Entropy decrease associated to solute compartmentalization in the cell

BioSystems

Volumn 98, Issue 1, 2009, Pages 31-36

  Marín, Dolores ^a   Martín, Mercedes ^a   Sabater, Bartolomé ^a  

^a UNIVERSITY OF ALCALÁ   (Spain)

Author keywords

Complexity; Evolution; Life; Organelles; Saccharomyces; Self organization; Thermodynamics

Indexed keywords

DNA; PROTEIN;

CELL ORGANELLE; COMPARTMENTALIZATION; DNA; ENTROPY; ESTIMATION METHOD; EUKARYOTE; SELF ORGANIZATION;

ARTICLE; CELL COMPARTMENTALIZATION; CELL FUNCTION; CHLAMYDOMONAS REINHARDTII; CYTOSOL; ENTROPY; ESCHERICHIA COLI; EUKARYOTE; MATHEMATICAL ANALYSIS; MITOCHONDRION; NONHUMAN; SACCHAROMYCES CEREVISIAE; SOLUTE; THERMODYNAMICS;

CHLAMYDOMONAS REINHARDTII; EUKARYOTA; SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 68949170689     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2009.07.001     Document Type: Article

References (36)

1. Adami C., Ofria C., and Collier T.C. Evolution of biological complexity. Proc. Natl. Acad. Sci. U.S.A. 97 (2000) 4463-4468
2. Annilaa A., and Kuismanenc E. Natural hierarchy emerges from energy dispersal. BioSystems 95 (2009) 227-233
3. Baldauf S.L. The deep roots of eukaryotes. Science 300 (2003) 1703-1706
4. Battley E.H. Calculation of entropy change accompanying growth of Escherichia coli K-12 on succinic acid. Biotechnol. Bioeng. 41 (1993) 422-428
5. Beard D.A., Liang S., and Olan H. Energy balance for analysis of complex metabolic networks. Biophys. J. 83 (2002) 79-86
6. Briedis D., and Seagrave R.C. Energy transformation and entropy production in living systems. I. Applications to embryonic growth. J. Theor. Biol. 110 (1984) 173-193
7. Costa M., Goldberger A.L., and Peng C.-K. Multiscale entropy analysis of biological signals. Phys. Rev. E 71 (2005) 021906
8. Creamer, T.P., 2001. Conformational entropy in protein folding. In: Murphy, K.P. (Ed.), Methods in Molecular Biology, vol. 168: Protein Structure, Stability, and Folding. Humana Press Inc., Totowa, NJ, pp. 117-132.
9. Database CCDB. Eschericchia coli Statistics. Institute for Biomolecular Design. http://redpoll.pharmacy.ualberta.ca/CCDB/cgi-in/STAT_New.cgi (accessed October 2008).
10. Emmeche C. Aspects of complexity in life and science. Philosophica 59 (1997) 41-68
11. Halley J.D., and Winkler D.A. Critical-like self-organization and natural selection: two facets of a single evolutionary process?. BioSystems 92 (2008) 148-158
12. Harano Y., and Kinoshita M. Translational-entropy gain of solvent upon protein folding. Biophys. J. 89 (2005) 2701-2710
13. Hayflick L. Entropy explains aging, genetic determinism explains longevity, and undefined terminology explains misunderstanding both. PLoS Genet. 3 (2007) e220
14. Jimenez-Montano M.A., Ebeling W., Pohl T., and Rapp P.E. Entropy and complexity of finite sequences as fluctuating quantities. BioSystems 64 (2002) 23-32
15. Ksenzhek O.S., and Volkov A.G. Plant Energetics (1998), Academic Press, New York pp. 276-278
16. Kurland C.G., Collins L.J., and Penny D. Genomics and the irreducible nature of eukaryotic cells. Science 312 (2006) 1011-1014
17. Liao H., Yeh W., Chiang D., and Jernigan R.L. Protein sequence entropy is closely related to packing density and hydrophobicity. Protein Eng. Des. Select. 18 (2005) 59-64
18. Makhatadze G.I., and Privalov P.L. On the entropy of protein folding. Protein Sci. 5 (1996) 507-510
19. Marenduzzo D., Micheletti C., and Cook P.R. Entropy-driven genome organization. Biophys. J. 90 (2006) 3712-3721
20. Nakajima T., Sano A., and Matsuoka I. Auto-/heterotrophic endosymbiosis evolves in a mature stage of ecosystem development in a microcosm composed of an alga, a bacterium and a ciliate. BioSystems 96 (2009) 127-135
21. Penzlin H. The riddle of life, a biologist's critical view. Naturwissenschaften 96 (2009) 1-23
22. Pulselli R.M., Simoncini E., and Tiezzi E. Self-organization in dissipative structures: a thermodynamic theory for the emergence of prebiotic cells and their epigenetic evolution. BioSystems 96 (2009) 237-241
23. Rajapakse I., Perlman M.D., Scalzo D., Kooperberg C., Groudine M., and Kosak S.T. The emergence of lineage-specific chromosomal topologies from coordinate gene regulation. Proc. Natl. Acad. Sci. U.S.A. 106 (2009) 6679-6684
24. Ryan J.P. Aspects of the Clausius-Shannon identity: emphasis on the components of transitive information in linear, branched and composite physical systems. Bull. Math. Biol. 37 (1975) 223-254
25. Sabater B. Are organisms committed to lower their rates of entropy production? Possible relevance to evolution of the Prigogine theorem and the ergodic hypothesis. BioSystems 83 (2006) 10-17
26. Schrödinger E. What is Life? The Physical Aspect of a Living Cell (1944), Cambridge University Press, Cambridge
27. Shannon C.E. A mathematical theory of communication. Bell Syst. Technol. J. 27 (1948) 623-656
28. Silva C., and Annamalai K. Entropy generation and human aging: lifespan entropy and effect of physical activity level. Entropy 10 (2008) 100-123
29. Sousa T., Mota R., Domingos T., and Kooijman S.A.L.M. Thermodynamics of organisms in the context of dynamic energy budget theory. Phys. Rev. E 74 (2006) 051901
30. Strait B.J., and Dewey T.G. The Shannon information entropy of protein sequences. Biophys. J. 71 (1996) 148-155
31. Sturtevant J.M. Heat capacity and entropy changes in processes involving proteins. Proc. Natl. Acad. Sci. U.S.A. 74 (1977) 2236-2240
32. Thompson J.B., Hansma H.G., Hansma P.K., and Plazco K.W. The backbone conformational entropy of protein folding: experimental measures from atomic force microscopy. J. Mol. Biol. 322 (2002) 2701-2710
33. Vingaa S., and Almeida J.S. Rényi continuous entropy of DNA sequences. J. Theor. Biol. 231 (2004) 377-388
34. von Stockar U., and Liu J.-S. Does microbial life always feed on negative entropy? Thermodynamic analysis of microbial growth. Biochim. Biophys. Acta 1412 (1999) 191-211
35. Whitesides G.M., and Ismagilov R.F. Complexity in chemistry. Science 284 (1999) 89-92
36. Williams M.C., Wenner J.R., Rouziza I., and Bloomfield V.A. Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching. Biophys. J. 80 (2001) 1932-1939