Process flow for classification and clustering of fruit fly gene expression patterns

Proceedings - International Conference on Image Processing, ICIP

Volumn , Issue , 2008, Pages 721-724

  Heffel, Andreas ^a,d   Stadler, Peter F ^a   Prohaska, Sonja J ^b,c   Kauer, Gerhard ^a   Kuska, Jens Peer ^d  

^a UNIVERSITY OF LEIPZIG   (Germany)

^b ARIZONA STATE UNIVERSITY   (United States)

^c ARIZONA STATE UNIVERSITY   (United States)

^d UNIVERSITY OF APPLIED SCIENCES EMDEN LEER   (Germany)

Author keywords

Image registration; Image segmentation; Pattern recognition

Indexed keywords

AUTOMATED PROCESS; CLASSIFICATION ,; CLASSIFICATION AND CLUSTERING; DROSOPHILA MELANOGASTER; FRUIT FLIES; GENE EXPRESSION PATTERNS; IN-SITU HYBRIDIZATION; LARGE-SCALE ANALYSIS; PROCESS FLOWS;

AUTOMATION; BIOACTIVITY; DIGITAL IMAGE STORAGE; FRUITS; GENE EXPRESSION; IMAGE REGISTRATION; IMAGING SYSTEMS; PATTERN RECOGNITION; PEST CONTROL;

IMAGE SEGMENTATION;

EID: 70049106817     PISSN: 15224880     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/ICIP.2008.4711856     Document Type: Conference Paper

References (17)

1. "Bdgp: Berkeley drosophila genome project," http://www.fruitfly.org/.
2. Pavel Tomancak, Amy Beaton, Richard Weiszmann, Elaine Kwan, ShengQiang Shu, Suzanna E. Lewis, Stephen Richards, Michael Ashburner, Volker Hartenstein, Susan E. Celniker, and Gerald M. Rubin, "Systematic determination of patterns of gene expression during drosophila embryogenesis," Genome Biology, vol. 3, no. 12, 2002.
3. Pavel Tomancak, Benjamin P. Berman, Amy Beaton, Richard Weiszmann, Elaine Kwan, Volker Hartenstein, Susan E. Celniker, and Gerald M. Rubin, "Global analysis of patterns of gene expression during drosophila embryogenesis," Genome Biology, vol. 8, no. 7, 2007.
4. Haiqiong Montalta-He and Heinrich Reichert, "Impressive expressions: developing a systematic database of gene-expression patterns in drosophila embryogenesis," Genome Biology, vol. 4, no. 2, pp. 205-205, 2003.
5. "Flybase: A database of drosophila genes and genomes," http://flybase.bio.indiana.edu/.
6. Sudhir Kumar, Karthik Jayaraman, Sethuraman Panchanathan, Rajalakshmi Gurunathan, Ana Marti-Subirana, and Stuart J. Newfeld, "Best: a novel computational approach for comparing gene expression patterns from early stages of drosophila melanogaster development," Genetics, vol. 162, no. 4, pp. 2037-2047, 2002.
7. Hanchuan Peng and Eugene W. Myers, "Comparing in situ mRNA expression patterns of drosophila embryos," in Proceedings of the eighth annual international conference on Resaerch in computational molecular biology, 2004, pp. 157-166.
8. Hanchuan Peng, Fuhui Long, Jie Zhou, Garmay Leung, Michael B Eisen, and Eugene W Myers, "Automatic image analysis for gene expression patterns of fly embryos," BMC Cell Biology, vol. 8 Suppl 1, 2007.
9. Franz Pernkopf and Djamel Bouchaffra, "Genetic-based EM algorithm for learning Gaussian mixture models," IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 27, no. 8, pp. 1344-1348, 2005.
10. Todd K. Moon, "The expectation-maximization algorithm," IEEE Signal Processing Magazine, pp. 47-60, 1996.
11. Chenyang Xu and J. L. Prince, "Snakes, shapes, and gradient vector flow," IEEE Transactions on Image Processing, vol. 7, no. 3, pp. 359-369, 1998.
12. Michael Kass, Andrew Witkin, and Demetri Terzopoulos, "Snakes: Active contour models," International Journal of Computer Vision, vol. 1, no. 4, pp. 321-331, November 2004.
13. Lisa Gottesfeld Brown, "A survey of image registration techniques," ACM Computing Surveys, vol. 24, no. 4, pp. 325-376, 1992.
14. Ulf-Dietrich Braumann and Jens-Peer Kuska, "Influence of the boundary conditions on the result of non-linear image registration," in Proceedings of the IEEE International Conference on Image Processing, Sept. 2005, pp. I-1129-I-1132.
15. Ulf-Dietrich Braumann and Jens-Peer Kuska, "A new equation for nonlinear image registration with control over the vortex structure in the displacement field," in Proceedings of the IEEE International Conference on Image Processing. Oct. 2006, pp. 329-332, IEEE Signal Processing Society.
16. Ulf-Dietrich Braumann, Jens Einenkel, Lars-Christian Horn, Jens-Peer Kuska, Markus Löffler, Nico Scherf, and Nicolas Wentzensen, "Registration of Histologic Colour Images of Different Staining," in Bildverarbeitung für die Medizin 2006 - Algorithmen, Systeme, Anwendungen, Heinz Handels, Jan Ehrhardt, Alexander Horsch, Hans-Peter Meinzer, and Thomas Tolxdorff, Eds. Mar. 2006, Informatik aktuell, pp. 231-235, Springer-Verlag.
17. Jens-Peer Kuska, Ulf-Dietrich Braumann, Nico Scherf, Markus Löffler, Jens Einenkel, Michael Höckel, Lars-Christian Horn, Nicolas Wentzensen, and Magnus von Knebel Doeberitz, "Image registration of differently stained histological sections," in Proceedings of the IEEE International Conference on Image Processing. Oct. 2006, pp. 333-336, IEEE Signal Processing Society.