Alteration of chromophoric dissolved organic matter by solar UV radiation causes rapid changes in bacterial community composition

Photochemical and Photobiological Sciences

Volumn 8, Issue 9, 2009, Pages 1321-1328

  Piccini, Claudia ^a   Conde, Daniel ^b   Pernthaler, Jakob ^c   Sommaruga, Ruben ^d  

^a Institute for Biological Research Clemente Estable   (Uruguay)

^b UNIVERSITY OF URUGUAY   (Uruguay)

^c UNIVERSITY OF ZURICH   (Switzerland)

^d UNIVERSITY OF INNSBRUCK   (Austria)

Author keywords

[No Author keywords available]

Indexed keywords

DISSOLVED ORGANIC MATTER;

ABSORPTION; ALPHAPROTEOBACTERIA; ANIMAL CELL; ARTICLE; ATLANTIC OCEAN; BACTERIAL GROWTH; BACTERIOLYSIS; BACTERIOPLANKTON; BACTERIUM CULTURE; BETAPROTEOBACTERIA; BIOAVAILABILITY; BLEACHING; CELL ACTIVITY; CELL STIMULATION; CHROMATOPHORE; CONCENTRATION (PARAMETERS); CONTROLLED STUDY; DARKNESS; DILUTION; FLUORESCENCE IN SITU HYBRIDIZATION; INCUBATION TIME; LAGOON; MICROBIAL ACTIVITY; MICROBIAL COMMUNITY; NONHUMAN; PHOTOCHEMISTRY; PRIORITY JOURNAL; RADIATION EXPOSURE; SEASHORE; SOLAR RADIATION; SUMMER; ULTRAVIOLET A RADIATION; ULTRAVIOLET RADIATION;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA;

BACTERIA; COLONY COUNT, MICROBIAL; FRESH WATER; HYDROCARBONS; PHOTOCHEMICAL PROCESSES; SOLAR ENERGY; ULTRAVIOLET RAYS;

EID: 69949084356     PISSN: 1474905X     EISSN: 14749092     Source Type: Journal    
DOI: 10.1039/b905040j     Document Type: Article

References (52)

