-
1
-
-
55749108537
-
NMR structures of two designed proteins with high sequence identity but different fold and function
-
He, Y., Chen, Y., Alexander, P., Bryan, P. N., and Orban, J. (2008) NMR structures of two designed proteins with high sequence identity but different fold and function. Proc. Natl. Acad. Sci. U.S.A. 105, 14412-14417.
-
(2008)
Proc. Natl. Acad. Sci. U.S.A.
, vol.105
, pp. 14412-14417
-
-
He, Y.1
Chen, Y.2
Alexander, P.3
Bryan, P.N.4
Orban, J.5
-
2
-
-
0033815822
-
Understanding the sequence determinants of conformational switching using protein design
-
Dalal, S., and Regan, L. (2000) Understanding the sequence determinants of conformational switching using protein design. Protein Sci. 9, 1651-1659. (Pubitemid 30745463)
-
(2000)
Protein Science
, vol.9
, Issue.9
, pp. 1651-1659
-
-
Dalal, S.1
Regan, L.2
-
3
-
-
0032708771
-
Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding
-
Chiti, F., Taddei, N., White, P. M., Bucciantini, M., Magherini, F., Stefani, M., and Dobson, C. M. (1999) Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding. Nat. Struct. Biol. 6, 1005-1009.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1005-1009
-
-
Chiti, F.1
Taddei, N.2
White, P.M.3
Bucciantini, M.4
Magherini, F.5
Stefani, M.6
Dobson, C.M.7
-
4
-
-
0032750509
-
The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved
-
Martinez, J. C., and Serrano, L. (1999) The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved. Nat. Struct. Biol. 6, 1010-1016.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 1010-1016
-
-
Martinez, J.C.1
Serrano, L.2
-
5
-
-
0037423705
-
Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: Similarities and differences in the folding of homologous proteins
-
Friel, C. T., Capaldi, A. P., and Radford, S. E. (2003) Structural analysis of the rate-limiting transition states in the folding of Im7 and Im9: similarities and differences in the folding of homologous proteins. J. Mol. Biol. 326, 293-305.
-
(2003)
J. Mol. Biol.
, vol.326
, pp. 293-305
-
-
Friel, C.T.1
Capaldi, A.P.2
Radford, S.E.3
-
6
-
-
4644231179
-
A common folding mechanism in the cytochrome c family
-
Travaglini-Allocatelli, C., Gianni, S., and Brunori, M. (2004) A common folding mechanism in the cytochrome c family. Trends Biochem. Sci. 29, 535-541.
-
(2004)
Trends Biochem. Sci.
, vol.29
, pp. 535-541
-
-
Travaglini-Allocatelli, C.1
Gianni, S.2
Brunori, M.3
-
7
-
-
33847712992
-
A conserved folding mechanism for PDZ domains
-
DOI 10.1016/j.febslet.2007.02.011, PII S0014579307001603
-
Chi, C. N., Gianni, S., Calosci, N., Travaglini-Allocatelli, C., Engstrom, K., and Jemth, P. (2007) A conserved folding mechanism for PDZ domains. FEBS Lett. 581, 1109-1113. (Pubitemid 46385932)
-
(2007)
FEBS Letters
, vol.581
, Issue.6
, pp. 1109-1113
-
-
Chi, C.N.1
Gianni, S.2
Calosci, N.3
Travaglini-Allocatelli, C.4
Engstrom, A.5
Jemth, P.6
-
8
-
-
0025020007
-
Striking increase of survival of mice bearing M109 Madison carcinoma treated with a novel protein from amphibian embryos
-
Mikulski, S. M., Ardelt, W., Shogen, K., Bernstein, E. H., and Menduke, H. (1990) Striking increase of survival of mice bearing M109 Madison carcinoma treated with a novel protein from amphibian embryos. J. Natl. Cancer Inst. 82, 151-153.
