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Volumn 80, Issue 2, 2009, Pages

Feedback topology and XOR-dynamics in Boolean networks with varying input structure

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL ESTIMATES; ANALYTICAL FORMULAS; BOOLEAN NETWORKS; DYNAMIC FEATURES; FEEDBACK STRUCTURE; FEEDBACK TOPOLOGY; GENERAL GRAPH; IN-DEGREE; KAUFFMAN NETWORKS; LEAF REMOVAL; RANDOM BOOLEAN NETWORKS; RECEIVING NODES; RELEVANT COMPONENTS; TRANSITION POINT; TREELIKE GRAPHS;

EID: 70249088682     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.80.026122     Document Type: Article
Times cited : (3)

References (47)
  • 1
    • 0742305866 scopus 로고    scopus 로고
    • Network biology: Understanding the cell's functional organization
    • DOI 10.1038/nrg1272
    • A. L. Barabasi and Z. N. Oltvai, Nat. Rev. Genet. 5, 101 (2004). 10.1038/nrg1272 (Pubitemid 38160277)
    • (2004) Nature Reviews Genetics , vol.5 , Issue.2 , pp. 101-113
    • Barabasi, A.-L.1    Oltvai, Z.N.2
  • 2
    • 0141484562 scopus 로고    scopus 로고
    • Biological networks: The tinkerer as an engineer
    • DOI 10.1126/science.1089072
    • U. Alon, Science 301, 1866 (2003). 10.1126/science.1089072 (Pubitemid 37221382)
    • (2003) Science , vol.301 , Issue.5641 , pp. 1866-1867
    • Alon, U.1
  • 4
    • 0141596113 scopus 로고    scopus 로고
    • Molecular networks: The top-down view
    • DOI 10.1126/science.1089118
    • D. Bray, Science 301, 1864 (2003). 10.1126/science.1089118 (Pubitemid 37221381)
    • (2003) Science , vol.301 , Issue.5641 , pp. 1864-1865
    • Bray, D.1
  • 5
    • 0037174638 scopus 로고    scopus 로고
    • Systems biology: Life's complexity pyramid
    • DOI 10.1126/science.1078563
    • Z. N. Oltvai and A. L. Barabasi, Science 298, 763 (2002). 10.1126/science.1078563 (Pubitemid 35231516)
    • (2002) Science , vol.298 , Issue.5594 , pp. 763-764
    • Oltvai, Z.N.1    Barabasi, A.-L.2
  • 8
    • 0015823097 scopus 로고
    • 10.1016/0022-5193(73)90247-6
    • R. Thomas, J. Theor. Biol. 42, 563 (1973). 10.1016/0022-5193(73)90247-6
    • (1973) J. Theor. Biol. , vol.42 , pp. 563
    • Thomas, R.1
  • 10
    • 0036578654 scopus 로고    scopus 로고
    • Topological and causal structure of the yeast transcriptional regulatory network
    • DOI 10.1038/ng873
    • N. Guelzim, S. Bottani, P. Bourgine, and F. Képès, Nat. Genet. 31, 60 (2002). 10.1038/ng873 (Pubitemid 34887639)
    • (2002) Nature Genetics , vol.31 , Issue.1 , pp. 60-63
    • Guelzim, N.1    Bottani, S.2    Bourgine, P.3    Kepes, F.4
  • 12
    • 0014489272 scopus 로고
    • 10.1016/0022-5193(69)90015-0
    • S. A. Kauffman, J. Theor. Biol. 22, 437 (1969). 10.1016/0022-5193(69) 90015-0
    • (1969) J. Theor. Biol. , vol.22 , pp. 437
    • Kauffman, S.A.1
  • 13
    • 33845617819 scopus 로고    scopus 로고
    • 9th International Conference on the Simulation and Synthesis of Living Systems (Artificial Life IX), edited by M. Bedau, P. Husbands, T. Hutton, S. Kumar, and H. Suzuki (MIT Press, Cambridge, MA
