Whole genome scan to detect chromosomal regions affecting multiple traits in dairy cattle

Journal of Dairy Science

Volumn 87, Issue 10, 2004, Pages 3550-3560

  Schrooten, C ^a,b   Bink, M C A M ^a   Bovenhuis, H ^a  

^a WAGENINGEN UNIVERSITY   (Netherlands)

^b HG   (Netherlands)

Author keywords

Dairy cattle; Genome scan; Multiple trait; Quantitative trait locus

Indexed keywords

BOS; BOS TAURUS; MAMMALIA;

EID: 6944238975     PISSN: 00220302     EISSN: None     Source Type: Journal    
DOI: 10.3168/jds.S0022-0302(04)73492-X     Document Type: Article

References (26)

1. Ashwell, M. S., Y. Da, C. P. Van Tassell, P. M. Vanraden, R. H. Miller, and C. E. Rexroad, Jr. 1998. Detection of putative loci affecting milk production and composition, health, and type traits in a United States Holstein population. J. Dairy Sci. 81:3309-3314.
2. Benjamini, Y., and Y. Hochberg. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Statist. Soc. 57:289-300.
3. Blott, S., J. J. Kim, S. Moisio, A. Schmidt-Kuntzel, A. Cornet, P. Berzi, N. Cambisano, C. Ford, B. Grisart, D. Johnson, L. Karim, P. Simon, R. Snell, R. Spelman, J. Wong, J. Vilkki, M. Georges, F. Farnir, and W. Coppieters. 2003. Molecular dissection of a quantitative trait locus. A phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. Genetics 163:253-266.
4. Churchill, G. A., and R. W. Doerge. 1994. Empirical threshold values for quantitative trait mapping. Genetics 138:963-971.
5. de Koning, G. J., and J. I. Weller. 1994. Efficiency of direct selection on quantitative trait loci for a two-trait breeding objective. Theor. Appl. Genet. 88:669-677.
6. Falconer, D. S., and T. F. C. Mackay. 1996. Introduction to Quantitative Genetics. Longman, Essex, United Kingdom.
7. Freyer, G., C. Kühn, R. Weikard, Q. Zhang, M. Mayer, and I. Hoeschele. 2002. Multiple QTL on chromosome six in dairy cattle affecting yield and content traits. J. Anim. Breed. Genet. 119:69-82.
8. Georges, M., D. Nielsen, M. Mackinnon, A. Mishra, R. Okimoto, A. T. Pasquino, L. S. Sargeant, A. Sorensen, M. R. Steele, X. Zhao, J. E. Womack, and I. Hoeschele. 1995. Mapping quantitative trait loci controlling milk production in dairy cattle by exploiting progeny testing. Genetics 139:907-920.
9. Grisart, B., W. Coppieters, F. Farnir, L. Karim, C. Ford, P. Berzi, N. Cambisano, M. Mni, S. Reid, P. Simon, R. Spelman, M. Georges, and R. Snell. 2002. Positional candidate cloning of a QTL in dairy cattle: Identification of a missense mutation in bovine DGAT1 gene with major effect on milk yield and composition. Genome Res. 12:222-231.
10. Jiang, C., and Z.-B. Zeng. 1995. Multiple trait analysis of genetic mapping for quantitative trait loci. Genetics 140:1111-1127.
11. Kashi, Y., E. Hallerman, and M. Soller. 1990. Marker assisted selection of candidate young bulls for progeny testing programmes. Anim. Prod. 51:63-74.
12. Knott, S. A., J. M. Elsen, and C. S. Haley. 1994. Multiple marker mapping of quantitative trait loci in half sib populations. Proc. 5th World Congr. Genet. Appl. Livest. Prod., Guelph, Canada XXI:33-36.
13. Knott, S. A., and C. S. Haley. 2000. Multitrait least squares for quantitative trait loci detection. Genetics 156:899-911.
14. Korol, A. B., Y. I. Ronin, and V. M. Kirzhner. 1995. Interval mapping of quantitative trait loci employing correlated trait complexes. Genetics 140:1137-1147.
15. Korol, A. B., Y. I. Ronin, E. Nevo, and P. Hayes. 2001. Enhanced efficiency of quantitative trait loci mapping analysis based on multivariate complexes of quantitative traits. Genetics 157:1789-1803.
16. Lebreton, C. M., P. M. Visscher, C. S. Haley, A. Semikhodskii, and S. A. Quarrie. 1998. A nonparametric bootstrap method for testing close linkage vs. pleiotropy of coincident quantitative trait loci. Genetics 150:931-943.
17. Lipkin, E., G. Grosman, E. Tchourzyna, A. Friedmann, and M. Soller. 2002. QTL affecting milk protein percent also affect milk yield and protein yield. Proc. 7th World Congr. Genet. Appl. Livest. Prod., Montpellier, France 31:55-58.
18. Lund, M. S., P. Sørensen, B. Guldbrandtsen, and D. A. Sorensen. 2003. Multitrait fine mapping of quantitative trait loci using combined linkage disequilibria and linkage analysis. Genetics 163:405-410.
19. Meuwissen, T. H., and J. A. M. Van Arendonk. 1992. Potential improvements in rate of genetic gain from marker-assisted selection in dairy cattle breeding schemes. J. Dairy Sci. 75:1651-1659.
20. Mosig, M. O., E. Lipkin, G. Khutoreskaya, E. Tchourzyna, M. Soller, and A. Friedmann. 2001. A whole genome scan for quantitative trait loci affecting milk protein percentage in Israeli-Holstein cattle, by means of selective milk DNA pooling in a daughter design, using an adjusted false discovery rate criterion. Genetics 157:1683-1698.
21. Ron, M., D. Kliger, E. Feldmesser, E. Seroussi, E. Ezra, and J. I. Weller. 2001. Multiple quantitative trait locus analysis of bovine chromosome 6 in the Israeli Holstein Population by a Daughter Design. Genetics 159:727-735.
22. Schrooten, C., H. Bovenhuis, W. Coppieters, and J. A. M. Van Arendonk. 2000. Whole genome scan to detect quantitative trait loci for conformation and functional traits in dairy cattle. J. Dairy Sci. 83:795-806.
23. Schrooten, C., and H. Bovenhuis. 2002. Detection of pleiotropic effects of quantitative trait loci in outbred populations using regression analysis. J. Dairy Sci. 85:3503-3513.
24. Spelman, R. J., W. Coppieters, L. Karim, J. A. M. van Arendonk, and H. Bovenhuis. 1996. Quantitative trait loci analysis for five milk production traits on chromosome six in the Dutch Holstein-Friesian population. Genetics 144:1799-1808.
25. Weller, J. I., Y. Kashi, and M. Soller. 1990. Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. J. Dairy Sci. 73:2525-2537.
26. Weller, J. I., G. R. Wiggans, P. M. vanRaden, and M. Ron. 1996. Application of a canonical transformation to detection of quantitative trait loci with the aid of genetic markers in a multi-trait experiment. Theor. Appl. Genet. 92:998-1002.