메뉴 건너뛰기




Volumn 15, Issue 7, 2009, Pages 1032-1038

Diagnosis of ulcerative colitis before onset of inflammation by multivariate modeling of genome-wide gene expression data

Author keywords

Gene expression; Microarray; PCA; Preinflammation; Random forest

Indexed keywords

ADULT; AGED; ARTICLE; COLON BIOPSY; COLON MUCOSA; CONTROLLED STUDY; CROHN DISEASE; DIAGNOSTIC ACCURACY; DIAGNOSTIC VALUE; DISEASE CLASSIFICATION; DNA MICROARRAY; FEMALE; GENE EXPRESSION; GENETIC ANALYSIS; GENETIC DATABASE; HISTOPATHOLOGY; HUMAN; HUMAN TISSUE; MAJOR CLINICAL STUDY; MALE; MULTIVARIATE ANALYSIS; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; RANDOM FOREST; REAL TIME POLYMERASE CHAIN REACTION; SENSITIVITY AND SPECIFICITY; ULCERATIVE COLITIS; VALIDATION PROCESS; BIOLOGICAL MODEL; BIOPSY; GENE EXPRESSION PROFILING; GENETICS; GENOMICS; IMMUNOLOGY; MIDDLE AGED; PATHOLOGY; PREDICTION AND FORECASTING; REPRODUCIBILITY; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; STANDARD;

EID: 69449108447     PISSN: 10780998     EISSN: 15364844     Source Type: Journal    
DOI: 10.1002/ibd.20879     Document Type: Article
Times cited : (105)