    • C. Gershenson, in Workshop and Tutorial Proceedings, 9th International Conference on the Simulation and Synthesis of Living Systems (Artificial Life IX), edited by, M. Bedau, P. Husbands, T. Hutton, S. Kumar and, H. Suzuki, (MIT Press, Cambridge, MA, 2004), pp. 160-173.
    • (2004) Workshop and Tutorial Proceedings , pp. 160-173
    • Gershenson, C.1
  • 16
    • 34447548696 scopus 로고    scopus 로고
    • Noisy attractors and ergodic sets in models of gene regulatory networks
    • DOI 10.1016/j.jtbi.2007.04.020, PII S0022519307002020
    • A. S. Ribeiro and S. A. Kauffman, J. Theor. Biol. 247, 743 (2007). 10.1016/j.jtbi.2007.04.020 (Pubitemid 47081056)
    • (2007) Journal of Theoretical Biology , vol.247 , Issue.4 , pp. 743-755
    • Ribeiro, A.S.1    Kauffman, S.A.2
  • 17
    • 0031558225 scopus 로고    scopus 로고
    • A numerical study of the critical line of Kauffman networks
    • DOI 10.1006/jtbi.1997.0423
    • U. Bastolla and G. Parisi, J. Theor. Biol. 187, 117 (1997). 10.1006/jtbi.1997.0423 (Pubitemid 27338672)
    • (1997) Journal of Theoretical Biology , vol.187 , Issue.1 , pp. 117-133
    • Bastolla, U.1    Parisi, G.2
  • 18
    • 33748846417 scopus 로고    scopus 로고
    • Transcriptional regulatory networks in bacteria: from input signals to output responses
    • DOI 10.1016/j.mib.2006.08.007, PII S1369527406001299, Antimicrobials/Genomics
    • A. S. N. Seshasayee, P. Bertone, G. M. Fraser, and N. M. Luscombe, Curr. Opin. Microbiol. 9, 511 (2006). 10.1016/j.mib.2006.08.007 (Pubitemid 44419503)
    • (2006) Current Opinion in Microbiology , vol.9 , Issue.5 , pp. 511-519
    • Seshasayee, A.S.1    Bertone, P.2    Fraser, G.M.3    Luscombe, N.M.4
  • 20
    • 34548419328 scopus 로고    scopus 로고
    • Interplay Between Network Structures, Regulatory Modes and Sensing Mechanisms of Transcription Factors in the Transcriptional Regulatory Network of E. coli
    • DOI 10.1016/j.jmb.2007.06.084, PII S0022283607008959
    • S. Balaji, M. Madan Babu, and L. Aravind, J. Mol. Biol. 372, 1108 (2007). 10.1016/j.jmb.2007.06.084 (Pubitemid 47368344)
    • (2007) Journal of Molecular Biology , vol.372 , Issue.4 , pp. 1108-1122
    • Balaji, S.1    Babu, M.M.2    Aravind, L.3
  • 22
    • 0037799461 scopus 로고    scopus 로고
    • 10.1103/PhysRevLett.90.098701
    • B. Samuelsson and C. Troein, Phys. Rev. Lett. 90, 098701 (2003). 10.1103/PhysRevLett.90.098701
    • (2003) Phys. Rev. Lett. , vol.90 , pp. 098701
    • Samuelsson, B.1    Troein, C.2
  • 28
    • 0005685497 scopus 로고    scopus 로고
    • Cambridge University Press, New York
    • V. F. Kolchin, Random Graphs (Cambridge University Press, New York, 1998).
    • (1998) Random Graphs
    • Kolchin, V.F.1
  • 33
    • 0000264002 scopus 로고
    • 10.1088/0305-4470/21/7/031
    • H. Flyvbjerg and M. Kjaer, J. Phys. A 21, 1695 (1988). 10.1088/0305-4470/21/7/031
    • (1988) J. Phys. A , vol.21 , pp. 1695
