메뉴 건너뛰기




Volumn 37, Issue 15, 2009, Pages

Conditional gene silencing of multiple genes with antisense RNAs and generation of a mutator strain of Escherichia coli

Author keywords

[No Author keywords available]

Indexed keywords

ACETATE KINASE; BETA GALACTOSIDASE; COMPLEMENTARY RNA; DOUBLE STRANDED RNA; MESSENGER RNA; MICROSOMAL AMINOPEPTIDASE; MUTANT PROTEIN; NUCLEOSIDE DIPHOSPHATE KINASE; PHOSPHATE ACETYLTRANSFERASE; PROTEIN MUTD; PROTEIN MUTS; UNCLASSIFIED DRUG;

EID: 69849092387     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp498     Document Type: Article
Times cited : (82)

References (45)
  • 1
    • 0036575444 scopus 로고    scopus 로고
    • Antisense RNAs everywhere?
    • Wagner,E.G.H. and Flärdh,K. (2002) Antisense RNAs everywhere? Trends Genet., 18, 223-226.
    • (2002) Trends Genet , vol.18 , pp. 223-226
    • Wagner, E.G.H.1    Flärdh, K.2
  • 2
    • 0030956463 scopus 로고    scopus 로고
    • Efficient hammer-head ribozyme and antisense RNA targeting in a slow ribosome Escherichia coli mutant
    • Chen,H., Ferbeyre,G. and Cedergren,R. (1997) Efficient hammer-head ribozyme and antisense RNA targeting in a slow ribosome Escherichia coli mutant. Nat. Biotechnol., 15, 432-435.
    • (1997) Nat. Biotechnol , vol.15 , pp. 432-435
    • Chen, H.1    Ferbeyre, G.2    Cedergren, R.3
  • 3
    • 1542333740 scopus 로고    scopus 로고
    • The translation start codon region is sensitive to antisense PNA inhibition in Escherichia coli
    • Dryselius,R., Aswasti,S.K., Rajarao,G.K., Nielsen,P.E. and Good,L. (2003) The translation start codon region is sensitive to antisense PNA inhibition in Escherichia coli. Oligonucleotides, 13, 427-433.
    • (2003) Oligonucleotides , vol.13 , pp. 427-433
    • Dryselius, R.1    Aswasti, S.K.2    Rajarao, G.K.3    Nielsen, P.E.4    Good, L.5
  • 4
    • 33845667323 scopus 로고    scopus 로고
    • Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli
    • Nakashima,N., Tamura,T. and Good,L. (2006) Paired termini stabilize antisense RNAs and enhance conditional gene silencing in Escherichia coli. Nucleic Acids Res., 34, e138.
    • (2006) Nucleic Acids Res , vol.34
    • Nakashima, N.1    Tamura, T.2    Good, L.3
  • 5
    • 0035929121 scopus 로고    scopus 로고
    • Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA
    • Ji,Y.D., Zhang,B., van Horn,S.F., Warren,P., Woodnutt,G., Burnham,M.K.R. and Rosenberg,M. (2001) Identification of critical staphylococcal genes using conditional phenotypes generated by antisense RNA. Science, 293, 2266-2269.
    • (2001) Science , vol.293 , pp. 2266-2269
    • Ji, Y.D.1    Zhang, B.2    van Horn, S.F.3    Warren, P.4    Woodnutt, G.5    Burnham, M.K.R.6    Rosenberg, M.7
  • 6
    • 0037337740 scopus 로고    scopus 로고
    • Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum
    • Tummala,S.B., Welker,N.E. and Papoutsakis,E.T. (2003) Design of antisense RNA constructs for downregulation of the acetone formation pathway of Clostridium acetobutylicum. J. Bacteriol., 185, 1923-1934.
    • (2003) J. Bacteriol , vol.185 , pp. 1923-1934
    • Tummala, S.B.1    Welker, N.E.2    Papoutsakis, E.T.3
  • 8
    • 34247540355 scopus 로고    scopus 로고
    • Antisense-RNA-mediated decreased synthesis of small, acid-soluble spore proteins leads to decreased resistance of Clostridium perfringens spores to moist heat and UV radiation
    • Raju,D., Setlow,P. and Sarker,M.R. (2007) Antisense-RNA-mediated decreased synthesis of small, acid-soluble spore proteins leads to decreased resistance of Clostridium perfringens spores to moist heat and UV radiation. Appl. Environ. Microbiol., 73, 2048-2053.
