Microsatellite variation reveals fine-scale genetic structure of masu salmon, Oncorhynchus masou, within the Atsuta River

Ecology of Freshwater Fish

Volumn 18, Issue 1, 2009, Pages 65-71

  Kitanishi, S ^a   Yamamoto, T ^b   Higashi, S ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b NIPPON VETERINARY AND LIFE SCIENCE UNIVERSITY   (Japan)

Author keywords

Anadromous; Genetic structure; Masu salmon; Microsatellite; Within river

Indexed keywords

ANIMALIA; ONCORHYNCHUS; ONCORHYNCHUS MASOU;

EID: 69249091026     PISSN: 09066691     EISSN: 16000633     Source Type: Journal    
DOI: 10.1111/j.1600-0633.2008.00325.x     Document Type: Article

References (43)

1. Benjamini, B.Y. Yekutieli, D. 2001. The control of the false discovery rate in multiple testing under dependency. The Annals of Statistics 29 : 1165 1188.
2. Bouza, C., Arias, J., Castro, J., Sánchez, L. Martínez, P. 1999. Genetic structure of brown trout, Salmo trutta L., at the southern limit of the distribution range of the anadromous form. Molecular Ecology 8 : 1991 2001.
3. Burgner, R.L. 1991. Life history of sockeye salmon (Oncorhynchus nerka). In : Groot, C. Margolis, L., eds. Pacific salmon life histories, Vancouver : UBC Press, pp. 1 117.
4. Caputo, V., Giovannotti, M., Nisi Cerioni, P., Caniglia, M.L. Splendiani, A. 2004. Genetic diversity of brown trout in central Italy. Journal of Fish Biology 65 : 403 418.
5. Castric, V., Bonney, F. Bernatchez, L. 2001. Landscape structure and hierarchical genetic diversity in the brook charr, Salvelinus fontinalis. Evolution 55 : 1016 1028.
6. DeWoody, J.A. Avise, J.C. 2000. Microsatellite variation in marine, freshwater and anadromous fishes compared with other animals. Journal of Fish Biology 56 : 461 473.
7. Dionne, M., Caron, F., Dodson, J.J. Bernatchez, L. 2008. Landscape genetics and hierarchical genetic structure in Atlantic salmon: the interaction of gene flow and local adaptation. Molecular Ecology 17 : 2382 2396.
8. El Mousadik, A. Petit, R.J. 1996. High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L.) Skeels] endemic to Morocco. Theoretical and Applied Genetics 92 : 832 839.
9. Garant, D., Dodson, J.J. Bernatchez, L. 2000. Ecological determinants and temporal stability of the within-river population structure in Atlantic salmon (Salmo salar L.). Molecular Ecology 9 : 615 628.
10. Goudet, J. 1999. PCAGEN. Principal components analysis of gene frequency data (version 1.2). Lausanne : Population Genetics Laboratory, University of Lausanne.
11. Goudet, J. 2001. fstat, a program to estimate and test gene diversities and fixation indices (version 2.9.3). Lausanne : Population Genetics Laboratory, University of Lausanne.
12. Hansen, M.M. Mensberg, K.-L.D. 1998. Genetic differentiation and relationship between genetic and geographical distance in Danish sea trout (Salmo trutta L.) populations. Heredity 81 : 493 504.
13. Hansen, M.M., Nielsen, E.E. Mensberg, K.-L.D. 1997. The problem of sampling families rather than populations: relatedness among individuals in samples of juvenile brown trout Salmo trutta L. Molecular Ecology 6 : 469 474.
14. Hawkins, S.L., Varnavskaya, N.V., Matzak, E.A., Efremov, V.V., Guthrie, C.M. III, Wilmot, R.L., Mayama, H., Yamazaki, F. Gharrett, A.J. 2002. Population structure of odd-broodline Asian pink salmon and its contrast to the even-broodline structure. Journal of Fish Biology 60 : 370 388.
15. Hendry, A.P., Castric, V., Kinnison, M.T. Quinn, T.P. 2004. The evolution of philopatry and dispersal. In : Hendry, A.P. Stearns, S.C., eds. Evolution illuminated, New York : Oxford University Press, pp. 52 91.
16. Kato, F. 1991. Life histories of masu and amago salmon (Oncorhynchus masou and Oncorhynchus rhodurus). In : Groot, C. Margolis, L., eds. Pacific salmon life histories, Vancouver : UBC Press, pp. 447 520.
17. Kawamura, K., Kubota, M., Furukawa, M. Harada, Y. 2007. The genetic structure of endangered indigenous populations of the amago salmon, Oncorhynchus masou ishikawae, in Japan. Conservation Genetics 8 : 1163 1176.
18. King, T.L., Kalinowski, S.T., Schill, W.B., Spidle, A.P. Lubinski, B.A. 2001. Population structure of Atlantic salmon (Salmo salar L.): a range-wide perspective from microsatellite DNA variation. Molecular Ecology 10 : 807 821.
19. Kitanishi, S., Edo, K., Yamamoto, T., Azuma, N., Hasegawa, O. Higashi, S. 2007. Genetic structure of masu salmon (Oncorhynchus masou) populations in Hokkaido, northernmost Japan, inferred from mitochondrial DNA variation. Journal of Fish Biology 71 (Suppl. C 437 452.
20. Morán, P., Pendás, A.M., García-Vázquez, E., Izquierdo, J.I. Lobón-Cerviá, J. 1995. Estimates of gene flow among neighbouring populations of brown trout. Journal of Fish Biology 46 : 593 602.