    • Flyvbjerg, H.1    Kjaer, M.2
  • 34
    • 41349121540 scopus 로고    scopus 로고
    • 10.1103/PhysRevE.65.016129
    • S. Bilke and F. Sjunnesson, Phys. Rev. E 65, 016129 (2001). 10.1103/PhysRevE.65.016129
    • (2001) Phys. Rev. e , vol.65 , pp. 016129
    • Bilke, S.1    Sjunnesson, F.2
  • 35
    • 44749093404 scopus 로고    scopus 로고
    • 10.1016/j.physleta.2008.05.041
    • M. Andrecut and S. A. Kauffman, Phys. Lett. A 372, 4757 (2008). 10.1016/j.physleta.2008.05.041
    • (2008) Phys. Lett. A , vol.372 , pp. 4757
    • Andrecut, M.1    Kauffman, S.A.2
  • 36
    • 0001327869 scopus 로고    scopus 로고
    • Core percolation in random graphs: A critical phenomena analysis
    • DOI 10.1007/s10051-001-8683-4
    • M. Bauer and O. Golinelli, Eur. Phys. J. B 24, 339 (2001). 10.1007/s10051-001-8683-4 (Pubitemid 33624612)
    • (2001) European Physical Journal B , vol.24 , Issue.3 , pp. 339-352
    • Bauer, M.1    Golinelli, O.2
  • 37
    • 0012229968 scopus 로고    scopus 로고
    • Dynamics of heuristic optimization algorithms on random graphs
    • DOI 10.1140/epjb/e2002-00240-8
    • M. Weigt, Eur. Phys. J. B 28, 369 (2002). 10.1140/epjb/e2002-00240-8 (Pubitemid 135695413)
    • (2002) European Physical Journal B , vol.28 , Issue.3 , pp. 369-381
    • Weigt, M.1
  • 38
    • 70249103636 scopus 로고    scopus 로고
    • Master thesis, Università degli studi di Milano
    • C. Maffi, Master thesis, Università degli studi di Milano, 2006.
    • (2006)
    • Maffi, C.1
  • 40
    • 33749597951 scopus 로고    scopus 로고
    • Relevant components in critical random Boolean networks
    • DOI 10.1088/1367-2630/8/10/228, PII S1367263006268915
    • V. Kaufman and B. Drossel, New J. Phys. 8, 228 (2006). 10.1088/1367-2630/8/10/228 (Pubitemid 44547586)
    • (2006) New Journal of Physics , vol.8 , pp. 228
    • Kaufman, V.1    Drossel, B.2
  • 42
    • 22244483129 scopus 로고    scopus 로고
    • 10.1016/S0167-2789(97)00243-1
    • U. Bastolla and G. Parisi, Physica D 115, 203 (1998). 10.1016/S0167-2789(97)00243-1
    • (1998) Physica D , vol.115 , pp. 203
    • Bastolla, U.1    Parisi, G.2
  • 43
    • 0000676885 scopus 로고    scopus 로고
    • 10.1016/S0167-2789(97)00242-X
    • U. Bastolla and G. Parisi, Physica D 115, 219 (1998). 10.1016/S0167-2789(97)00242-X
    • (1998) Physica D , vol.115 , pp. 219
    • Bastolla, U.1    Parisi, G.2
  • 46
    • 70249115851 scopus 로고    scopus 로고
    • This is the in connectivity, which remains constant as removal does not affect in distribution pn. The reverse will be true for LRd.
    • This is the in connectivity, which remains constant as removal does not affect in distribution pn. The reverse will be true for LRd.
  • 47
    • 70249119425 scopus 로고    scopus 로고
    • We call loop as the topological chains reserving the term cycle to the dynamics.
    • We call loop as the topological chains reserving the term cycle to the dynamics.


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