Cost-effective sequence-based nonhuman primate MHC class I genotyping from RNA

Methods

Volumn 49, Issue 1, 2009, Pages 11-17

  Karl, Julie A ^a   Wiseman, Roger W ^a   O'Connor, David H ^a,b  

^a UNIVERSITY OF WISCONSIN   (United States)

^b UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Class I; Genotyping; Major histocompatibility complex; Nonhuman primates; Sequence based

Indexed keywords

MAJOR HISTOCOMPATIBILITY ANTIGEN CLASS 1; RNA;

AMPLICON; ARTICLE; COST EFFECTIVENESS ANALYSIS; DNA LIBRARY; DNA POLYMORPHISM; DNA SEQUENCE; EXON; GENOTYPE; MOLECULAR CLONING; POLYMERASE CHAIN REACTION; PRIMATE; PRIORITY JOURNAL; RNA ISOLATION;

ALLELES; ANIMALS; GENES, MHC CLASS I; GENOTYPE; MACACA MULATTA; MAJOR HISTOCOMPATIBILITY COMPLEX; POLYMERASE CHAIN REACTION; RNA; SEQUENCE ANALYSIS, RNA;

PRIMATES;

EID: 68949147013     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1016/j.ymeth.2009.05.002     Document Type: Article

References (18)

1. Horton R., Wilming L., Rand V., Lovering R.C., Bruford E.A., Khodiyar V.K., Lush M.J., Povey S., Talbot Jr. C.C., Wright M.W., Wain H.M., Trowsdale J., Ziegler A., and Beck S. Nat. Rev. Genet. 5 (2004) 889-899
2. Daza-Vamenta R., Glusman G., Rowen L., Guthrie B., and Geraghty D.E. Genome Res. 14 (2004) 1501-1515
3. Rosenzweig M., Connole M., Glickman R., Yue S.P., Noren B., DeMaria M., and Johnson R.P. Blood 97 (2001) 1951-1959
4. Moore C.B., John M., James I.R., Christiansen F.T., Witt C.S., and Mallal S.A. Science 296 (2002) 1439-1443
5. Sauermann U., Siddiqui R., Suh Y.S., Platzer M., Leuchte N., Meyer H., Matz-Rensing K., Stoiber H., Nurnberg P., Hunsmann G., Stahl-Hennig C., and Krawczak M. Genes Immun. 9 (2008) 69-80
6. Knapp L.A. Tissue Antigens 65 (2005) 211-219
7. Blasky A.J., Karl J.A., Wiseman R.W., Read D.S., and O'Connor D.H. Immunogenetics 60 (2008) 575-584
8. Kaizu M., Borchardt G.J., Glidden C.E., Fisk D.L., Loffredo J.T., Watkins D.I., and Rehrauer W.M. Immunogenetics 59 (2007) 693-703
9. Karl J.A., Wiseman R.W., Campbell K.J., Blasky A.J., Hughes A.L., Ferguson B., Read D.S., and O'Connor D.H. Immunogenetics 60 (2008) 37-46
10. Penedo M.C., Bontrop R.E., Heijmans C.M., Otting N., Noort R., Rouweler A.J., de Groot N., de Groot N.G., Ward T., and Doxiadis G.G. Immunogenetics 57 (2005) 198-209
11. Wiseman R.W., Wojcechowskyj J.A., Greene J.M., Blasky A.J., Gopon T., Soma T., Friedrich T.C., O'Connor S.L., and O'Connor D.H. J. Virol. 81 (2007) 349-361
12. Loffredo J.T., Friedrich T.C., Leon E.J., Stephany J.J., Rodrigues D.S., Spencer S.P., Bean A.T., Beal D.R., Burwitz B.J., Rudersdorf R.A., Wallace L.T., Piaskowski S.M., May G.E., Sidney J., Gostick E., Wilson N.A., Price D.A., Kallas E.G., Piontkivska H., Hughes A.L., Sette A., and Watkins D.I. PLoS One 2 (2007) e1152
13. Otting N., Heijmans C.M., Noort R.C., de Groot N.G., Doxiadis G.G., van Rood J.J., Watkins D.I., and Bontrop R.E. Proc. Natl. Acad. Sci. USA 102 (2005) 1626-1631
14. Pendley C.J., Becker E.A., Karl J.A., Blasky A.J., Wiseman R.W., Hughes A.L., O'Connor S.L., and O'Connor D.H. Immunogenetics 60 (2008) 339-351
15. Robinson J., Waller M.J., Stoehr P., and Marsh S.G. Nucleic Acids Res. 33 (2005) D523-D526
16. Maiers M., Gragert L., and Klitz W. Hum. Immunol. 68 (2007) 779-788
17. O'Connor S.L., Blasky A.J., Pendley C.J., Becker E.A., Wiseman R.W., Karl J.A., Hughes A.L., and O'Connor D.H. Immunogenetics 59 (2007) 449-462
18. R.W. Wiseman, J.A. Karl, B.N. Bimber, C.E. O'Leary, S.M. Lank, J.J. Tuscher, A.M. Detmer, P. Bouffard, N. Levenkova, C.L. Turcotte, E. Szekeres Jr., C. Wright, R. Harkins, D.H. O'Connor, Nat. Med., in press.