21. Neville, H.M., Isaak, D.J., Dunham, J.B., Thurow, R.F. Rieman, B.E. 2006. Fine-scale natal homing and localized movement as shaped by sex and spawning habitat in Chinook salmon: insights from spatial autocorrelation analysis of individual genotypes. Molecular Ecology 15 : 4589 4602.
22. Neville, H., Isaak, D., Thurow, R., Dunham, J. Rieman, B. 2007. Microsatellite variation reveals weak genetic structure and retention of genetic variability in threatened Chinook salmon (Oncorhynchus tshawytscha) within a Snake River watershed. Conservation Genetics 8 : 133 147.
23. Nielsen, E.E., Hansen, M.M. Loeschcke, V. 1999. Genetic variation in the time and space: microsatellite analysis of extinct and extant populations of Atlantic salmon. Evolution 53 : 261 268.
24. Okazaki, T. 1986. Genetic variation and population structure in masu salmon Oncorhynchus masou of Japan. Bulletin of the Japanese Society of Scientific Fisheries 52 : 1365 1376.
25. Okazaki, T. 1990. Population structure of masu salmon, Oncorhynchus masou, in the species of the genus Oncorhynchus. Bulletin of the Institute of Zoology Academia Sinica 29 (Suppl. 3 17 25.
26. Olsen, J.B., Wilson, S.L., Kretschmer, E.J., Jones, K.C. Seeb, J.E. 2000. Characterization of 14 tetranucleotide microsatellite loci derived from sockeye salmon. Molecular Ecology 9 : 2185 2187.
27. Palti, Y., Fincham, M.R. Rexroad, C.E. III. 2002. Characterization of 38 polymorphic microsatellite markers for rainbow trout (Oncorhynchus mykiss). Molecular Ecology Notes 2 : 449 452.
28. Primmer, C.R., Veselov, A.J., Zubchenko, A., Poututkin, A., Bakhmet, I. Koskinen, M.T. 2006. Isolation by distance within a river system: genetic population structuring of Atlantic salmon, Salmo salar, in tributaries of the Varzuga River in northwest Russia. Molecular Ecology 15 : 653 666.
29. Quinn, T.P. 1993. A review of homing and straying of wild and hatchery-produced salmon. Fisheries Research 18 : 29 44.
30. Raymond, M. Rousset, F. 1995. genepop (version 1.2): population genetics software for exact tests and ecumenicism. Journal of Heredity 86 : 248 249.
31. Rodriguez, F., Rexroad, C.E. III Palti, Y. 2003. Characterization of twenty-four microsatellite markers for rainbow trout (Oncorhynchus mykiss). Molecular Ecology Notes 3 : 619 622. (Pubitemid 37496774)
32. Rousset, F. 1997. Genetic differentiation and estimation of gene flow from F-statistics under isolation by distance. Genetics 145 : 1219 1228.
33. Schneider, S., Roessli, D. Excoffier, L. 2000. arlequin, version 2.000: A software for population genetics data analysis. Geneva : Genetics and Biometry Laboratory, University of Geneva.
34. Spidle, A.P., Bane Schill, W., Lubinski, B.A. King, T.L. 2001. Fine-scale population structure in Atlantic salmon from Maine's Penobscot River drainage. Conservation Genetics 2 : 11 24.
35. Stearns, S.C. Hendry, A.P. 2004. Introduction. In : Hendry, A.P. Stearns, S.C., eds. Evolution illuminated. New York : Oxford University Press, pp. 3 19.
36. Sugiwaka, K., Takeuchi, K., Suzuki, K.T., Nagata, M., Miyamoto, M. Kawamula, H. 1999. Distribution and structure of spawning redds of masu salmon in the Atsuta River. Scientific Report of the Hokkaido Fish Hatchery 53 : 11 28 (in Japanese with English summary).
37. Suzuki, K.T., Kobayashi, T., Matsuishi, T. Numachi, K. 2000. Genetic variability of masu salmon in Hokkaido, by Restriction Fragment Length Polymorphism analysis of mitochondrial DNA. Nippon Suisan Gakkaishi 66 : 639 646 (in Japanese with English summary).
38. Taylor, E.B. 1991. A review of local adaptation in Salmonidae, with particular reference to Pacific and Atlantic salmon. Aquaculture 98 : 185 207.
39. Tonteri, A., Veselov, A.Je., Titov, S., Lumme, J. Primmer, C.R. 2007. The effect of migratory behaviour on genetic diversity and population divergence: a comparison of anadromous and freshwater Atlantic salmon Salmo salar. Journal of Fish Biology 70 (Suppl. C 381 398.
40. Utter, F. 2001. Patterns of subspecific anthropogenic introgression in two salmonid genera. Reviews in Fish Biology and Fisheries 10 : 265 279.
41. Vähä, J.-P., Erkinaro, J., Niemelä, E. Primmer, C.R. 2007. Life-history and habitat features influence the within-river genetic structure of Atlantic salmon. Molecular Ecology 16 : 2638 2654.
42. Weir, B.S. Cockerham, C.C. 1984. Estimating F-statistics for the analysis of population structure. Evolution 38 : 1358 1370.
43. Yamamoto, S., Morita, K., Koizumi, I. Maekawa, K. 2004. Genetic differentiation of white-spotted charr (Salvelinus leucomaenis) populations after habitat fragmentation: spatial-temporal changes in gene frequencies. Conservation Genetics 5 : 529 538.