Proteomics in the study of the molecular taxonomy and epidemiology of bacterial pathogens

Electrophoresis

Volumn 30, Issue SUPPL. 1, 2009, Pages

  Cash, Phillip ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

Author keywords

2 DE; Bacterial proteins; Epidemiology; Proteomics

Indexed keywords

BACTERIA; ELECTROPHORESIS; EPIDEMIOLOGY; MOLECULAR BIOLOGY; TAXONOMIES;

2-DE; BACTERIAL ISOLATES; BACTERIAL PATHOGENS; BACTERIAL PROTEIN; BACTERIAL TAXONOMIES; MEDICAL MICROBIOLOGIES; MOLECULAR EPIDEMIOLOGY; MOLECULAR TAXONOMY; PROTEOMICS; PROTEOMICS METHODS;

PROTEINS;

BACTERIAL PROTEIN;

BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIAL VIRULENCE; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; COLUMN CHROMATOGRAPHY; ESCHERICHIA COLI; HAEMOPHILUS INFLUENZAE; MASS SPECTROMETRY; MYCOBACTERIUM TUBERCULOSIS; NONHUMAN; POLYACRYLAMIDE GEL ELECTROPHORESIS; PROTEIN ELECTROPHORESIS; PROTEIN EXPRESSION; PROTEIN SYNTHESIS; PROTEOMICS; REPRODUCIBILITY; REVIEW; SENSITIVITY AND SPECIFICITY; TAXONOMY; TWO DIMENSIONAL ELECTROPHORESIS; BACTERIAL GENOME; INSTRUMENTATION; METHODOLOGY; TWO DIMENSIONAL GEL ELECTROPHORESIS;

BACTERIAL PROTEINS; BACTERIAL TYPING TECHNIQUES; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; GENOME, BACTERIAL; PROTEOMICS;

EID: 69249232133     PISSN: 01730835     EISSN: 15222683     Source Type: Journal    
DOI: 10.1002/elps.200900059     Document Type: Review

References (85)