References (29)
  • 1
    • 0035116091 scopus 로고    scopus 로고
    • Inflammatory bowel disease: Immunodiagnostics, immunotherapeutics, and ecotherapeutics
    • Shanahan F. Inflammatory bowel disease: immunodiagnostics, immunotherapeutics, and ecotherapeutics. Gastroenterology. 2001;120:622-635.
    • (2001) Gastroenterology , vol.120 , pp. 622-635
    • Shanahan, F.1
  • 2
    • 34248136340 scopus 로고    scopus 로고
    • Inflammatory bowel disease: Clinical aspects and established and evolving therapies
    • Baumgart DC, Sandborn WJ. Inflammatory bowel disease: clinical aspects and established and evolving therapies. Lancet. 2007; 369:1641-1657.
    • (2007) Lancet , vol.369 , pp. 1641-1657
    • Baumgart, D.C.1    Sandborn, W.J.2
  • 3
    • 0142053206 scopus 로고    scopus 로고
    • The immunological and genetic basis of inflammatory bowel disease
    • Bouma G, Strober W. The immunological and genetic basis of inflammatory bowel disease. Nat Rev Immunol 2003;3:521-533.
    • (2003) Nat Rev Immunol , vol.3 , pp. 521-533
    • Bouma, G.1    Strober, W.2
  • 4
    • 34248136828 scopus 로고    scopus 로고
    • Inflammatory bowel disease: Cause and immunobiology
    • Baumgart DC, Carding SR. Inflammatory bowel disease: cause and immunobiology. Lancet. 2007;369:1627-1640.
    • (2007) Lancet , vol.369 , pp. 1627-1640
    • Baumgart, D.C.1    Carding, S.R.2
  • 5
    • 27644549042 scopus 로고    scopus 로고
    • State of the art: IBD therapy and clinical trials in IBD
    • Isaacs KL, Lewis JD, Sandborn WJ, et al. State of the art: IBD therapy and clinical trials in IBD. Inflamm Bowel Dis. 2005;11 Suppl 1:S3-12.
    • (2005) Inflamm Bowel Dis , vol.11 , Issue.SUPPL. 1
    • Isaacs, K.L.1    Lewis, J.D.2    Sandborn, W.J.3
  • 6
    • 33947671438 scopus 로고    scopus 로고
    • Pitfalls in the interpretation of nonneoplastic mucosal biopsies in inflammatory bowel disease
    • Yantiss RK, Odze RD. Pitfalls in the interpretation of nonneoplastic mucosal biopsies in inflammatory bowel disease. Am J Gastroenterol. 2007;102:890-904.
    • (2007) Am J Gastroenterol , vol.102 , pp. 890-904
    • Yantiss, R.K.1    Odze, R.D.2
  • 7
    • 0023926621 scopus 로고
    • The OMGE multinational inflammatory bowel disease survey 1976-1986. A further report on 3175 cases
    • Myren J, Bouchier IA, Watkinson G, et al. The OMGE multinational inflammatory bowel disease survey 1976-1986. A further report on 3175 cases. Scand J Gastroenterol Suppl. 1988;144:11-19.
    • (1988) Scand J Gastroenterol Suppl , vol.144 , pp. 11-19
    • Myren, J.1    Bouchier, I.A.2    Watkinson, G.3
  • 8
    • 0028819515 scopus 로고
    • Indeterminate colitis. Long-term outcome in patients after ileal pouch-anal anastomosis
    • McIntyre PB, Pemberton JH, Wolff BG, et al. Indeterminate colitis. Long-term outcome in patients after ileal pouch-anal anastomosis. Dis Colon Rectum. 1995;38:51-54.
    • (1995) Dis Colon Rectum , vol.38 , pp. 51-54
    • McIntyre, P.B.1    Pemberton, J.H.2    Wolff, B.G.3
  • 9
    • 0036198721 scopus 로고    scopus 로고
    • Application of genome-wide gene expression profiling by high-density DNA arrays to the treatment and study of inflammatory bowel disease
    • Warner EE, Dieckgraefe BK. Application of genome-wide gene expression profiling by high-density DNA arrays to the treatment and study of inflammatory bowel disease. Inflamm Bowel Dis. 2002;8:140-157.
    • (2002) Inflamm Bowel Dis , vol.8 , pp. 140-157
    • Warner, E.E.1    Dieckgraefe, B.K.2
  • 10
    • 0035282710 scopus 로고    scopus 로고
    • Ulcerative colitis and Crohn's disease: Distinctive gene expression profiles and novel susceptibility candidate genes
    • Lawrance IC, Fiocchi C, Chakravarti S. Ulcerative colitis and Crohn's disease: distinctive gene expression profiles and novel susceptibility candidate genes. Hum Mol Genet. 2001;10:445-456.
    • (2001) Hum Mol Genet , vol.10 , pp. 445-456
    • Lawrance, I.C.1    Fiocchi, C.2    Chakravarti, S.3
  • 11
    • 0034745979 scopus 로고    scopus 로고
    • The use of 1H magnetic resonance spectroscopy in inflammatory bowel diseases: Distinguishing ulcerative colitis from Crohn's disease
    • Bezabeh T, Somorjai RL, Smith IC, et al. The use of 1H magnetic resonance spectroscopy in inflammatory bowel diseases: distinguishing ulcerative colitis from Crohn's disease. Am J Gastroenterol. 2001;96: 442-448.
    • (2001) Am J Gastroenterol , vol.96 , pp. 442-448
    • Bezabeh, T.1    Somorjai, R.L.2    Smith, I.C.3
  • 12
    • 0036104086 scopus 로고    scopus 로고
    • Geboes K, Dalle I. Influence of treatment on morphological features of mucosal inflammation. Gut. 2002;50(Suppl 3):III37-III42.
    • Geboes K, Dalle I. Influence of treatment on morphological features of mucosal inflammation. Gut. 2002;50(Suppl 3):III37-III42.
  • 13
    • 34147141448 scopus 로고    scopus 로고
    • Expression of the genes dual oxidase 2, lipocalin 2, and regenerating islet-derived 1 alpha in Crohn's disease
    • Csillag C, Nielsen OH, Vainer B, et al. Expression of the genes dual oxidase 2, lipocalin 2, and regenerating islet-derived 1 alpha in Crohn's disease. Scand J Gastroenterol. 2007;42:454-563.
