The youngest split in sympatric schizothoracine fish (Cyprinidae) is shaped by ecological adaptations in a Tibetan Plateau glacier lake

Molecular Ecology

Volumn 18, Issue 17, 2009, Pages 3616-3628

  Zhao, Kai ^a   Duan, Zi Yuan ^b,c   Peng, Zuo Gang ^b,d   Guo, Song Chang ^a   Li, Jun Bing ^b   He, Shun Ping ^b   Zhao, Xin Quan ^a  

^a NORTHWEST INSTITUTE OF PLATEAU BIOLOGY   (China)

^b INSTITUTE OF HYDROBIOLOGY   (China)

^c INSTITUTE OF GENETICS AND DEVELOPMENTAL BIOLOGY   (China)

^d GEORGIA INSTITUTE OF TECHNOLOGY   (United States)

Author keywords

Mitochondrial control region and cytochrome b; Phylogeography; Pleistocene glaciations; Schizothoracine fish; Tibetan Plateau

Indexed keywords

CYTOCHROME B; MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; CHINA; CLASSIFICATION; CYPRINIFORMES; DNA SEQUENCE; ECOSYSTEM; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; POPULATION GENETICS; SPECIES DIFFERENCE; SPECIES DIFFERENTIATION;

ANIMALS; CYPRINIDAE; CYTOCHROMES B; DNA, MITOCHONDRIAL; ECOSYSTEM; EVOLUTION, MOLECULAR; GENETIC SPECIATION; GENETICS, POPULATION; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SPECIES SPECIFICITY; TIBET;

CYPRINIDAE; CYPRINIFORMES; GYMNOCYPRIS; GYMNOCYPRIS ECKLONI;

EID: 69049107569     PISSN: 09621083     EISSN: 1365294X     Source Type: Journal    
DOI: 10.1111/j.1365-294X.2009.04274.x     Document Type: Article

References (62)

