A novel multiplex PCR assay for Salmonella subspecies identification

Journal of Applied Microbiology

Volumn 107, Issue 3, 2009, Pages 805-811

  Lee, K ^a   Iwata, T ^a   Shimizu, M ^a   Taniguchi, T ^a   Nakadai, A ^a   Hirota, Y ^a   Hayashidani, H ^a  

^a TOKYO UNIVERSITY OF AGRICULTURE AND TECHNOLOGY   (Japan)

Author keywords

Detection; Genotyping; Multiplex PCR; Reptiles; Salmonella subspecies

Indexed keywords

SALMONELLA; SCREENING;

BAND-PATTERNS; DETECTION; ENCODINGS; GENOTYPING; MULTIPLEX POLYMERASE CHAIN REACTION; PHENOTYPIC TRAITS; REPTILE; SALMONELLA STRAINS; SALMONELLA SUBSPECIES; SPECIES SPECIFICS;

POLYMERASE CHAIN REACTION;

BACTERIUM; BIOASSAY; BIOCHEMISTRY; DETECTION METHOD; GENE EXPRESSION; GENOTYPE; PHENOTYPE; POLYMERASE CHAIN REACTION; REPTILE; SUBSPECIES;

ARTICLE; BACTERIAL GENE; BACTERIAL STRAIN; BACTERIUM IDENTIFICATION; FLIB GENE; GATD GENE; GENETIC CODE; GENOTYPE; INVA GENE; MDCA GENE; MULTIPLEX POLYMERASE CHAIN REACTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; SALMONELLA; SALMONELLA BONGORI; SALMONELLA ENTERICA; STM4057 GENE; STN GENE;

REPTILIA; SALMONELLA; SALMONELLA BONGORI; SALMONELLA ENTERICA;

EID: 68949105738     PISSN: 13645072     EISSN: 13652672     Source Type: Journal    
DOI: 10.1111/j.1365-2672.2009.04263.x     Document Type: Article

References (35)