    • (2007) Scand J Gastroenterol , vol.42 , pp. 454-563
    • Csillag, C.1    Nielsen, O.H.2    Vainer, B.3
  • 15
    • 0035478854 scopus 로고    scopus 로고
    • Random forest
    • Breiman L. Random forest. Machine Learn. 2001;45:5-32.
    • (2001) Machine Learn , vol.45 , pp. 5-32
    • Breiman, L.1
  • 16
    • 34248173349 scopus 로고    scopus 로고
    • Clinical update: Irritable bowel syndrome
    • Spiller R. Clinical update: irritable bowel syndrome. Lancet. 2007;369: 1586-1588.
    • (2007) Lancet , vol.369 , pp. 1586-1588
    • Spiller, R.1
  • 17
    • 33947174458 scopus 로고    scopus 로고
    • Metabolome, transcriptome and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation
    • Stegmann A, Hansen M, Wang Y, et al. Metabolome, transcriptome and bioinformatic cis-element analyses point to HNF-4 as a central regulator of gene expression during enterocyte differentiation. Physiol Genomics. 2006;27:141-155.
    • (2006) Physiol Genomics , vol.27 , pp. 141-155
    • Stegmann, A.1    Hansen, M.2    Wang, Y.3
  • 18
    • 85074914953 scopus 로고    scopus 로고
    • A PCR primer bank for quantitative gene expression analysis
    • Wang X, Seed B. A PCR primer bank for quantitative gene expression analysis. Nucleic Acids Res. 2003;31:e154.
    • (2003) Nucleic Acids Res , vol.31
    • Wang, X.1    Seed, B.2
  • 19
    • 22844434546 scopus 로고    scopus 로고
    • Gene transcripts as potential diagnostic markers for allergic contact dermatitis
    • Hansen MB, Skov L, Mennée T, et al. Gene transcripts as potential diagnostic markers for allergic contact dermatitis. Contact Dermat. 2005;53:100-106.
    • (2005) Contact Dermat , vol.53 , pp. 100-106
    • Hansen, M.B.1    Skov, L.2    Mennée, T.3
  • 20
    • 22544476811 scopus 로고    scopus 로고
    • Differentiation-dependent activation of the human intestinal alkaline phosphatase promoter by HNF-4 in intestinal cells
    • Olsen L, Bressendorff S, Troelsen JT, et al. Differentiation-dependent activation of the human intestinal alkaline phosphatase promoter by HNF-4 in intestinal cells. Am J Physiol Gastrointest Liver Physiol. 2005;289:G220-G226.
    • (2005) Am J Physiol Gastrointest Liver Physiol , vol.289
    • Olsen, L.1    Bressendorff, S.2    Troelsen, J.T.3
  • 22
    • 28744458859 scopus 로고    scopus 로고
    • Bioconductor: Open software development for computational biology and bioinformatics
    • Gentleman RC, Carey VJ, Bates DM, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004;5:R80.
    • (2004) Genome Biol , vol.5
    • Gentleman, R.C.1    Carey, V.J.2    Bates, D.M.3
  • 23
    • 35348883594 scopus 로고    scopus 로고
    • Gene expression time-course in the human skin during elicitation of allergic contact dermatitis
    • Pedersen MB, Skov L, Menné T, et al. Gene expression time-course in the human skin during elicitation of allergic contact dermatitis. J Invest Dermatol. 2007;127:2585-2595.
    • (2007) J Invest Dermatol , vol.127 , pp. 2585-2595
    • Pedersen, M.B.1    Skov, L.2    Menné, T.3
  • 24
    • 21844473579 scopus 로고    scopus 로고
    • GoSurfer: A graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space
    • Zhong S, Storch KF, Lipan O, et al. GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space. Appl Bioinform. 2004;3:261-264.
    • (2004) Appl Bioinform , vol.3 , pp. 261-264
    • Zhong, S.1    Storch, K.F.2    Lipan, O.3
  • 25
    • 0035942271 scopus 로고    scopus 로고
    • Significance analysis of microarrays applied to the ionizing radiation response
    • Tusher VG, Tibshirani R, Chu G. Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci U S A. 2001;98:5116-5121.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 5116-5121
    • Tusher, V.G.1    Tibshirani, R.2    Chu, G.3
  • 27
    • 33644847555 scopus 로고    scopus 로고
    • Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays
    • Costello CM, Mah N, Hasler R, et al. Dissection of the inflammatory bowel disease transcriptome using genome-wide cDNA microarrays. PLoS Med. 2005;2:e199.
    • (2005) PLoS Med , vol.2
    • Costello, C.M.1    Mah, N.2    Hasler, R.3
  • 28
    • 34547621585 scopus 로고    scopus 로고
    • Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: Insights into distinctive pathogenesis
    • Wu F, Dassopoulos T, Cope L, et al. Genome-wide gene expression differences in Crohn's disease and ulcerative colitis from endoscopic pinch biopsies: insights into distinctive pathogenesis. Inflamm Bowel Dis. 2007;13:807-821.
    • (2007) Inflamm Bowel Dis , vol.13 , pp. 807-821
    • Wu, F.1    Dassopoulos, T.2    Cope, L.3
  • 29
    • 3242735503 scopus 로고    scopus 로고
    • Loss of detoxification in inflammatory bowel disease: Dysregulation of pregnane X receptor target genes
    • Langmann T, Moehle C, Mauerer R, et al. Loss of detoxification in inflammatory bowel disease: dysregulation of pregnane X receptor target genes. Gastroenterology. 2004;127:26-40.
    • (2004) Gastroenterology , vol.127 , pp. 26-40
    • Langmann, T.1    Moehle, C.2    Mauerer, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.