-
(1990)
J. Natl. Cancer Inst.
, vol.82
, pp. 151-153
-
-
Mikulski, S.M.1
Ardelt, W.2
Shogen, K.3
Bernstein, E.H.4
Menduke, H.5
-
9
-
-
39749196230
-
The interdependence between catalytic activity, conformational stability, and cytotoxicity of onconase
-
Schulenburg, C., Ardelt, B., Ardelt, W., Arnold, U., Shogen, K., Ulbrich-Hofmann, R., and Darzynkiewicz, Z. (2007) The interdependence between catalytic activity, conformational stability, and cytotoxicity of onconase. Cancer Biol. Ther. 6, 1233-1239.
-
(2007)
Cancer Biol. Ther.
, vol.6
, pp. 1233-1239
-
-
Schulenburg, C.1
Ardelt, B.2
Ardelt, W.3
Arnold, U.4
Shogen, K.5
Ulbrich-Hofmann, R.6
Darzynkiewicz, Z.7
-
10
-
-
33645225294
-
Contribution of structural peculiarities of onconase to its high stability and folding kinetics
-
Arnold, U., Schulenburg, C., Schmidt, D., and Ulbrich-Hofmann, R. (2006) Contribution of structural peculiarities of onconase to its high stability and folding kinetics. Biochemistry 45, 3580-3587.
-
(2006)
Biochemistry
, vol.45
, pp. 3580-3587
-
-
Arnold, U.1
Schulenburg, C.2
Schmidt, D.3
Ulbrich-Hofmann, R.4
-
11
-
-
0028266432
-
Refined 1.7 Å X-ray crystallographic structure of P-30 protein, an amphibian ribonuclease with anti-tumor activity
-
Mosimann, S. C., Ardelt, W., and James, M. N. (1994) Refined 1.7 Å X-ray crystallographic structure of P-30 protein, an amphibian ribonuclease with anti-tumor activity. J. Mol. Biol. 236, 1141-1153.
-
(1994)
J. Mol. Biol.
, vol.236
, pp. 1141-1153
-
-
Mosimann, S.C.1
Ardelt, W.2
James, M.N.3
-
12
-
-
0018556595
-
Role of proline isomerization in folding of ribonuclease a at low temperatures
-
Cook, K. H., Schmid, F. X., and Baldwin, R. L. (1979) Role of proline isomerization in folding of ribonuclease A at low temperatures. Proc. Natl. Acad. Sci. U.S.A. 76, 6157-6161.
-
(1979)
Proc. Natl. Acad. Sci. U.S.A.
, vol.76
, pp. 6157-6161
-
-
Cook, K.H.1
Schmid, F.X.2
Baldwin, R.L.3
-
13
-
-
0020709918
-
Isomerization of proline-93 during the unfolding and refolding of ribonuclease a
-
Lin, L. N., and Brandts, J. F. (1983) Isomerization of proline-93 during the unfolding and refolding of ribonuclease A. Biochemistry 22, 559-563.
-
(1983)
Biochemistry
, vol.22
, pp. 559-563
-
-
Lin, L.N.1
Brandts, J.F.2
-
14
-
-
0021113912
-
Mechanism of folding of ribonuclease A. Slow refolding is a sequential reaction via structural intermediates
-
Schmid, F. X. (1983) Mechanism of folding of ribonuclease A. Slow refolding is a sequential reaction via structural intermediates. Biochemistry 22, 4690-4696.
-
(1983)
Biochemistry
, vol.22
, pp. 4690-4696
-
-
Schmid, F.X.1
-
15
-
-
0028931751
-
Kinetics of hydrogen bond breakage in the process of unfolding of ribonuclease a measured by pulsed hydrogen exchange
-
Kiefhaber, T., and Baldwin, R. L. (1995) Kinetics of hydrogen bond breakage in the process of unfolding of ribonuclease A measured by pulsed hydrogen exchange. Proc. Natl. Acad. Sci. U.S.A. 92, 2657-2661.
-
(1995)
Proc. Natl. Acad. Sci. U.S.A.
, vol.92
, pp. 2657-2661
-
-
Kiefhaber, T.1
Baldwin, R.L.2
-
16
-
-
0029811091
-
Structure of a hydrophobically collapsed intermediate on the conformational folding pathway of ribonuclease a probed by hydrogen-deuterium exchange
-
Houry, W. A., and Scheraga, H. A. (1996) Structure of a hydrophobically collapsed intermediate on the conformational folding pathway of ribonuclease A probed by hydrogen-deuterium exchange. Biochemistry 35, 11734-11746.
