Quantitative characterization of tissue microstructure with temporal diffusion spectroscopy

Journal of Magnetic Resonance

Volumn 200, Issue 2, 2009, Pages 189-197

  Xu, Junzhong ^a   Does, Mark D ^a,b   Gore, John C ^a,b,c  

^a VANDERBILT UNIVERSITY   (United States)

^b VANDERBILT UNIVERSITY   (United States)

^c VANDERBILT UNIVERSITY SCHOOL OF MEDICINE   (United States)

Author keywords

Diffusion time; Modeling; Oscillating gradient; Simulation; Temporal diffusion spectroscopy

Indexed keywords

DIFFUSION TIME; MODELING; OSCILLATING GRADIENT; SIMULATION; TEMPORAL DIFFUSION SPECTROSCOPY;

CELL MEMBRANES; COMPUTER SIMULATION; HISTOLOGY; MAGNETIC RESONANCE IMAGING; MICROSTRUCTURE;

DIFFUSION;

ALGORITHM; ANIMAL; ARTICLE; BIOLOGICAL MODEL; BODY WATER; CHEMISTRY; COMPUTER SIMULATION; CYTOLOGY; DIFFUSION; HUMAN; METHODOLOGY; MYELINATED NERVE; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; ULTRASTRUCTURE;

ALGORITHMS; ANIMALS; BODY WATER; COMPUTER SIMULATION; DIFFUSION; HUMANS; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, NEUROLOGICAL; NERVE FIBERS, MYELINATED;

EID: 69949143857     PISSN: 10907807     EISSN: 10960856     Source Type: Journal    
DOI: 10.1016/j.jmr.2009.06.022     Document Type: Article

References (47)