    • (2007) Appl. Environ. Microbiol , vol.73 , pp. 2048-2053
    • Raju, D.1    Setlow, P.2    Sarker, M.R.3
  • 9
    • 0032986060 scopus 로고    scopus 로고
    • Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum
    • Desai,R.P. and Papoutsakis,E.T. (1999) Antisense RNA strategies for metabolic engineering of Clostridium acetobutylicum. Appl. Environ. Microbiol., 65, 936-945.
    • (1999) Appl. Environ. Microbiol , vol.65 , pp. 936-945
    • Desai, R.P.1    Papoutsakis, E.T.2
  • 10
    • 0042431780 scopus 로고    scopus 로고
    • Down-regulation of acetate pathway through antisense strategy in Escherichia coli: Improved foreign protein production
    • Kim,J.Y.H. and Cha,H.J. (2003) Down-regulation of acetate pathway through antisense strategy in Escherichia coli: Improved foreign protein production. Biotechnol. Bioeng., 83, 841-853.
    • (2003) Biotechnol. Bioeng , vol.83 , pp. 841-853
    • Kim, J.Y.H.1    Cha, H.J.2
  • 11
    • 4644233997 scopus 로고    scopus 로고
    • Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression
    • Nakashima,N. and Tamura,T. (2004) Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression. Appl. Environ. Microbiol., 70, 5557-5568.
    • (2004) Appl. Environ. Microbiol , vol.70 , pp. 5557-5568
    • Nakashima, N.1    Tamura, T.2
  • 12
    • 12844258276 scopus 로고    scopus 로고
    • Isolation of chromosomal mutations that affect carotenoid production in Escherichia coli: Mutations alter copy number of ColE1-type plasmids
    • Tao,L., Jackson,R.E., Rouvière,P.E. and Cheng,Q. (2005) Isolation of chromosomal mutations that affect carotenoid production in Escherichia coli: Mutations alter copy number of ColE1-type plasmids. FEMS Microbiol. Lett., 243, 227-233.
    • (2005) FEMS Microbiol. Lett , vol.243 , pp. 227-233
    • Tao, L.1    Jackson, R.E.2    Rouvière, P.E.3    Cheng, Q.4
  • 13
    • 0019888537 scopus 로고
    • Evidence for two functional gal promoters in intact Escherichia coli cells
    • Aiba,H., Adhya,S. and de Crombrugghe,B. (1981) Evidence for two functional gal promoters in intact Escherichia coli cells. J. Biol. Chem., 256, 1905-1910.
    • (1981) J. Biol. Chem , vol.256 , pp. 1905-1910
    • Aiba, H.1    Adhya, S.2    de Crombrugghe, B.3
  • 14
    • 33646759934 scopus 로고    scopus 로고
    • Expression analysis of stress-specific responsive genes in two-stage continuous cultures of Escherichia coli using cDNA microarray and real-time RT-PCR analysis
    • Kim,B.C. and Gu,M.B. (2006) Expression analysis of stress-specific responsive genes in two-stage continuous cultures of Escherichia coli using cDNA microarray and real-time RT-PCR analysis. Enzyme Microb. Technol., 39, 440-446.
    • (2006) Enzyme Microb. Technol , vol.39 , pp. 440-446
    • Kim, B.C.1    Gu, M.B.2
  • 15
    • 0001641514 scopus 로고
    • Mutaions of bacteria from virus sensitivity to virus resistance
    • Luria,S.E. and Delbrück,M. (1943) Mutaions of bacteria from virus sensitivity to virus resistance. Genetics, 28, 491-511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.E.1    Delbrück, M.2
  • 16
    • 41549090370 scopus 로고    scopus 로고
    • New pSC101-derivative cloning vectors with elevated copy numbers
    • Peterson,J. and Phillips,G.J. (2008) New pSC101-derivative cloning vectors with elevated copy numbers. Plasmid, 59, 193-201.