-
(1996)
Biochemistry
, vol.35
, pp. 11734-11746
-
-
Houry, W.A.1
Scheraga, H.A.2
-
17
-
-
0038546984
-
Protein prosthesis: A nonnatural residue accelerates folding and increases stability
-
Arnold, U., Hinderaker, M. P., Köditz, J., Golbik, R., Ulbrich-Hofmann, R., and Raines, R. T. (2003) Protein prosthesis: a nonnatural residue accelerates folding and increases stability. J. Am. Chem. Soc. 125, 7500-7501.
-
(2003)
J. Am. Chem. Soc.
, vol.125
, pp. 7500-7501
-
-
Arnold, U.1
Hinderaker, M.P.2
Köditz, J.3
Golbik, R.4
Ulbrich-Hofmann, R.5
Raines, R.T.6
-
18
-
-
35548945415
-
Protein prosthesis: 1,5-disubstituted[1,2,3]triazoles as cis-peptide bond surrogates
-
Tam, A., Arnold, U., Soellner, M. B., and Raines, R. T. (2007) Protein prosthesis: 1,5-disubstituted[1,2,3]triazoles as cis-peptide bond surrogates. J. Am. Chem. Soc. 129, 12670-12671.
-
(2007)
J. Am. Chem. Soc.
, vol.129
, pp. 12670-12671
-
-
Tam, A.1
Arnold, U.2
Soellner, M.B.3
Raines, R.T.4
-
19
-
-
46749096850
-
Back to the future: Ribonuclease a
-
Marshall, G. R., Feng, J. A., and Kuster, D. J. (2008) Back to the future: ribonuclease A. Biopolymers 90, 259-277.
-
(2008)
Biopolymers
, vol.90
, pp. 259-277
-
-
Marshall, G.R.1
Feng, J.A.2
Kuster, D.J.3
-
21
-
-
0024995943
-
Detection and characterization of a folding intermediate in barnase by NMR
-
DOI 10.1038/346488a0
-
Bycroft, M., Matouschek, A., Kellis, J. T., Jr., Serrano, L., and Fersht, A. R. (1990) Detection and characterization of a folding intermediate in barnase by NMR. Nature 346, 488-490. (Pubitemid 20251070)
-
(1990)
Nature
, vol.346
, Issue.6283
, pp. 488-490
-
-
Bycroft, M.1
Matouschek, A.2
Kellis Jr., J.T.3
Serrano, L.4
Fersht, A.R.5
-
22
-
-
0026751786
-
The folding of hen lysozyme involves partially structured intermediates and multiple pathways
-
Radford, S. E., Dobson, C. M., and Evans, P. A. (1992) The folding of hen lysozyme involves partially structured intermediates and multiple pathways. Nature 358, 302-307.
-
(1992)
Nature
, vol.358
, pp. 302-307
-
-
Radford, S.E.1
Dobson, C.M.2
Evans, P.A.3
-
23
-
-
0021104986
-
Folding of homologous proteins. the refolding of different ribonucleases is independent of sequence variations, proline content and glycosylation
-
Krebs, H., Schmid, F. X., and Jaenicke, R. (1983) Folding of homologous proteins. The refolding of different ribonucleases is independent of sequence variations, proline content and glycosylation. J. Mol. Biol. 169, 619-635.
-
(1983)
J. Mol. Biol.
, vol.169
, pp. 619-635
-
-
Krebs, H.1
Schmid, F.X.2
Jaenicke, R.3
-
24
-
-
0022427457
-
Native-like folding intermediates of homologous ribonucleases
-
Krebs, H., Schmid, F. X., and Jaenicke, R. (1985) Native-like folding intermediates of homologous ribonucleases. Biochemistry 24, 3846-3852.