1. Hursh J.B. Conduction velocity and diameter of nerve fibers. Am. J. Physiol. 127 (1939) 131-139
2. Ritchie J.M. On the relation between fibre diameter and conduction velocity in myelinated nerve fibres. Proc. R. Soc. Lond. B Biol. Sci. 217 (1982) 29-35
3. Assaf Y., Blumenfeld-Katzir T., Yovel Y., and Basser P.J. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn. Reson. Med. 59 (2008) 1347-1354
4. Fang S.C., de los Reyes C., and Umen J.G. Cell size checkpoint control by the retinoblastoma tumor suppressor pathway. PLoS Genet. 2 (2006) e167
5. Arai Y., Okubo K., Terada N., Matsuta Y., Egawa S., Kuwao S., and Ogura K. Volume-weighted mean nuclear volume predicts tumor biology of clinically organ-confined prostate cancer. Prostate 46 (2001) 134-141
6. Hsu C.Y., Kurman R.J., Vang R., Wang T.L., Baak J., and Shih Ie M. Nuclear size distinguishes low- from high-grade ovarian serous carcinoma and predicts outcome. Hum. Pathol. 36 (2005) 1049-1054
7. Stejskal E.O. Use of spin echoes in a pulsed magnetic-field gradient to study anisotropic restricted diffusion and flow. J. Chem. Phys. 43 (1965) 3597-3603
8. Callaghan P.T. Principles of Nuclear Magnetic Resonance Microscopy (1991), Clarendon Press; Oxford University Press, Oxford [England]; New York
9. Cory D.G., and Garroway A.N. Measurement of translational displacement probabilities by NMR: an indicator of compartmentation. Magn. Reson. Med. 14 (1990) 435-444
10. Balinov B., Jonsson B., Linse P., and Soderman O. The NMR self-diffusion method applied to restricted diffusion - simulation of echo attenuation from molecules in spheres and between planes. J. Magn. Reson. A 104 (1993) 17-25
11. Brownstein K.R., and Tarr C.E. Importance of classical diffusion in NMR-studies of water in biological cells. Phys. Rev. A 19 (1979) 2446-2453
12. Tanner J.E., and Stejskal E.O. Restricted self-diffusion of protons in colloidal systems by pulsed-gradient spin-echo method. J. Chem. Phys. 49 (1968) 1768-1777
13. Neuman C.H. Spin-echo of spins diffusing in a bounded medium. J. Chem. Phys. 60 (1974) 4508-4511
14. Zhao L., Sukstanskii A.L., Kroenke C.D., Song J., Piwnica-Worms D., Ackerman J.J., and Neil J.J. Intracellular water specific MR of microbead-adherent cells: HeLa cell intracellular water diffusion. Magn. Reson. Med. 59 (2008) 79-84
15. Yablonskiy D.A., Bretthorst G.L., and Ackerman J.J. Statistical model for diffusion attenuated MR signal. Magn. Reson. Med. 50 (2003) 664-669
16. Xu J., Does M.D., and Gore J.C. Sensitivity of MR diffusion measurements to variations in intracellular structure: effects of nuclear size. Magn. Reson. Med. 61 (2009) 828-833
17. Schachter M., Does M.D., Anderson A.W., and Gore J.C. Measurements of restricted diffusion using an oscillating gradient spin-echo sequence. J. Magn. Reson. 147 (2000) 232-237
18. Does M.D., Parsons E.C., and Gore J.C. Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain. Magn. Reson. Med. 49 (2003) 206-215
19. Carl M., Wilson Miller G., Mugler III J.P., Rohrbaugh S., Tobias W.A., and Cates Jr. G.D. Measurement of hyperpolarized gas diffusion at very short time scales. J. Magn. Reson. 189 (2007) 228-240
20. Colvin D.C., Yankeelov T.E., Does M.D., Yue Z., Quarles C., and Gore J.C. New insights into tumor microstructure using temporal diffusion spectroscopy. Cancer Res. 68 (2008) 5941-5947
21. Callaghan P.T. A simple matrix formalism for spin echo analysis of restricted diffusion under generalized gradient waveforms. J. Magn. Reson. 129 (1997) 74-84
22. Parsons Jr. E.C., Does M.D., and Gore J.C. Temporal diffusion spectroscopy: theory and implementation in restricted systems using oscillating gradients. Magn. Reson. Med. 55 (2006) 75-84
23. Stepisnik J. Analysis of NMR self-diffusion measurements by a density-matrix calculation. Physica B 104 (1981) 350-364
24. Stepisnik J. Time-dependent self-diffusion by NMR spin-echo. Physica B 183 (1993) 343-350
25. Callaghan P.T., and Stepisnik J. Frequency-domain analysis of spin motion using modulated-gradient NMR. J. Magn. Reson. A 117 (1995) 118-122
26. Callaghan P.T. Pulsed-gradient spin-echo NMR for planar, cylindrical, and spherical pores under conditions of wall relaxation. J. Magn. Reson. A 113 (1995) 53-59
27. Does M.D., Parsons E.C., and Gore J.C. Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain. Magn. Reson. Med. 49 (2003) 206-215
28. Xu J., Does M.D., and Gore J.C. Numerical study of water diffusion in biological tissues using an improved finite difference method. Phys. Med. Biol. 52 (2007) N111-N126
29. Szafer A., Zhong J., and Gore J.C. Theoretical model for water diffusion in tissues. Magn. Reson. Med. 33 (1995) 697-712
30. Ford J.C., and Hackney D.B. Numerical model for calculation of apparent diffusion coefficients (ADC) in permeable cylinders - comparison with measured ADC in spinal cord white matter. Magn. Reson. Med. 37 (1997) 387-394
31. Hwang S.N., Chin C.L., Wehrli F.W., and Hackney D.B. An image-based finite difference model for simulating restricted diffusion. Magn. Reson. Med. 50 (2003) 373-382
32. Assaf Y., Freidlin R.Z., Rohde G.K., and Basser P.J. New modeling and experimental framework to characterize hindered and restricted water diffusion in brain white matter. Magn. Reson. Med. 52 (2004) 965-978
33. Assaf Y., Mayk A., and Cohen Y. Displacement imaging of spinal cord using q-space diffusion-weighted MRI. Magn. Reson. Med. 44 (2000) 713-722
34. Zielinski L.J., and Sen P.N. Effects of finite-width pulses in the pulsed-field gradient measurement of the diffusion coefficient in connected porous media. J. Magn. Reson. 165 (2003) 153-161
35. Pierpaoli C., and Basser P.J. Toward a quantitative assessment of diffusion anisotropy. Magn. Reson. Med. 36 (1996) 893-906
36. Zink D., Fischer A.H., and Nickerson J.A. Nuclear structure in cancer cells. Nat. Rev. Cancer 4 (2004) 677-687
37. Zhao L., Kroenke C.D., Song J., Piwnica-Worms D., Ackerman J.J., and Neil J.J. Intracellular water-specific MR of microbead-adherent cells: the HeLa cell intracellular water exchange lifetime. NMR Biomed. 21 (2008) 159-164
38. Talcott B., and Moore M.S. Getting across the nuclear pore complex. Trends Cell Biol. 9 (1999) 312-318
39. Maul G.G., and Deaven L. Quantitative determination of nuclear pore complexes in cycling cells with differing DNA content. J. Cell Biol. 73 (1977) 748-760
40. Ribbeck K., and Gorlich D. Kinetic analysis of translocation through nuclear pore complexes. EMBO J. 20 (2001) 1320-1330
41. Anderson A.W., Xie J., Pizzonia J., Bronen R.A., Spencer D.D., and Gore J.C. Effects of cell volume fraction changes on apparent diffusion in human cells. Magn. Reson. Imaging 18 (2000) 689-695
42. Grant S.C., Buckley D.L., Gibbs S., Webb A.G., and Blackband S.J. MR microscopy of multicomponent diffusion in single neurons. Magn. Reson. Med. 46 (2001) 1107-1112
43. Stepisnik J. A new view of the spin echo diffusive diffraction in porous structures. Europhys. Lett. 60 (2002) 453-459
44. Frohlich A.F., Jespersen S.N., Ostergaard L., and Kiselev V.G. The effect of impermeable boundaries of arbitrary geometry on the apparent diffusion coefficient. J. Magn. Reson. 194 (2008) 128-135
45. Frohlich A.F., Ostergaard L., and Kiselev V.G. Effect of impermeable boundaries on diffusion-attenuated MR signal. J. Magn. Reson. 179 (2006) 223-233
46. Sen P.N., and Basser P.J. A model for diffusion in white matter in the brain. Biophys. J. 89 (2005) 2927-2938
47. Robertson B. Spin-echo decay of spins diffusing in a bounded region. Phys. Rev. 151 (1966) 273