1. C. L. Osburn and D. P. Morris, in Photochemistry of chromophoric dissolved organic matter in natural waters, in UV effects in aquatic organisms and ecosystems, ed., E. W. Helbling, and, H. Zagarese, The Royal Society of Chemistry, Cambridge, 2003, pp. 185-217
2. K. L. Bushaw R. G. Zepp M. A. Tarr D. Schulz-Janders R. A. Bourbonniere R. E. Hodson W. L. Miller D. A. Bronk M. A. Moran Photochemical release of biologically available nitrogen from aquatic dissolved organic matter Nature 1996 381 404 407
3. W. L. Miller M. A. Moran Interaction of photochemical and microbial processes in the degradation of refractory dissolved organic matter from a coastal marine environment Limnol. Oceanogr. 1997 42 1317 1324
4. M. A. Moran R. G. Zepp Role of photoreactions in the formation of biologically labile compounds from dissolved organic matter Limnol. Oceanogr. 1997 42 1307 1316
5. B. A. Biddanda J. B. Cotner Enhancement of dissolved organic matter bioavailability by sunlight and its role in the carbon cycle of Lakes Superior and Michigan J. Great Lakes Res. 2003 29 228 241
6. R. G. Zepp T. V. Callaghan D. J. Erickson Interactive effects of ozone depletion and climate change on biogeochemical cycles Photochem. Photobiol. Sci. 2003 2 51 61
7. R. J. Kieber X. Zhou K. Mopper Formation of carbonyl compounds from UV-induced photodegradation of humic substances in natural waters: Fate of riverine carbon to the sea Limnol. Oceanogr. 1990 35 1503 1515
8. K. Mopper and D. J. Kieber, Marine photochemistry and its impact on carbon cycling, in The effects of UV radiation in the marine environment, ed., S. Mora, S. Demers, and, M. Vernet, Cambridge University Press, Cambridge, 2000, pp. 101-129
9. M. J. Lindell W. Granéli L. J. Tranvik Enhanced bacterial growth in response to photochemical transformation of dissolved organic matter Limnol. Oceanogr. 1995 40 195 199
10. R. G. Wetzel P. G. Hatcher T. S. Bianchi Natural photolysis by ultraviolet irradiance of recalcitrant dissolved organic matter to simple substrates for rapid bacterial metabolism Limnol. Oceanogr. 1995 40 1369 1380
11. M. J. Lindell W. Granéli L. J. Tranvik Impact of solar (UV)-radiation on bacterial growth in lakes Aquat. Microb. Ecol. 1996 11 135 141
12. N. O. G. Jørgensen L. Tranvik H. Edling W. Granéli M. Lindell Effects of sunlight on occurrence and bacterial turnover of specific carbon and nitrogen compounds in lake water FEMS Microb. Ecol. 1998 25 217 227
13. S. Bertilsson L. J. Tranvik Photochemically produced carboxylic acids as substrates for freshwater bacterioplankton Limnol. Oceanogr. 1998 43 885 895
14. M. Pérez R. Sommaruga Interactive effects of solar radiation and dissolved organic matter on bacterial activity and community structure Environ. Microbiol. 2007 9 2200 2210
15. D. Conde L. Aubriot S. Bonilla R. Sommaruga Marine intrusions in a coastal lagoon enhance the negative effect of solar UV radiation on phytoplankton photosynthetic rates Mar. Ecol. Prog. Ser. 2002 240 57 70
16. C. A. Stedmon S. Markager H. Kaasb Optical properties and signatures of chromophoric dissolved organic matter (CDOM) in Danish coastal waters Estuar. Coast. Shelf Sci. 2000 51 267 278
17. P. Kuhn H. Brownman B. McArthur J. F. St-Pierre Penetration of ultraviolet radiation in the waters of the estuary and Gulf of St. Lawrence Limnol. Oceanogr. 1999 44 710 716
18. D. Conde L. Aubriot R. Sommaruga Changes in UV penetration associated with marine intrusions and freshwater discharge in a shallow coastal lagoon of the Southern Atlantic Ocean Mar. Ecol. Prog. Ser. 2000 207 19 31
19. I. Obernosterer R. Sempéré G. J. Herndl Ultraviolet radiation induces reversal of the bioavailability of DOM to marine bacterioplankton Aquat. Microb. Ecol. 2001 24 61 68
20. M. A. Moran and J. S. Covert, Photochemically mediated linkages between dissolved organic matter and bacterioplankton, in Aquatic Ecosystems: Interactivity of Dissolved Organic Matter, ed., S. Findlay, and, R. Sinsabaugh, Academics Aquatic Ecology Series, 2003, pp. 244-262
21. M. Abboudi W. H. Jeffrey J. F. Ghiglione M. Pujo-Pay L. Oriol R. Sempéré B. Charriere F. Joux Effects of photochemical transformations of dissolved organic matter on bacterial metabolism and diversity in three contrasting coastal sites in the Northwestern Mediterranean Sea during summer Microb. Ecol. 2008 55 344 357
22. B. M. Fuchs M. V. Zubkov K. Sahm P. H. Burkill R. Amann Changes in community composition during dilution cultures of marine bacterioplankton as assessed by flow cytometric and molecular biological techniques Environ. Microbiol. 2000 2 191 201
23. C. Piccini D. Conde C. Alonso R. Sommaruga J. Pernthaler Blooms of single bacterial species in a coastal lagoon of the southwestern Atlantic Ocean Appl. Environ. Microbiol. 2006 72 6560 6568
24. K. G. Porter Y. S. Feig The use of DAPI for identifying and counting aquatic microflora Limnol. Oceanogr. 1980 25 943 948
25. D. L. Kirchman and H. W. Ducklow, Estimating conversion factors for the thymidine and leucine methods for measuring bacterial production, in Handbook of methods in aquatic microbial ecology, ed., P. F. Kemp, B. F. Sherr, E. B. Sherr, and, J. Cole, Lewis Publishers, Boca Raton, Florida, 1993, pp. 513-517
