).
    • (1983) J. Mol. Biol , vol.166 , pp. 557-580
    • Hanahan, D.1
  • 30
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim, H.C. & Doly, J. A rapid alkaline extraction procedure for screening recombinant plasmid DNA. Nucleic Acids Res. 7, 1513-1523 (1979).
    • (1979) Nucleic Acids Res , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 31
    • 0014949207 scopus 로고
    • Cleavage of structural proteins during the assembly of the head of bacteriophage T4
    • Laemmli, U.K. Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680-685 (1970).
    • (1970) Nature , vol.227 , pp. 680-685
    • Laemmli, U.K.1
  • 32
    • 0023472472 scopus 로고
    • Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa
    • Schägger, H. & von Jagow, G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166, 368-379 (1987).
    • (1987) Anal. Biochem , vol.166 , pp. 368-379
    • Schägger, H.1    von Jagow, G.2


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