Calculation of free energies in fluid membranes subject to heterogeneous curvature fields

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 80, Issue 1, 2009, Pages

  Agrawal, Neeraj J ^a   Radhakrishnan, Ravi ^a  

^a UNIVERSITY OF PENNSYLVANIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL METHODOLOGY; DIFFERENT SIZES; ELASTIC FLUIDS; ENERGY CHANGES; FINITE TEMPERATURES; FLUID MEMBRANE; INTRINSIC CURVATURE; MEMBRANE BENDING; PLANAR MEMBRANES; RELATIVE FREE ENERGY; SIMPLE MODEL; THERMODYNAMIC CYCLE; THERMODYNAMIC INTEGRATION;

BENDING (DEFORMATION); FREE ENERGY; THERMODYNAMICS;

MEMBRANES;

EID: 68949086190     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.80.011925     Document Type: Article

References (35)

1. H. T. McMahon and J. L. Gallop, Nature (London) 438, 590 (2005). 10.1038/nature04396 (Pubitemid 41740562)
2. J. Zimmerberg and M. M. Kozlov, Nat. Rev. Mol. Cell Biol. 7, 9 (2006). 10.1038/nrm1784 (Pubitemid 43361568)
3. S. Oved and Y. Yarden, Nature (London) 416, 133 (2002). 10.1038/416133a (Pubitemid 34246460)
4. A. A. Schmidt, Nature (London) 419, 347 (2002).
5. T. Kirchhausen, Nat. Rev. Mol. Cell Biol. 1, 187 (2000). 10.1038/35043117
6. T. Chou, K. S. Kim, and G. Oster, Biophys. J. 80, 1075 (2001). 10.1016/S0006-3495(01)76086-9
7. B. J. Reynwar, Nature (London) 447, 461 (2007). 10.1038/nature05840 (Pubitemid 46816743)
8. S.-J. E. Lee, Trends Immunol. 23, 500 (2002). 10.1016/S1471-4906(02) 02325-6 (Pubitemid 35248045)
9. S. J. Marrink, A. H. deVries, and A. E. Mark, J. Phys. Chem. B 108, 750 (2004). 10.1021/jp036508g
10. J. T. Groves, Annu. Rev. Phys. Chem. 58, 697 (2007). 10.1146/annurev. physchem.56.092503.141216 (Pubitemid 46877605)
11. J. C. Neto, Biophys. J. 91, 1108 (2006). 10.1529/biophysj.105.073783 (Pubitemid 44161942)
12. U. Seifert, K. Berndl, and R. Lipowsky, Phys. Rev. A 44, 1182 (1991). 10.1103/PhysRevA.44.1182
13. P. D. Blood and G. A. Voth, Proc. Natl. Acad. Sci. U.S.A. 103, 15068 (2006). 10.1073/pnas.0603917103 (Pubitemid 44583165)
14. D. R. Nelson, T. Piran, and S. Weinberg, Statistical Mechanics of Membranes and Surfaces (World Scientific, River Edge, NJ, 2004).
15. S. A. Safran, Statistical Thermodynamics of Surfaces, Interfaces, and Membranes (Addison-Wesley, Reading, MA, 1994).
16. Lawrence C.-L. Lin and F. L. H. Brown, Phys. Rev. E 72, 011910 (2005). 10.1103/PhysRevE.72.011910 (Pubitemid 41521064)
17. E. Reister-Gottfried, S. M. Leitenberger, and U. Seifert, Phys. Rev. E 75, 011908 (2007). 10.1103/PhysRevE.75.011908 (Pubitemid 46134167)
18. E. J. Wallace, N. M. Hooper, and P. D. Olmsted, Biophys. J. 88, 4072 (2005). 10.1529/biophysj.104.054288 (Pubitemid 40991119)
19. N. Dan, J. Phys. II 4, 1713 (1994). 10.1051/jp2:1994227
20. T. R. Weikl, Europhys. Lett. 54, 547 (2001). 10.1209/epl/i2001-00281-7
21. W. Helfrich, Z. Naturforsch. C 28, 693 (1973).
22. N. J. Agrawal, J. Weinstein, and R. Radhakrishnan, Mol. Phys. 106, 1913 (2008). 10.1080/00268970802365990
23. A. Veksler and N. S. Gov, Biophys. J. 93, 3798 (2007). 10.1529/biophysj.107.113282 (Pubitemid 350223798)
24. F. Brochard and J. F. Lennon, J. Phys. (France) 36, 1035 (1975).
25. F. Divet, G. Danker, and C. Misbah, Phys. Rev. E 72, 041901 (2005). 10.1103/PhysRevE.72.041901
26. M. M. Kozlov, Nature (London) 447, 387 (2007). 10.1038/447387a (Pubitemid 46816725)
27. D. Frenkel and B. Smit, Understanding Molecular Simulations: From Algorithms to Applications (Academic Press, San Diego, CA, 1996).
28. M. P. Allen and D. J. Tildesley, Computer Simulation of Liquids (Oxford Science, Oxford, 1987).
29. E. M. Lennon, K. Katsov, and G. H. Fredrickson, Phys. Rev. Lett. 101, 138302 (2008). 10.1103/PhysRevLett.101.138302
30. N. J. Agrawal (unpublished).
31. J. D. Hoffman, Numerical Methods for Engineers and Scientists (McGraw-Hill, New York, 1992).
32. Lawrence C.-L. Lin and F. L. H. Brown, J. Chem. Theory Comput. 2, 472 (2006). 10.1021/ct050293s
33. M. Doi, Introduction to Polymer Physics (Clarendon Press, Oxford, 1996).
34. M. Lawrenz, R. Baron, and J. A. McCammon, J. Chem. Theory Comput. 5, 1106 (2009). 10.1021/ct800559d
35. See EPAPS Document No. E-PLEEE8-80-163907 for additional information on Sec. 3. For more information on EPAPS, see http://www.aip.org/pubservs/epaps. html.