26. A. Pernthaler J. Pernthaler R. Amann Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria Appl. Environ. Microbiol. 2002 68 3094 3101
27. E. Teira T. Reinthaler A. Pernthaler J. Pernthaler G. J. Herndl Combining catalyzed reporter deposition-fluorescence in situ hybridization and microautoradiography to detect substrate utilization by Bacteria and Archaea in the deep ocean Appl. Environ. Microbiol. 2004 70 4411 4414
28. A. Neef, Anwendung der in situ Einzelzell-Identifizierung von Bakterien zur Populationsanalyse in komplexen mikrobiellen Biozönosen, PhD thesis. Technische Universität München, 1997
29. W. Manz R. Amann W. Ludwig M. Wagner K. H. Schleifer Phylogenetic oligodeoxynucleotide probes for the major subclasses of Proteobacteria: Problems and solutions Syst. Appl. Microbiol. 1992 15 593 600
30. W. Manz R. Amann W. Ludwig M. Vancanneyt K. H. Schleifer Application of a suite of 16S rRNA-specific oligonucleotide probes designed to investigate bacteria of the phylum cytophaga-flavobacter-bacteroides in the natural environment Microbiology 1996 142 1097 1106
31. C. Roller M. Wagner R. Amann W. Ludwig K. H. Schleifer Probing of Gram-positive bacteria with high DNA G + C content using 23S rRNA-targeted oligonucleotides Microbiology 1994 140 2849 2858
32. H. Daims A. Bruhl R. Amann K. H. Schleifer M. Wagner The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: Development and evaluation of a more comprehensive probe set Syst. Appl. Microbiol. 1999 22 434 444
33. J. Pernthaler A. Pernthaler R. Amann Automated enumeration of groups of marine picoplankton after fluorescence in situ hybridization Appl. Environ. Microbiol. 2003 69 2631 2637
34. D. J. Kieber J. McDaniel K. Mopper Photochemical source of biological substrates in seawater: implications for carbon cycling Nature 1989 341 637 639
35. I. Reche M. L. Pace J. Cole Modeled effects of dissolved organic carbon and solar spectra on photobleaching in lake ecosystems Ecosystems 2000 3 419 432
36. D. L. Kirchman H. W. Ducklow R. Mitchell Estimates of bacterial growth from changes in uptake rates and biomass Appl. Environ. Microbiol. 1982 44 1296 1307
37. J. W. Ammermann J. A. Fuhrman A. Hagström F. Azam Bacterioplankton growth in seawater: I. Growth, kinetics and cellular characteristics in seawater cultures Mar. Ecol. Prog. Ser. 1984 18 31 39
38. S. L. McCallister J. E. Bauer J. Kelly H. W. Ducklow Effects of sunlight on decomposition of estuarine dissolved organic C, N and P and bacterial metabolism Aquat. Microb. Ecol. 2005 40 25 35
39. A. Pernthaler J. Pernthaler H. Eilers R. Amann Growth patterns of two marine isolates: adaptations to substrate patchiness? Appl. Environ. Microbiol. 2001 67 4077 4083
40. F. Schut R. A. Prins J. C. Gottschal Oligotrophy and pelagic marine bacteria: facts and fiction Aquat. Microb. Ecol. 1997 12 177 202
41. J. Pinhassi A. Hagström Seasonal succession in marine bacterioplankton Aquat. Microb. Ecol. 2000 21 245 256
42. M. Simon F. Azam Protein content and protein synthesis rates of planktonic marine bacteria Mar. Ecol. Prog. Ser. 1989 51 201 213
43. K. Flõrdh P. S. Cohen S. Kjelleberg Ribosomes exist in large excess over the apparent demand for protein synthesis during carbon starvation in marine Vibrio sp. strain CCUG 15956 J. Bacteriol. 1992 174 6780 6788
44. J. M. Gasol X. A. G. Morán Effects of filtration on bacterial activity and picoplankton community structure as assessed by flow cytometry Aquat. Microb. Ecol. 1999 16 251 264
45. E. B. Sherr B. F. Sherr C. T. Sigmon Activity of marine bacteria under incubated and in situ conditions Aquat. Microb. Ecol. 1999 20 213 223
46. M. T. Suzuki Effect of protistan bacterivory on coastal bacterioplankton diversity Aquat. Microb. Ecol. 1999 20 261 272
47. H. Schõfer P. Servais G. Muyzer Successional changes in the genetic diversity of a marine assemblage during confinement Arch. Mikrobiol. 2000 173 138 145
48. H. Schäfer L. Bernard C. Courties P. Lebaron P. Servais R. Pukall E. Stackebrandt M. Troussellier T. Guindulain J. Vives-Rego G. Muyzer Microbial community dynamics in Mediterranean nutrient-enriched seawater mesocosms: changes in the genetic diversity of bacterial populations FEMS Microbiol. Ecol. 2001 34 243 253
49. H. Eilers J. Pernthaler F. O. Glöckner R. Amann Culturability and in situ abundance of pelagic bacteria from the North Sea Appl. Environ. Microbiol. 2000 66 3044 3051
50. R. Massana C. Pedrós-Alió E. O. Casamayor J. M. Gasol Changes in marine bacterioplankton phylogenetic composition during incubations designed to measure biogeochemically significant parameters Limnol. Oceanogr. 2001 46 1181 1188
51. L. Giuliano E. De Domenico M. G. Höfle M. M. Yakimov Identification of culturable oligotrophic bacteria within naturally occurring bacterioplankton communities of the Ligurian Sea by 16S rRNA sequencing and probing Microb. Ecol. 1999 37 77 85
52. U. Burkert F. Warnecke D. Babenzien E. Zwirnmann J. Pernthaler Members of a readily enriched β-Proteobacterial clade are common in the surface waters of a humic lake Appl. Environ. Microbiol. 2003 69 6550 6559