-
(1985)
Biochemistry
, vol.24
, pp. 3846-3852
-
-
Krebs, H.1
Schmid, F.X.2
Jaenicke, R.3
-
25
-
-
33748286745
-
Correlation of folding kinetics with the number and isomerization states of prolines in three homologous proteins of the RNase family
-
DOI 10.1016/j.febslet.2006.08.024, PII S0014579306009926
-
Pradeep, L., Shin, H. C., and Scheraga, H. A. (2006) Correlation of folding kinetics with the number and isomerization states of prolines in three homologous proteins of the RNase family. FEBS Lett. 580, 5029-5032. (Pubitemid 44332375)
-
(2006)
FEBS Letters
, vol.580
, Issue.21
, pp. 5029-5032
-
-
Pradeep, L.1
Shin, H.-C.2
Scheraga, H.A.3
-
26
-
-
0032486107
-
Side-chain effects on peptidyl-prolyl cis/trans isomerisation
-
Reimer, U., Scherer, G., Drewello, M., Kruber, S., Schutkowski, M., and Fischer, G. (1998) Side-chain effects on peptidyl-prolyl cis/trans isomerisation. J. Mol. Biol. 279, 449-460.
-
(1998)
J. Mol. Biol.
, vol.279
, pp. 449-460
-
-
Reimer, U.1
Scherer, G.2
Drewello, M.3
Kruber, S.4
Schutkowski, M.5
Fischer, G.6
-
27
-
-
35748985538
-
Identification of three phases in Onconase refolding
-
DOI 10.1111/j.1742-4658.2007.06106.x
-
Schulenburg, C., Martinez-Senac, M. M., Löw, C., Golbik, R., Ulbrich-Hofmann, R., and Arnold, U. (2007) Identification of three phases in onconase refolding. FEBS J. 274, 5826-5833. (Pubitemid 350045797)
-
(2007)
FEBS Journal
, vol.274
, Issue.22
, pp. 5826-5833
-
-
Schulenburg, C.1
Martinez-Senac, M.M.2
Low, C.3
Golbik, R.4
Ulbrich-Hofmann, R.5
Arnold, U.6
-
28
-
-
0015918856
-
Kinetics of unfolding and refolding of proteins. I. Mathematical analysis
-
Ikai, A., and Tanford, C. (1973) Kinetics of unfolding and refolding of proteins. I. Mathematical analysis. J. Mol. Biol. 73, 145-163.
-
(1973)
J. Mol. Biol.
, vol.73
, pp. 145-163
-
-
Ikai, A.1
Tanford, C.2
-
29
-
-
84888350458
-
-
Wiley-VCH, Weinheim.
-
Bachmann, A., and Kiefhaber, T. (2005) Kinetic mechanisms in protein folding , Vol.1, Wiley-VCH, Weinheim.
-
(2005)
Kinetic Mechanisms in Protein Folding
, vol.1
-
-
Bachmann, A.1
Kiefhaber, T.2
-
31
-
-
0029400480
-
NMRPipe: A multidimensional spectral processing system based on UNIX pipes
-
Delaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A. (1995) NMRPipe: a multidimensional spectral processing system based on UNIX pipes. J. Biomol. NMR 6, 277-293.
-
(1995)
J. Biomol. NMR
, vol.6
, pp. 277-293
-
-
Delaglio, F.1
Grzesiek, S.2
Vuister, G.W.3
Zhu, G.4
Pfeifer, J.5
Bax, A.6
-
32
-
-
4644259437
-
Using NMRView to visualize and analyze the NMR spectra of macromolecules
-
Johnson, B. A. (2004) Using NMRView to visualize and analyze the NMR spectra of macromolecules. Methods Mol. Biol. 278, 313-352.
-
(2004)
Methods Mol. Biol.
, vol.278
, pp. 313-352
-
-
Johnson, B.A.1
-
34
-
-
0019486752
-
A native-like intermediate on the ribonuclease a folding pathway. 1. Detection by tyrosine fluorescence changes
-
Schmid, F. X. (1981) A native-like intermediate on the ribonuclease A folding pathway. 1. Detection by tyrosine fluorescence changes. Eur. J. Biochem. 114, 105-109.