    • (2008) Plasmid , vol.59 , pp. 193-201
    • Peterson, J.1    Phillips, G.J.2
  • 17
    • 34247557976 scopus 로고    scopus 로고
    • Tightly regulated, high-level expression from controlled copy number vectors based on the replicon of temperate phage N15
    • Mardanov,A.V., Strakhova,T.S., Smagin,V.A. and Ravin,N.V. (2007) Tightly regulated, high-level expression from controlled copy number vectors based on the replicon of temperate phage N15. Gene, 395, 15-21.
    • (2007) Gene , vol.395 , pp. 15-21
    • Mardanov, A.V.1    Strakhova, T.S.2    Smagin, V.A.3    Ravin, N.V.4
  • 18
    • 0021298879 scopus 로고
    • Analysis of copy number control elements in the region of the vegetative replication origin of the broad host range plasmid RK2
    • Thomas,C.M., Cross,M.A., Hussain,A.A.K. and Smith,C.A. (1984) Analysis of copy number control elements in the region of the vegetative replication origin of the broad host range plasmid RK2. EMBO J., 3, 57-63.
    • (1984) EMBO J , vol.3 , pp. 57-63
    • Thomas, C.M.1    Cross, M.A.2    Hussain, A.A.K.3    Smith, C.A.4
  • 19
    • 0346882657 scopus 로고    scopus 로고
    • PepN is the major aminopeptidase in Escherichia coli: Insights on substrate specificity and role during sodium-salicylate-induced stress
    • Chandu,D. and Nandi,D. (2003) PepN is the major aminopeptidase in Escherichia coli: Insights on substrate specificity and role during sodium-salicylate-induced stress. Microbiology, 149, 3437-3447.
    • (2003) Microbiology , vol.149 , pp. 3437-3447
    • Chandu, D.1    Nandi, D.2
  • 20
    • 3242735062 scopus 로고    scopus 로고
    • Tightly regulated vectors for the cloning and expression of toxic genes
    • Anthony,L.C., Suzuki,H. and Filutowicz,M. (2004) Tightly regulated vectors for the cloning and expression of toxic genes. J. Microbiol. Methods, 58, 243-250.
    • (2004) J. Microbiol. Methods , vol.58 , pp. 243-250
    • Anthony, L.C.1    Suzuki, H.2    Filutowicz, M.3
  • 21
    • 23344450789 scopus 로고    scopus 로고
    • Characterization of the acetate-producing pathways in Escherichia coli
    • Dittrich,C.R., Bennett,G.N. and San,K.Y. (2005) Characterization of the acetate-producing pathways in Escherichia coli. Biotechnol. Prog., 21, 1062-1067.
    • (2005) Biotechnol. Prog , vol.21 , pp. 1062-1067
    • Dittrich, C.R.1    Bennett, G.N.2    San, K.Y.3
  • 22
    • 0025236475 scopus 로고
    • Improved expression of human interleukin-2 in high-cell-density fermentor cultures of Escherichia coli
    • Bauer,K.A., Ben-Bassat,A., Dawson,M., De La Puente,V.T. and Neway,J.O. (1990) Improved expression of human interleukin-2 in high-cell-density fermentor cultures of Escherichia coli. App. Environ. Microbiol., 56, 1296-1302.
    • (1990) App. Environ. Microbiol , vol.56 , pp. 1296-1302
    • Bauer, K.A.1    Ben-Bassat, A.2    Dawson, M.3    De La Puente, V.T.4    Neway, J.O.5
  • 23
    • 1442306213 scopus 로고    scopus 로고
    • Engineering Escherichia coli for efficient conversion of glucose to pyruvate
    • Causey,T.B., Shanmugam,K.T., Yomano,L.P. and Ingram,L.O. (2004) Engineering Escherichia coli for efficient conversion of glucose to pyruvate. Proc. Natl Acad. Sci. USA, 101, 2235-2240.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2235-2240
    • Causey, T.B.1    Shanmugam, K.T.2    Yomano, L.P.3    Ingram, L.O.4
  • 24
    • 14844347657 scopus 로고    scopus 로고
    • Separation of mutation avoidance and antirecombination functions in an Escherichia coli mutS mutant
    • Calmann,M.A., Nowosielska,A. and Marinus,M.G. (2005) Separation of mutation avoidance and antirecombination functions in an Escherichia coli mutS mutant. Nucleic Acids Res., 33, 1193-1200.