1. O'Farrell, P. H., J. Biol. Chem. 1975, 250, 4007-4021.
2. Cash, P., Anal. Chim. Acta 1998, 372, 121-146.
3. Hecker, M., Antelmann, H., Buttner, K., Bernhardt, J., Proteomics 2008, 8, 4958-4975.
4. Costas, M., Electrophoresis 1990, 11, 382-391.
5. Costas, M., Holmes, B., Wood, A. C., J. Appl. Bacteriol. 1990, 68, 505-518.
6. Costas, M., Pot, B., Vandamme, P., Kersters, K., Owen, R. J., Hill, L. R., Electrophoresis 1990, 11, 467-474.
7. Costas, M., Holmes, B., Sloss, L. L., Heard, S. et al., Epidemiol. Infect. 1990, 105, 127-137.
8. Holmes, B., Costas, M., Wood, A. C., J. Appl. Bacteriol. 1991, 71, 467-476.
9. Morgan, D. R., Costas, M., Owen, R. J., Williams, E., A., Rev. Infect. Dis. 1991, 13, S709-S713.
10. Bisgaard, M., Brown, D. J., Costas, M., Ganner, M., Zentralbl. Bakteriol. 1993, 279, 92-103.
11. Laemmli, U. K., Nature 1970, 227, 680-685.
12. Palucha, A., Mikiewicz, B., Hryniewicz, W., Gniadkowski, M., J. Antimicrob. Chemother. 1999, 44, 489-499.
13. Tzelepi, E., Giakkoupi, P., Sofianou, D., Loukova, V., Kemeroglou, A., Tsakris, A., J. Clin. Microbiol. 2000, 38, 542-546.
14. Andres, P., Petroni, A., Faccone, D., Pasteran, F., Melano, R., Rapoport, M., Martinez, M. et al., Int. J. Antimicrob. Agents 2005, 25, 501-507.
15. Devriese, L. A., Vancanneyt, M., Descheemaeker, P., Baele, M., Van Landuyt, H. W., Gordts, B., Butaye, P. et al., J. Appl. Microbiol. 2002, 92, 821-827.
16. Liu, B., Li, H., Wu, S., Zhang, X., Xie, L., Can. J. Microbiol. 2006, 52, 753-758.
17. Baele, M., Decostere, A., Vandamme, P., Ceelen, L., Hellemans, A., Mast, J., Chiers, K. et al., Int. J. Syst. Evol. Microbiol. 2008, 58, 1350-1358.
18. Benito, M. J., Serradilla, M. J., Martin, A., Aranda, E., Hernandez, A., Cordoba, M. G., Food Microbiol. 2008, 25, 676-682.
19. Clements, D. A., MacInnes, S. J., Gilbert, G. L., J. Clin. Microbiol. 1992, 30, 1879-1881.
20. Biosca, E. G., Garay, E., Toranzo, A. E., Amaro, C., FEMS Microbiol. Lett. 1993, 107, 217-222.
21. Morgan, M. G., McKenzie, H., Enright, M. C., Bain, M., Emmanuel, F. X., Eur. J. Clin. Microbiol. Infect. Dis. 1992, 11, 305-312.
22. Duarte, R. S., Barros, R. R., Facklam, R. R., Teixeira, L. M., J. Clin. Microbiol. 2005, 43, 4592-4601.
23. Konecka, E., Kaznowski, A., Ziemnicka, J., Ziemnicki, K., J. Invertebr. Pathol. 2007, 94, 56-63.
24. Thurm, V., Dinger, E., Int. J. Food Microbiol. 1994, 24, 261-271.
25. Thurm, V., Ritter, E., Epidemiol. Infect. 1993, 111, 491-498.
26. Costas, M., Morgan, D. D., Owen, R. J., Morgan, D. R., Epidemiol. Infect. 1991, 107, 607-617.
27. Azuma, H., Okamoto, M., Oku, Y., Kamiya, M., Parasitol. Res. 1995, 81, 103-108.
28. Sondergaard, I., Jensen, K., Krath, B. N., Electrophoresis 1994, 15, 584-588.
29. Owen, R. J., Bickley, J., Hurtado, A., Fraser, A., Pounder, R. E., J. Clin. Microbiol. 1994, 32, 1203-1210.
30. Cash, P., Argo, E., Langford, P. R., Kroll, J. S., Electrophoresis 1997, 18, 1472-1482.
31. Klose, J., Humangenetik 1975, 26, 231-243.
32. Cash, P., Can. J. Microbiol. 1988, 34, 802-806.
33. Cash, P., Electrophoresis 1989, 10, 793-800.
34. McLaren, J., Argo, E., Cash, P., Electrophoresis 1993, 14, 137-147.
35. Gimenez, H. B., Amarasekera, D. S., Argo, E., Cash, P., Electrophoresis 1995, 16, 317-321.
36. Gow, J., Cash, P., Behan, W. H., McGarry, F., Simpson, K., Behan, P. O., Electrophoresis 1995, 16, 338-340.
37. Cash, P., Argo, E., Bruce, K. D., Electrophoresis 1995, 16, 135-148.
38. Unlu, M., Morgan, M. E., Minden, J. S., Electrophoresis 1997, 18, 2071-2077.
39. Cash, P., Electrophoresis 2000, 21, 1187-1201.
40. Birch, R. M., O'Byrne, C., Booth, I. R., Cash, P., Proteomics 2003, 3, 764-776.
41. Cash, P., Argo, E., Ford, L., Lawrie, L., McKenzie, H., Electrophoresis 1999, 20, 2259-2268.
42. Uwins, C., Deitrich, C., Argo, E., Stewart, E., Davidson, I., Cash, P., Electrophoresis 2006, 27, 1136-1146.
43. Tarroux, P., Electrophoresis 1983, 4, 63-70.
44. Anderson, N. L., Hofmann, J. P., Gemmell, A., Taylor, J., Clin. Chem. 1984, 30, 2031-2036.
45. Prahlad, K. R., Li, Q., J. Proteomics Bioinform. 2009, 2, 19-31.
46. Thornton, B., Osborne, S. M., Paterson, E., Cash, P., J. Exp. Bot. 2007, 58, 1581-1590.
47. Martin, S. A., Cash, P., Blaney, S., Houlihan, D. F., Fish Physiol. Biochem. 2001, 24, 259-270.
