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Volumn 5, Issue 4, 2009, Pages 432-446

Application of the Burrows-Wheeler Transform for searching for tandem repeats in DNA sequences

Author keywords

Block sorting; Burrows Wheeler transform; BWT; Suffix array; Tandem repeat

Indexed keywords

ALGORITHM; ARTICLE; BURROWS WHEELER TRANSFORM; DNA FINGERPRINTING; DNA SEQUENCE; GENOMICS; HUMAN; NONHUMAN; NUCLEOTIDE SEQUENCE; SEQUENCE ANALYSIS; TANDEM REPEAT;

EID: 68949105657     PISSN: 17445485     EISSN: 17445493     Source Type: Journal    
DOI: 10.1504/IJBRA.2009.027517     Document Type: Article
Times cited : (3)

References (10)
  • 1
    • 49049125709 scopus 로고
    • Optimal off-line detection of repetitions in a string
    • Apostolico, A. and Preparata, F.P. (1983) 'Optimal off-line detection of repetitions in a string', Theoretical Computer Science, Vol.22, pp.297-315.
    • (1983) Theoretical Computer Science , vol.22 , pp. 297-315
    • Apostolico, A.1    Preparata, F.P.2
  • 2
    • 0033555906 scopus 로고    scopus 로고
    • Tandem repeats finder: A program to analyze DNA sequences
    • Benson, G. (1999) 'Tandem repeats finder: a program to analyze DNA sequences', Nucleic Acids Research, Vol.27, pp.573-580.
    • (1999) Nucleic Acids Research , vol.27 , pp. 573-580
    • Benson, G.1
  • 3
    • 0003291859 scopus 로고
    • A block-sorting lossless data compression algorithm
    • Burrows, M. and Wheeler, D.J. (1994) 'A block-sorting lossless data compression algorithm', SRC Research Report, p.124.
    • (1994) SRC Research Report , pp. 124
    • Burrows, M.1    Wheeler, D.J.2
  • 5
    • 0001444363 scopus 로고
    • An optimal algorithm for computing the repetitions in a word
    • Crochemore, M. (1981) 'An optimal algorithm for computing the repetitions in a word', Information Processing Letters, Vol.12, pp.244-250.
    • (1981) Information Processing Letters , vol.12 , pp. 244-250
    • Crochemore, M.1
  • 6
    • 2642561134 scopus 로고    scopus 로고
    • Doctor of Philosophy Dissertation, Silesian University of Technology, Gliwice, Poland
    • Deorowicz, S. (2003) Universal Lossless Data Compression Algorithms, Doctor of Philosophy Dissertation, Silesian University of Technology, Gliwice, Poland, p.136.
    • (2003) Universal Lossless Data Compression Algorithms , pp. 136
    • Deorowicz, S.1
  • 8
    • 0001338917 scopus 로고
    • An O(n log n) algorithm for finding all repetitions in a string
    • Main, M.G. and Lorentz, R.J. (1984) 'An O(n log n) algorithm for finding all repetitions in a string', Journal of Algorithms, Vol.5, pp.422-432.
    • (1984) Journal of Algorithms , vol.5 , pp. 422-432
    • Main, M.G.1    Lorentz, R.J.2
  • 9
    • 0027681165 scopus 로고
    • Suffix array: A new method for on-line string searches
    • Manber, U. and Myers, E.W. (1993) 'Suffix array: a new method for on-line string searches', SIAM Journal of Computing, Vol.22, pp.935-948.
    • (1993) SIAM Journal of Computing , vol.22 , pp. 935-948
    • Manber, U.1    Myers, E.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.