Deletion of host histone acetyltransferases and deacetylases strongly affects Agrobacterium-mediated transformation of Saccharomyces cerevisiae

FEMS Microbiology Letters

Volumn 298, Issue 2, 2009, Pages 228-233

  Soltani, Jalal ^a   Van Heusden, Gerard Paul H ^a   Hooykaas, Paul J J ^a  

^a LEIDEN UNIVERSITY   (Netherlands)

Author keywords

Agrobacterium; Histone acetyltransferase; Histone deacetylase; Saccharomyces cerevisiae; Transformation

Indexed keywords

HISTONE ACETYLTRANSFERASE; HISTONE ACETYLTRANSFERASE GCN5; HISTONE DEACETYLASE; HISTONE DEACETYLASE 2; HISTONE DEACETYLASE 3; HISTONE DEACETYLASE HST4; LITHIUM ACETATE; TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR ADA; TRANSCRIPTION FACTOR EAF7; TRANSCRIPTION FACTOR NGG1; TRANSCRIPTION FACTOR NUA4; TRANSCRIPTION FACTOR SAGA; TRANSCRIPTION FACTOR SLIK; UNCLASSIFIED DRUG;

ANIMAL EXPERIMENT; ARTICLE; BACTERIAL STRAIN; ENZYME ACTIVITY; ENZYME SUBUNIT; FUNGAL STRAIN; GENE DELETION; GENE EXPRESSION; GENE IDENTIFICATION; GENETIC TRANSFORMATION; NONHUMAN; PRIORITY JOURNAL; PROTEIN FUNCTION; PROTEIN STRUCTURE; RHIZOBIUM; SACCHAROMYCES CEREVISIAE;

GENES, FUNGAL; HISTONE ACETYLTRANSFERASES; HISTONE DEACETYLASES; RHIZOBIUM RADIOBACTER; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE DELETION; TRANSFORMATION, GENETIC;

AGROBACTERIUM; AGROBACTERIUM TUMEFACIENS; SACCHAROMYCES CEREVISIAE;

EID: 68949217200     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01723.x     Document Type: Article

References (27)