    • (2005) Nucleic Acids Res , vol.33 , pp. 1193-1200
    • Calmann, M.A.1    Nowosielska, A.2    Marinus, M.G.3
  • 25
    • 21344461670 scopus 로고    scopus 로고
    • MutS inhibits RecA-mediated strand transfer with methylated DNA substrates
    • Calmann,M.A., Evans,J.E. and Marinus,M.G. (2005) MutS inhibits RecA-mediated strand transfer with methylated DNA substrates. Nucleic Acids Res., 33, 3591-3597.
    • (2005) Nucleic Acids Res , vol.33 , pp. 3591-3597
    • Calmann, M.A.1    Evans, J.E.2    Marinus, M.G.3
  • 26
    • 33845614522 scopus 로고    scopus 로고
    • The involvement of replication in single stranded oligonucleotide-mediated gene repair
    • Huen,M.S.Y., Li,X.T., Lu,L.Y., Watt,R.M., Liu,D.P. and Huang,J.D. (2006) The involvement of replication in single stranded oligonucleotide-mediated gene repair. Nucleic Acids Res., 34 6183-6194.
    • (2006) Nucleic Acids Res , vol.34 , pp. 6183-6194
    • Huen, M.S.Y.1    Li, X.T.2    Lu, L.Y.3    Watt, R.M.4    Liu, D.P.5    Huang, J.D.6
  • 27
    • 0037494980 scopus 로고    scopus 로고
    • Silencing of the gene coding for the ε subunit of DNA polymerase III slows down the growth rate of Escherichia coli populations
    • Stefan,A., Reggiani,L., Cianchetta,S., Radeghieri,A., Rodriguez,A. and Hochkoeppler,A. (2003) Silencing of the gene coding for the ε subunit of DNA polymerase III slows down the growth rate of Escherichia coli populations. FEBS Lett., 546, 295-299.
    • (2003) FEBS Lett , vol.546 , pp. 295-299
    • Stefan, A.1    Reggiani, L.2    Cianchetta, S.3    Radeghieri, A.4    Rodriguez, A.5    Hochkoeppler, A.6
  • 28
    • 34247122824 scopus 로고    scopus 로고
    • Efficient silencing of the gene coding for the e subunit of DNA polymerase III in Escherichia coli is triggered by antisense RNAs featuring stability in vivo
    • Stefan,A., Tabler,M. and Hochkoeppler,A. (2007) Efficient silencing of the gene coding for the e subunit of DNA polymerase III in Escherichia coli is triggered by antisense RNAs featuring stability in vivo. FEMS Microbiol. Lett., 270, 277-283.
    • (2007) FEMS Microbiol. Lett , vol.270 , pp. 277-283
    • Stefan, A.1    Tabler, M.2    Hochkoeppler, A.3
  • 29
    • 0036742429 scopus 로고    scopus 로고
    • Escherichia coli strains (ndk) lacking nudeoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair-deficient strains
    • Miller,J.H., Funchain,P., Clendenin,W., Huang,T., Nguyen,A., Wolff,E., Yeung,A., Chiang,J.H., Garibyan,L., Slupska,M.M. et al. (2002) Escherichia coli strains (ndk) lacking nudeoside diphosphate kinase are powerful mutators for base substitutions and frameshifts in mismatch-repair-deficient strains. Genetics, 162, 5-13.
    • (2002) Genetics , vol.162 , pp. 5-13
    • Miller, J.H.1    Funchain, P.2    Clendenin, W.3    Huang, T.4    Nguyen, A.5    Wolff, E.6    Yeung, A.7    Chiang, J.H.8    Garibyan, L.9    Slupska, M.M.10
  • 32
    • 0025873742 scopus 로고
    • Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon
    • Blomfield,I.C., Vaughn,V., Rest,R.F. and Eisenstein,B.I. (1991) Allelic exchange in Escherichia coli using the Bacillus subtilis sacB gene and a temperature-sensitive pSC101 replicon. Mol. Microbiol. 5, 1447-1457.