-
(1981)
Eur. J. Biochem.
, vol.114
, pp. 105-109
-
-
Schmid, F.X.1
-
35
-
-
0029903075
-
Thermal unfolding and proteolytic susceptibility of ribonuclease a
-
Arnold, U., Rücknagel, K. P., Schierhorn, A., and Ulbrich-Hofmann, R. (1996) Thermal unfolding and proteolytic susceptibility of ribonuclease A. Eur. J. Biochem. 237, 862-869.
-
(1996)
Eur. J. Biochem.
, vol.237
, pp. 862-869
-
-
Arnold, U.1
Rücknagel, K.P.2
Schierhorn, A.3
Ulbrich-Hofmann, R.4
-
36
-
-
0037176861
-
Characterization of the unfolding of ribonuclease a by a pulsed hydrogen exchange study: Evidence for competing pathways for unfolding
-
DOI 10.1021/bi011480p
-
Juneja, J., and Udgaonkar, J. B. (2002) Characterization of the unfolding of ribonuclease A by a pulsed hydrogen exchange study: evidence for competing pathways for unfolding. Biochemistry 41, 2641-2654. (Pubitemid 34168933)
-
(2002)
Biochemistry
, vol.41
, Issue.8
, pp. 2641-2654
-
-
Juneja, J.1
Udgaonkar, J.B.2
-
37
-
-
0029127076
-
Solvent isotope effect and protein stability
-
Makhatadze, G. I., Clore, G. M., and Gronenborn, A. M. (1995) Solvent isotope effect and protein stability. Nat. Struct. Biol. 2, 852-855.
-
(1995)
Nat. Struct. Biol.
, vol.2
, pp. 852-855
-
-
Makhatadze, G.I.1
Clore, G.M.2
Gronenborn, A.M.3
-
38
-
-
0028028126
-
Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme
-
DOI 10.1021/bi00248a013
-
Eyles, S. J., Radford, S. E., Robinson, C. V., and Dobson, C. M. (1994) Kinetic consequences of the removal of a disulfide bridge on the folding of hen lysozyme. Biochemistry 33, 13038-13048. (Pubitemid 24364751)
-
(1994)
Biochemistry
, vol.33
, Issue.44
, pp. 13038-13048
-
-
Eyles, S.J.1
Radford, S.E.2
Robinson, C.V.3
Dobson, C.M.4
-
39
-
-
0033845591
-
Localization and analysis of nonpolar regions in onconase
-
Kolbanovskaya, E. Y., Terwisscha van Scheltinga, A. C., Mukhortov, V. G., Ardelt, W., Beintema, J. J., and Karpeisky, M. Y. (2000) Localization and analysis of nonpolar regions in onconase. Cell. Mol. Life Sci. 57, 1306-1316.
-
(2000)
Cell. Mol. Life Sci.
, vol.57
, pp. 1306-1316
-
-
Kolbanovskaya, E.Y.1
Terwisscha Van Scheltinga, A.C.2
Mukhortov, V.G.3
Ardelt, W.4
Beintema, J.J.5
Karpeisky, M.Y.6
-
40
-
-
33947091990
-
A method for predicting nucleation sites for protein folding based on hydrophobic contacts
-
Matheson, J. R. R., and Scheraga, H. A. (1978) A method for predicting nucleation sites for protein folding based on hydrophobic contacts. Macromolecules 11, 819-829.
-
(1978)
Macromolecules
, vol.11
, pp. 819-829
-
-
Matheson, J.R.R.1
Scheraga, H.A.2
-
41
-
-
41149147117
-
Dissimilarity in the oxidative folding of onconase and ribonuclease A, two structural homologues
-
Gahl, R. F., Narayan, M., Xu, G., and Scheraga, H. A. (2008) Dissimilarity in the oxidative folding of onconase and ribonuclease A, two structural homologues. Protein Eng. Des. Sel. 21, 223-231.
-
(2008)
Protein Eng. Des. Sel.
, vol.21
, pp. 223-231
-
-
Gahl, R.F.1
Narayan, M.2
Xu, G.3
Scheraga, H.A.4
|