-
1
-
-
26444567836
-
General stochastic hybrid method for the simulation of chemical reaction processes in cells
-
Bentele M., and Eils R. General stochastic hybrid method for the simulation of chemical reaction processes in cells. Computational Methods in Systems Biology 3082 (2005) 248-251
-
(2005)
Computational Methods in Systems Biology
, vol.3082
, pp. 248-251
-
-
Bentele, M.1
Eils, R.2
-
2
-
-
34547663212
-
Prey selection, vertical migrations and the impacts of harvesting upon the population dynamics of a predator-prey system
-
Edwards H.J., Dytham C., Pitchford J.W., and Righton D. Prey selection, vertical migrations and the impacts of harvesting upon the population dynamics of a predator-prey system. Bulletin of Mathematical Biology 69 (2007) 1827-1846
-
(2007)
Bulletin of Mathematical Biology
, vol.69
, pp. 1827-1846
-
-
Edwards, H.J.1
Dytham, C.2
Pitchford, J.W.3
Righton, D.4
-
3
-
-
0001144902
-
Efficient exact stochastic simulation of chemical systems with many species and many channels
-
Gibson M.A., and Bruck J. Efficient exact stochastic simulation of chemical systems with many species and many channels. Journal of Physical Chemistry A 104 (2000) 1876-1889
-
(2000)
Journal of Physical Chemistry A
, vol.104
, pp. 1876-1889
-
-
Gibson, M.A.1
Bruck, J.2
-
4
-
-
0017030517
-
General method for numerically simulating stochastic time evolution of coupled chemical-reactions
-
Gillespie D.T. General method for numerically simulating stochastic time evolution of coupled chemical-reactions. Journal of Computational Physics 22 (1976) 403-434
-
(1976)
Journal of Computational Physics
, vol.22
, pp. 403-434
-
-
Gillespie, D.T.1
-
5
-
-
33645429016
-
Exact stochastic simulation of coupled chemical-reactions
-
Gillespie D.T. Exact stochastic simulation of coupled chemical-reactions. Journal of Physical Chemistry 81 (1977) 2340-2361
-
(1977)
Journal of Physical Chemistry
, vol.81
, pp. 2340-2361
-
-
Gillespie, D.T.1
-
6
-
-
44049109914
-
A rigorous derivation of the chemical master equation
-
Gillespie D.T. A rigorous derivation of the chemical master equation. Physica A (1992) 404-425
-
(1992)
Physica A
, pp. 404-425
-
-
Gillespie, D.T.1
-
7
-
-
33750970021
-
Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network
-
Griffith M., Courtney T., Peccoud J., and Sanders W.H. Dynamic partitioning for hybrid simulation of the bistable HIV-1 transactivation network. Bioinformatics 22 (2006) 2782-2789
-
(2006)
Bioinformatics
, vol.22
, pp. 2782-2789
-
-
Griffith, M.1
Courtney, T.2
Peccoud, J.3
Sanders, W.H.4
-
8
-
-
0037109565
-
Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics
-
Haseltine E.L., and Rawlings J.B. Approximate simulation of coupled fast and slow reactions for stochastic chemical kinetics. Journal of Chemical Physics 117 (2002) 6959-6969
-
(2002)
Journal of Chemical Physics
, vol.117
, pp. 6959-6969
-
-
Haseltine, E.L.1
Rawlings, J.B.2
-
9
-
-
33845368513
-
COPASI-A COmplex PAthway SImulator
-
Hoops S., Sahle S., Gauges R., Lee C., Pahle J., Simus N., Singhal M., Xu L., Mendes P., and Kummer U. COPASI-A COmplex PAthway SImulator. Bioinformatics 22 (2006) 3067-3074
-
(2006)
Bioinformatics
, vol.22
, pp. 3067-3074
-
-
Hoops, S.1
Sahle, S.2
Gauges, R.3
Lee, C.4
Pahle, J.5
Simus, N.6
Singhal, M.7
Xu, L.8
Mendes, P.9
Kummer, U.10
-
10
-
-
38949164415
-
Algorithms and software for stochastic simulation of biochemical reacting systems
-
Li H., Cao Y., Petzold L.R., and Gillespie D.T. Algorithms and software for stochastic simulation of biochemical reacting systems. Biotechnology Progress 24 (2008) 56-61
-
(2008)
Biotechnology Progress
, vol.24
, pp. 56-61
-
-
Li, H.1
Cao, Y.2
Petzold, L.R.3
Gillespie, D.T.4
-
12
-
-
60849119860
-
Biochemical simulations: stochastic, approximate stochastic and hybrid approaches
-
Pahle J. Biochemical simulations: stochastic, approximate stochastic and hybrid approaches. Briefings in Bioinformatics 10 (2009) 53-64
-
(2009)
Briefings in Bioinformatics
, vol.10
, pp. 53-64
-
-
Pahle, J.1
-
13
-
-
0942279178
-
Stiffness in stochastic chemically reacting systems: the implicit tau-leaping method
-
Rathinam M., Petzold L.R., Cao Y., and Gillespie D.T. Stiffness in stochastic chemically reacting systems: the implicit tau-leaping method. Journal of Chemical Physics 119 (2003) 12784-12794
-
(2003)
Journal of Chemical Physics
, vol.119
, pp. 12784-12794
-
-
Rathinam, M.1
Petzold, L.R.2
Cao, Y.3
Gillespie, D.T.4
-
15
-
-
38049004035
-
Efficient kinetic Monte Carlo simulation
-
Schulze T.P. Efficient kinetic Monte Carlo simulation. Journal of Computational Physics 227 (2008) 2455-2462
-
(2008)
Journal of Computational Physics
, vol.227
, pp. 2455-2462
-
-
Schulze, T.P.1
-
16
-
-
44649178886
-
A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks
-
Slepoy A., Thompson A.P., and Plimpton S.J. A constant-time kinetic Monte Carlo algorithm for simulation of large biochemical reaction networks. Journal of Chemical Physics 128 (2008) 205101
-
(2008)
Journal of Chemical Physics
, vol.128
, pp. 205101
-
-
Slepoy, A.1
Thompson, A.P.2
Plimpton, S.J.3
|