1. Bandelt HJ, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Molecular Biology and Evolution, 16, 37 48.
2. Barluenga M, Meyer A (2004) The Midas cichlid species complex: incipient sympatric speciation in Nicaraguan cichlid fishes? Molecular Ecology, 13, 2061 2076.
3. Barluenga M, Meyer A (2008) Old fish in a young lake: stone loach (Pisces: Barbatula barbatula) populations in Lake Constance are genetically isolated by distance. Molecular Ecology, 14, 1229 1239.
4. Barluenga M, Stölting KN, Salzburger W, Muschick M, Meyer A (2006) Sympatric speciation in Nicaraguan crater lake cichlids. Nature, 439, 719 723.
5. Behrmann-Godel J, Gerlach G, Eckmann R (2004) Postglacial colonization shows evidence for sympatric population splitting of Eurasian perch (Perca fluviatilis L.) in Lake Constance. Molecular Ecology, 13, 491 497.
6. Bolnick DI, Fitzpatrick BM (2007) Sympatric Speciation: Models and Empirical Evidence. Annual Review of Ecology, Evolution, and Systematics, 38, 459 487.
7. Cao WX, Chen YY, Wu YF, Zhu SQ (1981) Origin and evolution of schizothoracine fishes in relation to the upheaval of the Xizang Plateau. In : Studies on the Period, Amplitude and Type of the Uplift of the Qinghai-Xizang Plateau (eds Tibetan Expedition of the Chinese Academy of Science pp. 118 130. Science Press, Beijing.
8. Chen ZM (1988) A preliminary analysis of paleo-limnology and its environment at the upper reaches of the Huanghe river. Proceedings of the Third Chinese Oceanological and Limnological Science Conference (eds Chinese Society of Oceanology and Limnology pp. 244 253. Science Press, Beijing.
9. Chen YF, Cao WX (2000) Schizothoracinae. In : Fauna Sinica, Osteichthyes, Cypriniformes II (ed. Yue P pp. 273 335. Science Press, Beijing, China.
10. Chen YY, Zhang W, Huang SY (1982) Speciation in schizothoracid fishes of Lake Lugu. Acta Zoologica sinica, 28, 217 225.
11. Coyne JA, Orr HA (2004) Speciation. Sinauer, Sunderland, Massachusetts, 545 pp.
12. Crispo E, Chapman LJ (2008) Population genetic structure across dissolved oxygen regimes in an African cichlid fish. Molecular Ecology, 17, 2134 2148.
13. Drummond AJ, Rambaut A (2007) beast: Bayesian evolutionary analysis by sampling trees. BMC Evolutionary Biology, 7, 214.
14. Drummond AJ, Rambaut A, Shapiro B, Pybus OG (2005) Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences. Molecular Biology and Evolution, 22, 1185 1192.
15. Drummond AJ, Ho S, Phillips M, Rambaut A (2006) Relaxed phylogenetics and dating with confidence. PLoS Biology, 4, e88.
16. Duftner N, Sefc KM, Koblmüller S et al. (2006) Distinct population structure in a phenotypically homogeneous rock-dwelling cichlid fish from Lake Tanganyika. Molecular Ecology, 15, 2381 2395.
17. Elderkin C, Christian AD, Metcalfe-Smith JL, Berg DJ (2008) Population genetics and phylogeography of freshwater mussels in North America, Elliptio dilatata and Actinonaias ligamentina (Bivalvia: Unionidae). Molecular Ecology, 17, 2149 2163.
18. Finston LI, Johnson MS, Humphreys WF, Eberhard SM, Halse SA (2007) Cryptic speciation in two widespread subterranean amphipod genera reflects historical drainage patterns in an ancient landscape. Molecular Ecology, 16, 355 365.
19. Gavrilets S, Vose A, Barluenga M, Salzburger W, Meyer A (2007) Case studies and mathematical models of ecological speciation. 1. Cichlids in a crater lake. Molecular Ecology, 16, 2893 2909. (Pubitemid 47035461)
20. Gislason D, Ferguson MM, Skulason S, Snorrason SS (1999) Rapid and coupled phenotypic and genetic divergence in Icelandic arctic char (Salvelinus alpinus). Canadian Journal of Fisheries and Aquatic Sciences, 56, 2229 2234.
21. He DK, Chen YF (2006) Biogeography and molecular phylogeny of the genus Schizothorax (Teleostei: Cyprinidae) in China inferred from cytochrome b sequences. Journal of Biogeography, 33, 1148 1460.
22. Herder F, Pfaender J, Schliewen UK (2008) Adaptive sympatric speciation of polychromatic "roundfin" sailfin silverside fish in Lake Matano (Sulawesi). Evolution, 62, 2178 2195.
23. Huang S, He SP, Peng ZG, Zhao K, Zhao EM (2007) Molecular phylogeography of endangered sharp-snouted pitviper (Deinagkistrodon acutus; Reptilia, Viperidae) in Mainland China. Molecular Phylogenetics and Evolution, 44, 942 952.
24. Jin YT, Brown RP, Liu NF (2008) Cladogenesis and phylogeography of the lizard Phrynocephalus vlangalii (Agamidae) on the Tibetan plateau. Molecular Ecology, 17, 1971 1982.
25. Johannesson K (2001) Parallel speciation: a key to sympatric divergence. Trends in Ecology and Evolution, 16, 148 153.
26. Kumar S, Tamura K, Nei M (2004) mega3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics, 5, 150 163.
27. Lei YB, Zhang HC, Shang HM, Yang LQ, Lei GL, Zhang WX (2008) Lake evolution and glaciation of the nianbaoyuze mountain in the Tibetan Plateau since the middle of the last glacial. Quaternary Sciences, 28, 132 139.
28. Li SC, Chang SY (1974) Two new species and one new subspecies of fishes from the northern part of Kansu Province, China. Acta Zoologica Sinica, 20, 414 419.
29. Li JJ, Fang XM, Pan BT, Zhao ZJ, Song YG (2001) Late Cenozoci intensive uplift of Qinghai-Xizang Plateau and its impacts on environments in surrounding area. Quaternary Sciences, 21, 381 391.
30. Mirza MR (1991) A contribution to the systematics of the Schizothoracine fishes (Pisces: Cyprinidae) with the description of three new tribes. Pakistan Journal of Zoology, 23, 339 341.
31. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York.
32. Nei M, Tajima F (1981) DNA polymorphism detectable by restriction endonucleases. Genetics, 97, 145 163.
33. Posada D, Crandall KA (1998) modeltest: testing the model of DNA substitution. Bioinformatics, 14, 817 818.
34. Reed LK, Nyboer M, Markow TA (2007) Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae. Molecular Ecology, 16, 1007 1022.
35. Reynolds J, Weir BS, Cockerham CC (1983) Estimating coancestry coefficient: basis for a short-term genetic distance. Genetics, 105, 767 779.
36. Rogers AR, Harpending H (1992) Population growth makes waves in the distribution of pairwise genetic divergences. Molecular Biology and Evolution, 9, 552 569.
37. Ronquist F, Huelsenbeck JP (2003) mrbayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19, 1572 1574.
38. Ruzzante DE, Walde SJ, Gosse JC et al. (2008) Climate control on ancestral population dynamics: insight from Patagonian fish phylogeography. Molecular Ecology, 17, 2234 2244.
39. Saitoh K, Sado T, Mayden RL et al. (2006) Mitogenomic evolution and interrelationships of the Cypriniformes (Actinopterygii: Ostariophysi): the first evidence toward resolution of higher-level relationships of the world's largest freshwater fish clade based on 59 whole mitogenome sequences. Journal of Molecular Evolution, 63, 826 841.
40. Sambrook J, Fritsch EF, Maniatis T (1989) Molecular Cloning: A Laboratory Manual, 2nd edn. Cold Spring Harbor Laboratory Press, New York.
41. Schliewen UK, Klee B (2004) Reticulate sympatric speciation in Cameroonian crater lake cichlids. Frontiers in zoology, 1, 1 12.
42. Schliewen UK, Tautz D, Paabo S (1994) Sympatric speciation suggested by monophyly of crater lake cichlids. Nature, 368, 629 632.
43. Schliewen U, Rassmann K, Markmann M, Markert J, Kocher T, Tautz D (2001) Genetic and ecological divergence of a monophyletic cichlid species pair under fully sympatric conditions in Lake Ejagham, Cameroon. Molecular Ecology, 10, 1471 1488.
44. Schneider S, Roessli D, Excoffier L (2000) arlequin: A Software Package for Population Genetics Data Analysis, Version 2000. Genetics and Biometry Laboratory, Department of Anthropology, University of Geneva, Geneva, Switzerland.
45. Seehausen O, Koetsier E, Schneider MV (2003) Nuclear markers reveal unexpected genetic variation and Congolese-Nilotic origin of the Lake Victoria cichlid species flock. Proceedings of the Royal Society of London Series B, 270, 129 137.
46. Slatkin M (1995) A measure of population subdivision based on microsatellite allele frequencies. Genetics, 139, 457 462.
47. Sun HL (1996) Formation and Evolution of Qinghai-Xizang Plateau. Shanghai Science Press, Shanghai, China.
48. Swofford DL (2002) paup*. Phylogenetic Analysis Using Parsimony (*and other methods), Version 4.0b10. Sinauer Associates, Sunderland, Massachusetts.
49. Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG (1997) The clustalx windows interface: flexible startegies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25, 4876 4882.
50. Tsao WS, Wu HW (1962) An investigation of the fish biology and fishery problems in Ganze-Apa region of western Szechwan province. Acta Hydrobiologica Sinica, 2, 79 110.
51. Verheyen E, Salzburger W, Snoeks J, Meyer A (2003) Origin of the superflock of cichlid fishes from lake Victoria, East Africa. Science, 300, 325 329.
52. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution, 38, 1358 1370.
53. Wu YF, Chen Y (1979) The fishes in Guoluo and Yushu region of Qinghai province. Acta Zootaxonomic Sinica, 4, 287 296.
54. Wu YF, Tan QJ (1991) Characteristics of the fish-fauna of the characteristics of Qinghai-Xizang Plateau and its geological distribution and formation. Acta Zoologica Sinica, 37, 135 152.
55. Wu YF, Wu CZ (1984) Notes on fishes from Lake Sunmcuo of Qinghai Province, China. Acta Zootaxonomica Sinica, 1984, 9, 326 329.
56. Wu YF, Wu CZ (1992) The fishes of the Qinghai-Xizang Plateau. Sichuan Publishing House of Science & Technology, Chendu, China.
57. Xiao WH, Zhang YP, Liu HZ (2001) Molecular systematics of Xenocyprinae (Teleostei: Cyprinidae): Taxonomy, biogeography, and coevolution of a special group restricted in East Asia. Molecular Phylogenetics and Evolution, 18, 163 173.
58. Zardoya R, Doadrio I (1999) Molecular evidence on the evolutionary and biogeographical patterns of European cyprinids. Journal of Molecular Evolution, 49, 227 237.
59. Zhang ZY, Yu QW, Zhang KX, Gu YS, Xing SY (2003) Geomorphological evolution of Quaternary River from upper Yellow River and geomorphological evolution investigation for 1:250000 scale geological mapping in Qinghai-Tibet plateau. Earth Science-Journal of China University of Geosciences, 28, 621 633.
60. Zhao TQ (1986) On the taxonomic problem of Gymnocpris eckloni Herzenstein. La Animala Mondo, 3, 49 55.
61. Zhao K, Li JB, Yang GS, Duan ZY, He SP, Chen YY (2005) Molecular phylogenetics of Gymnocypris (Teleostei: Cyprinidae) in Lake Qinghai and adjacent drainages. Chinese Science Bulletin, 50, 1325 1333.
62. Zhu SQ, Wu YF (1975) Studies on the ichthyofauna of Lake Qinghai. In : Ichthyofauna of Lake Qinghai and Biology of Gymnoypris przewalskii (Cyprinidae) (eds Qinghai Institute of Biology pp. 9 26. Science Press, Beijing.