48. Smith, R. W., Wood, C. M., Cash, P., Diao, L., Part, P., Biochim. Biophys. Acta 2005, 1749, 81-93.
49. Nabi, G., N'Dow, J., Hassan, S. T., Booth, I. R., Cash, P., Proteomics 2005, 5, 1729-1733.
50. Fowler, P. A., Tattum, J., Bhattacharya, S., Klonisch, T., Hombach-Klonisch, S., Gazvani, R., Lea, R. G., Proteomics 2007, 7, 130-142.
51. Fleischmann, R. D., Adams, M. D., White, O., Clayton, R. A., Kirkness, E. F., Kerlavage, A. R., Bult, C. J. et al., Science 1995, 269, 496-511.
52. Langen, H., Gray, C., Roder, D., Juranville, J. F., Takacs, B., Fountoulakis, M., Electrophoresis 1997, 18, 1184-1192.
53. Evers, S., Di Padova, K., Meyer, M., Fountoulakis, M., Keck, W., Gray, C. P., Electrophoresis 1998, 19, 1980-1988.
54. Kolker, E., Purvine, S., Galperin, M. Y., Stolyar, S., Goodlett, D. R., Nesvizhskii, A. I., Keller, A. et al., J. Bacteriol. 2003, 185, 4593-4602.
55. Link, A. J., Hays, L. G., Carmack, E. B., Yates, J. R., Electrophoresis 1997, 18, 1314-1334.
56. Fountoulakis, M., Langen, H., Evers, S., Gray, C., Takacs, B., Electrophoresis 1997, 18, 1193-1202.
57. Fountoulakis, M., Takacs, B., Langen, H., Electrophoresis 1998, 19, 761-766.
58. Fountoulakis, M., Juranville, J. F., Roder, D., Evers, S., Berndt, P., Langen, H., Electrophoresis 1998, 19, 1819-1827.
59. Langen, H., Takacs, B., Evers, S., Berndt, P., Lahm, H. W., Wipf, W., Gray, C. et al., Electrophoresis 2000, 21, 411-429.
60. Cordwell, S. J., Nouwens, A. S., Verrills, N. M., McPherson, J. C., Hains, P. G., van Dyk, D. D., Walsh, B. J., Electrophoresis 1999, 20, 3580-3588.
61. Hernychova, L., Stulik, J., Halada, P., Macela, A., Kroca, M., Johansson, T., Malina, M., Proteomics 2001, 1, 508-515.
62. Pleissner, K. P., Eifert, T., Buettner, S., Schmidt, F., Boehme, M., Meyer, T. F., Kaufmann, S. H. E. et al., Proteomics 2004, 4, 1305-1313.
63. Schmidt, F., Donahoe, S., Hagens, K., Mattow, J., Schaible, U. E., Kaufmann, S. H., Aebersold, R. et al., Mol. Cell. Proteomics 2004, 3, 24-42.
64. Wolff, S., Antelmann, H., Albrecht, D., Becher, D., Bernhardt, J., Bron, S., Buttner, K. et al., J. Chromatogr. B: Anal. Technol. Biomed. Life Sci. 2007, 849, 129-140.
65. Enroth, H., Akerlund, T., Sille, A., Engstrand, L., Clin. Diag. Lab. Immunol. 2000, 7, 301-306.
66. Park, S. A., Lee, H. W., Hong, M. H., Choi, Y. W., Choe, Y. H., Ahn, B. Y., Cho, Y. J. et al., Proteomics 2006, 6, 1319-1328.
67. Schmid, O., Ball, G., Lancashire, L., Culak, R., Shah, H., J. Med. Microbiol. 2005, 54, 1205-1211.
68. Conway, G. C., Smole, S. C., Sarracino, D. A., Arbeit, R. D., Leopold, P. E., J. Mol. Microbiol. Biotechnol. 2001, 3, 103-112.
69. Williamson, Y. M., Moura, H., Woolfitt, A. R., Pirkle, J. L., Barr, J. R., Carvalho Mda, G., Ades, E. P. et al., Appl. Environ. Microbiol. 2008, 74, 5891-5897.
70. Demirev, P. A., Lin, J. S., Pineda, F. J., Fenselaut, C., Anal. Chem. 2001, 73, 4566-4573.
71. Allan, I., Loeb, M. R., Moxon, E. R., Microb. Pathog. 1987, 2, 139-145.
72. Shortridge, V. D., Stone, G. G., Flamm, R. K., Beyer, J., Versalovic, J., Graham, D. W., Tanaka, S. K., J. Clin. Microbiol. 1997, 35, 471-473.
73. Tenover, F. C., Arbeit, R. D., Goering, R. V., Mickelsen, P. A., Murray, B. E., Persing, D. H., Swaminathan, B., J. Clin. Microbiol. 1995, 33, 2233-2239.
74. Jacobson, M. J., Lin, G., Whittam, T. S., Johnson, E. A., Microbiology 2008, 154, 2408-2415.
75. Morozova, O., Marra, M. A., Genomics 2008, 92, 255-264.
76. Jackson, P., Thornley, M. J., Thompson, R. J., J. Gen. Microbiol. 1984, 130, 3189-3201.
77. Andersen, H., Christiansen, G., Christiansen, C., J. Gen. Microbiol. 1984, 130, 1409-1418.
78. Gormon, T., Phan-Thanh, L., Res. Microbiol. 1995, 146, 143-154.
79. Finn, B., Rowe, M., Electrophoresis 1996, 17, 1633-1637.
80. Konkel, M. E., Cieplak, W., Infect. Immun. 1992, 60, 4945-4949.
81. Abshire, K. Z., Neidhardt, F. C., J. Bacteriol. 1993, 175, 3734-3743.
82. Boyce, J. D., Cullen, P. A., Nguyen, V., Wilkie, I., Adler, B., Proteomics 2006, 6, 870-880.
83. Twine, S. M., Mykytczuk, N. C., Petit, M. D., Shen, H., Sjostedt, A., Wayne Conlan, J., Kelly, J. F., Biochem. Biophys. Res. Commun. 2006, 345, 1621-1633.
84. Hughes, V., Smith, S., Garcia-Sanchez, A., Sales, J., Stevenson, K., Microbiology 2007, 153, 196-205.
85. Hooper, L. V., Curr. Opin. Microbiol. 2004, 7, 290-295.