    • (1991) Mol. Microbiol , vol.5 , pp. 1447-1457
    • Blomfield, I.C.1    Vaughn, V.2    Rest, R.F.3    Eisenstein, B.I.4
  • 33
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko,K.A. and Wanner,B.L. (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc. Natl Acad. Sci. USA, 97, 6640-6645.
    • (2000) Proc. Natl Acad. Sci. USA , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 34
    • 33750986817 scopus 로고    scopus 로고
    • Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation
    • Shao,Y., Wu,Y., Chan,C.Y., McDonough,K. and Ding,Y. (2006) Rational design and rapid screening of antisense oligonucleotides for prokaryotic gene modulation. Nucleic Acids Res., 34, 5660-5669.
    • (2006) Nucleic Acids Res , vol.34 , pp. 5660-5669
    • Shao, Y.1    Wu, Y.2    Chan, C.Y.3    McDonough, K.4    Ding, Y.5
  • 35
    • 34247158257 scopus 로고    scopus 로고
    • Mechanism of RNA silencing by Hfq-binding small RNAs
    • Aiba,H. (2007) Mechanism of RNA silencing by Hfq-binding small RNAs. Curr. Opin. Microbiol., 10, 134-139.
    • (2007) Curr. Opin. Microbiol , vol.10 , pp. 134-139
    • Aiba, H.1
  • 36
    • 57149111586 scopus 로고    scopus 로고
    • Small RNA binding to 5′ mRNA coding region inhibits translational initiation
    • Bouvier,M, Sharma,C.M., Mika,F., Nierhaus,K.H. and Vogel,J. (2008) Small RNA binding to 5′ mRNA coding region inhibits translational initiation. Mol. Cell, 32, 751-753.
    • (2008) Mol. Cell , vol.32 , pp. 751-753
    • Bouvier, M.1    Sharma, C.M.2    Mika, F.3    Nierhaus, K.H.4    Vogel, J.5
  • 37
    • 0031113943 scopus 로고    scopus 로고
    • An efficient random mutagenesis technique using an E. coli mutator strain
    • Greener,A., Callahan,M. and Jerpseth,B. (1997) An efficient random mutagenesis technique using an E. coli mutator strain. Mol. Biotechnol., 7, 189-195.
    • (1997) Mol. Biotechnol , vol.7 , pp. 189-195
    • Greener, A.1    Callahan, M.2    Jerpseth, B.3
  • 38
    • 19644371928 scopus 로고    scopus 로고
    • One-step random mutagenesis by error-prone rolling circle amplification
    • Fujii,R., Kitaoka,M. and Hayashi,K. (2004) One-step random mutagenesis by error-prone rolling circle amplification. Nucleic Acids Res., 32, e145.
    • (2004) Nucleic Acids Res , vol.32
    • Fujii, R.1    Kitaoka, M.2    Hayashi, K.3
  • 39
    • 0043194096 scopus 로고    scopus 로고
    • Targeted gene evolution in Escherichia coli using a highly error-prone DNA polymerase I
    • Camps,M., Naukkarinen,J., Johnson,B.P. and Loeb,L.A. (2003) Targeted gene evolution in Escherichia coli using a highly error-prone DNA polymerase I. Proc. Natl Acad. Sci. USA, 100, 9727-9732.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 9727-9732
    • Camps, M.1    Naukkarinen, J.2    Johnson, B.P.3    Loeb, L.A.4
  • 40
    • 18844392599 scopus 로고    scopus 로고
    • Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli
    • Alper,H., Jin,Y.S., Moxley,J.F. and Stephanopoulos,G. (2005) Identifying gene targets for the metabolic engineering of lycopene biosynthesis in Escherichia coli. Metab. Eng., 7, 155-164.
    • (2005) Metab. Eng , vol.7 , pp. 155-164
    • Alper, H.1    Jin, Y.S.2    Moxley, J.F.3    Stephanopoulos, G.4
  • 45
    • 0024283925 scopus 로고
    • The nucleotide-sequence of pACYC184
    • Rose,R.E. (1988) The nucleotide-sequence of pACYC184. Nucleic Acids Res., 16, 355.
    • (1988) Nucleic Acids Res , vol.16 , pp. 355
    • Rose, R.E.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.