1. Anon (2004) Cultural methods. In Collins, Lyne's Microbiological Methods ed. Collins, C.H., Lyne, P.M., Grange, J.M. Falkinhamm, J.O. III. pp. 81 88. London : Hodder Arnold.
2. Bäumler, A.J. Heffron, F. (1998) Structure of the smpB-nrdE intergenic region of Salmonella enterica. J Bacteriol 180, 2220 2223.
3. Bäumler, A.J., Hargis, B.M. Tsolis, R.M. (2000) Enhanced: tracing the origins of Salmonella outbreaks. Science 287, 50 52.
4. Bopp, C.A., Brenner, F.W., Fields, P.I., Wells, J.G. Strockbine, N.A. (2003) Escherichia, Shigella, and Salmonella. In : Manual of Clinical Microbiology ed. Murray, P.R., Baro, E.J., Jorgensen, J.H., Pfaller, M.A. Yolken, R.H. pp. 654 671. Washington, DC : ASM Press.
5. Boyd, E.F., Wang, F., Whittam, T.S. Selander, R.K. (1996) Molecular genetic relationships of the Salmonellae. Appl Environ Microbiol 62, 804 808.
6. Centers for Disease Control and Prevention (2003) Reptile-associated Salmonellosis - selected states, 1998-2002. MMWR Morb Mortal Wkly Rep 52, 1206 1209.
7. Chan, K., Baker, S., Kim, C.C., Detweiler, C.S., Dougan, G. Falkow, S. (2003) Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar Typhimurium DNA microarray. J Bacteriol 185, 553 563.
8. Chiu, C.H. Ou, J.T. (1996) Rapid identification of Salmonella serovars in feces by specific detection of virulence genes, invA and spvC, by an enrichment broth culture-multiplex PCR combination assay. J Clin Microbiol 34, 2619 2622.
9. D'Aoust, J-Y. Maurer, J. (2007) Salmonella Species. In Food Microbiology ed. Doyle, M.P. Beuchat, L.R. pp. 187 236. Washington DC : ASM Press.
10. De Jong, B., Anderson, Y. Ekdahl, K. (2005) Effect of regulation and education on reptile-associated Salmonellosis. Emerg Infect Dis 11, 398 403.
11. Geue, L. Loschner, U. (2002) Salmonella enterica in reptiles of German and Austrian origin. Vet Microbiol 84, 79 91.
12. Giammanco, G.M., Pignato, S., Mammina, C., Grimont, F., Grimont, P.A.D., Nastasi, A. Giammanco, G. (2002) Persistent endemicity of Salmonella bongori 48:z35:- in southern Italy: Molecular characterization of human, animal, and environmental isolates. J Clin Microbiol 40, 3502 3505.
13. Heinzerling, A.F. Bockemuhl, J. (1996) Human infection caused by Salmonellae of subspecies II to VI in Germany, 1977-1992. Zentralbl Bakteriol 283, 391 398.
14. Herrera-León, S., McQuiston, J.R., Usera, M.A., Fields, P.I., Garaizar, J. Echeita, M.A. (2004) Multiplex PCR for distinguishing the most common phase-1 flagellar antigens of Salmonella spp. J Clin Microbiol 42, 2581 2586.
15. Hoenke, S., Schmid, M. Dimroth, P. (1997) Sequence of a gene cluster from Klebsiella pneumoniae encoding malonate decarboxylase and expression of the enzyme in Escherichia coli. Eur J Biochem 246, 530 538.
16. Kaibu, H., Iida, K., Ueki, S., Ehara, H., Simasaki, Y., Anzai, H., Toku, Y. Shirono, S. (2006) Salmonellosis of infants presumably originating from an infected turtle in Nagasaki, Japan. Jpn J Infect Dis 59, 281.
17. Kim, S., Frye, J.G., Hu, J., Fedorka-Cray, P.J., Gautom, R. Boyle, D.S. (2006) Multiplex PCR-based method for identification of common clinical serotypes of Salmonella enterica subsp. enterica. J Clin Microbiol 44, 3608 3615.
18. Kim, H., Park, S. Kim, H. (2006) Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 Salmonella genomic sequences, and genotyping of Salmonellae by using PCR. Appl Environ Microbiol 72, 6142 6151.
19. Malorny, B., Hoorfar, J., Bunge, C. Helmuth, R. (2003) Multicenter validation of the analytical accuracy of Salmonella PCR: towards an international standard. Appl Environ Microbiol 69, 290 296.
20. Miyamoto, T., Trevanich, S., Honjoh, K. Hatano, S. (1999) Rapid detection of Salmonella spp. by PCR amplification of Salmonella specific region in gatD gene. Jpn J Food Microbiol 16, 99 109.
21. Moore, M.M. Feist, M.D. (2007) Real-time PCR method for Salmonella spp. targeting the stn gene. J Appl Microbiol 102, 516 530.
22. Nakadai, A., Kuroki, T., Kato, Y., Suzuki, R., Yamai, S., Yaginuma, C., Shiotani, R., Yamanouchi, A. et al. (2005) Prevalence of Salmonella spp. in pet reptiles in Japan. J Vet Med Sci 67, 97 101.
23. O'Hara, C.M. (2005) Manual and automated instrumentation for identification of Enterobacteriaceae and other aerobic gram-negative bacilli. Clin Microbiol Rev 18, 147 162.
24. Pasmans, F., Martel, A., Boyen, F., Vandekerchove, D., Wybo, I., Immerseel, F.V., Heyndrickx, M., Collard, J.M. et al. (2005) Characterization of Salmonella isolates from captive lizards. Vet Microbiol 110, 285 291.
25. Popoff, M.Y. (2001) Antigenic Formulas of the Salmonella Serovars, 8th edn. Paris, France : WHO Collaborating Centre for Reference and Research on Salmonella, Institute Pasteur.
26. Popoff, M.Y. Le Minor, L.E. (2005) Genus XXXIII. Salmonella. in Bergey's Manual of Systematic Bacteriology ed. Brenner, D.J., Krieg, N.R. Staley, J.T. pp. 764 799. Baltimore, MD : Williams and Wilkins.
27. Porwollik, S., Wong, R.M. McClelland, M. (2002) Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A 99, 8956 8961.
28. Prager, R., Fruth, A. Tschäpe, H. (1995) Salmonella enterotoxin (stn) gene is prevalent among strains of Salmonella enterica, but not among Salmonella bongori and other Enterobacteriaceae. FEMS Immunol Med Microbiol 12, 47 50.
29. Römkens, T.E.H., Hekker, T.A.M. Smulders, Y.M. (2003) Turtle-associated human Salmonellosis. Clin Infect Dis 37, e167 e169.
30. Rosselló-Mora, R. Amann, R. (2001) The species concept for prokaryotes. FEMS Microbiol Rev 25, 39 67.
31. Sanyal, D., Douglas, T. Roberts, R. (1997) Salmonella infection acquired from reptilian pets. Arch Dis Child 77, 345 346.
32. Shelobolina, E.S., Sullivan, S.A., O'Neil, K.R., Nervin, K.P. Lovely, D.R. (2004) Isolation, characterization, and U(VI)-reducing potential of a facultatively anaerobic, acid-resistant bacterium from low-pH, nitrate- and U(VI)-contaminated subsurface sediment and description of Salmonella subterranea sp. nov. Appl Environ Microbiol 70, 2959 2965.
33. Tavechio, A.T., Ghilardi, Â.C.R., Peresi, J.T.M., Fuzihara, T.O., Yonamine, E.K., Jakabi, M. Fernandes, S.A. (2002) Salmonella serotypes isolated from nonhuman sources in São Paulo, Brazil, from 1996 through 2000. J Food Prot 65, 1041 1044.
34. Tindall, B.J., Grimont, P.A.D., Garrity, G.M. Euzéby, J.P. (2005) Nomenclature and taxonomy of the genus Salmonella. Int J Syst Evol Microbiol 55, 521 524.
35. Woodward, D.L., Khakhria, R. Johnson, W.M. (1997) Human salmonellosis associated with exotic pets. J Clin Microbiol 35, 2786 2790.