Frameshift detection in prokaryotic genomic sequences

International Journal of Bioinformatics Research and Applications

Volumn 5, Issue 4, 2009, Pages 458-477

  Kislyuk, Andrey ^a   Lomsadze, Alexandre ^b   Lapidus, Alla L ^c   Borodovsky, Mark ^a,d  

^a GA Institute of Technology   (United States)

^b Georgia Institute of Technology   (United States)

^c DOE JOINT GENOME INSTITUTE   (United States)

^d Emory University   (United States)

Author keywords

Frameshift; Genomics; Hidden Markov model; HMM; Machine learning; Markov chains; Pyrosequencing; Sensitivity; Sn; Sp; Specificity

Indexed keywords

PROTEIN;

AB INITIO CALCULATION; ACCURACY; ALGORITHM; ANALYTICAL ERROR; ARTICLE; GENE SEQUENCE; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; PROKARYOTE; PYROSEQUENCING; RIBOSOMAL FRAMESHIFTING; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS;

PROKARYOTA;

EID: 68949217682     PISSN: 17445485     EISSN: 17445493     Source Type: Journal    
DOI: 10.1504/IJBRA.2009.027519     Document Type: Article

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