1. Brachmann CB, Sherman JM, Devine SE, Cameron EE, Pillus L Boeke JD (1995) The SIR2 gene family, conserved from bacteria to humans, functions in silencing, cell cycle progression, and chromosome stability. Genes Dev 9 : 2888 2902.
2. Bundock P, Dulk-Ras A, Beijersbergen A Hooykaas PJJ (1995) Trans-kingdom T-DNA transfer from Agrobacterium tumefaciens to Saccharomyces cerevisiae. EMBO J 14 : 3206 3214.
3. Crane YM Gelvin SB (2007) RNAi-mediated gene silencing reveals involvement of Arabidopsis chromatin-related genes in Agrobacterium-mediated root transformation. P Natl Acad Sci USA 104 : 15156 15161.
4. Giaever G, Chu AM, Ni L et al 2002) Functional profiling of the Saccharomyces cerevisiae genome. Nature 418 : 387 391.
5. Gietz RD Sugino A (1988) New yeast-Escherichia coli shuttle vectors constructed with in vitro mutagenized yeast genes lacking six-base pair restriction sites. Gene 74 : 527 534.
6. Gietz RD, Schiestl RH, Willems AR Woods RA (1995) Studies on the transformation of intact yeast cells by the LiAc/SS-DNA/PEG procedure. Yeast 11 : 355 360.
7. Griffith JL, Coleman LE, Raymond AS, Goodson SG, Pittard WS, Tsui C Devine SE (2003) Functional genomics reveals relationships between the retrovirus-like Ty1 element and its host Saccharomyces cerevisiae. Genetics 164 : 867 879.
8. Holstege FC, Jennings EG, Wyrick JJ, Lee TI, Hengartner CJ, Green MR, Golub TR, Lander ES Young RA (1998) Dissecting the regulatory circuitry of a eukaryotic genome. Cell 95 : 717 728.
9. Hooykaas PJJ, Dulk-Ras A, Bundock P, Soltani J, van Attikum A van Heusden GPH (2006) Agrobacterium Protocols: transformation of Yeast (Saccharomyces cerevisiae). Methods in Molecular Biology (Wang K., ed), pp. 465 473. Humana Press, Totowa, NJ.
10. Krogan NJ, Baetz K, Keogh MC et al 2006) Regulation of chromosome stability by the histone H2A variant Htz1, the Swr1 chromatin remodeling complex, and the histone acetyltransferase NuA4. P Natl Acad Sci USA 101 : 13513 13518.
11. Lacroix B, Loyter A Citovsky V (2008) Association of the Agrobacterium T-DNA-protein complex with plant nucleosomes. P Natl Acad Sci USA 105 : 15429 15434.
12. McCullen CA Binns AN (2006) Agrobacterium tumefaciens and plant cell interactions and activities required for interkingdom macromolecular transfer. Annu Rev Cell Dev Bi 22 : 101 127.
13. Nagy Z Tora L (2007) Distinct GCN5/PCAF-containing complexes function as co-activators and are involved in transcription factor and global histone acetylation. Oncogene 26 : 5341 5357.
14. Piers KL, Heath JD, Liang X, Stephens KM Nester EW (1996) Agrobacterium tumefaciens mediated transformation of yeast. P Natl Acad Sci USA 93 : 1613 1618.
15. Roberts RL, Metz M, Monks DE, Lockwood Mullaney M, Hall T Nester EW (2003) Purine synthesis and increased Agrobacterium tumefaciens transformation of yeast and plants. P Natl Acad Sci USA 100 : 6634 6639.
16. Schrammeijer B, den Dulk-Ras A, Vergunst AC, Jurado Jacome E Hooykaas PJJ (2003) Analysis of Vir protein translocation from Agrobacterium tumefaciens using Saccharomyces cerevisiae as a model: evidence for transport of a novel effector protein VirE3. Nucleic Acids Res 31 : 860 868.
17. Soltani J, van Heusden GPH Hooykaas PJJ (2008) Agrobacterium-mediated transformation of non-plant organisms. Agrobacterium: From Biology to Biotechnology (Tzfira T Citovsky V, eds), pp. 649 675. Springer Press, New York.
18. Steensma HY, Holterman L, Dekker I, van Sluis CA Wenzel TJ (1990) Molecular cloning of the gene for the E1 alpha subunit of the pyruvate dehydrogenase complex from Saccharomyces cerevisiae. Eur J Biochem 191 : 769 774.
19. Tzfira T, Li J, Lacroix B Citovsky V (2004) Agrobacterium T-DNA integration: molecules and models. Trends Genet 20 : 375 383.
20. van Attikum A Gasser SM (2005) The histone code at DNA breaks: a guide to repair? Nat Rev Mol Cell Bio 6 : 757 765.
21. van Attikum A, Bundock P Hooykaas PJJ (2001) Non-homologous end-joining proteins are required for Agrobacterium T-DNA integration. EMBO J 20 : 6550 6558.
22. Vergunst AC, Schrammeijer B, den Dulk A, de Vlaam CMT, Regensburg-Tuink AJ Hooykaas PJJ (2000) VirB/D4-dependent protein translocation from Agrobacterium into plant cells. Science 290 : 979 982.
23. Wu J, Carmen AA, Kobayashi R, Suka N Grunstein M (2001) Hda2 and Hda3 are related proteins that interact with and are essential for the activity of the yeast histone deacetylase Hda1. P Natl Acad Sci USA 98 : 4391 4396.
24. Zhang H, Richardson DO, Roberts DN, Utley R, Erdjument-Bromage H, Tempst P, Cote J Cairns BR (2004) The Yaf9 component of the SWR1 and NuA4 complexes is required for proper gene expression, histone H4 acetylation, and Htz1 replacement near telomeres. Mol Cell Biol 24 : 9424 9436.
25. Zhang W, Bone JR, Edmondson DG, Turner BM Roth SY (1998) Essential and redundant functions of histone acetylation revealed by mutation of target lysines and loss of the Gcn5p acetyltransferase. EMBO J 17 : 3155 3167.
26. Zhu Y, Nam J, Humara JM et al 2003) Identification of Arabidopsis rat mutants. Plant Physiol 132 : 494 505.
27. Zonneveld BJM (1986) Cheap and simple yeast media. J Microbiol Meth 4 : 287 291.