Evolutionary divergence times in the Annonaceae: Evidence of a late Miocene origin of Pseuduvaria in Sundaland with subsequent diversification in New Guinea

BMC Evolutionary Biology

Volumn 9, Issue 1, 2009, Pages

  Su, Yvonne C F ^a   Saunders, Richard M K ^a  

^a UNIVERSITY OF HONG KONG   (Hong Kong)

Author keywords

[No Author keywords available]

Indexed keywords

ANNONACEAE; ARTICLE; AUSTRALIA; BIOGEOGRAPHY; EVOLUTION; FOSSIL; GENETIC VARIABILITY; MIOCENE; NONHUMAN; PALEOTROPICS; PAPUA NEW GUINEA; PHYLOGENY; PSEUDUVARIA; BAYES THEOREM; BIOLOGICAL MODEL; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; SPECIES DIFFERENTIATION;

ANAXAGOREA; ANNONACEAE; MYA; PSEUDUVARIA;

PLANT DNA;

ANNONACEAE; AUSTRALIA; BAYES THEOREM; DNA, PLANT; EVOLUTION, MOLECULAR; FOSSILS; GENETIC SPECIATION; MODELS, GENETIC; NEW GUINEA; PHYLOGENY; SEQUENCE ANALYSIS, DNA;

EID: 68849131794     PISSN: None     EISSN: 14712148     Source Type: Journal    
DOI: 10.1186/1471-2148-9-153     Document Type: Article

References (90)

1. An update of the Angiosperm phylogeny group classification for the orders and families of flowering plants: APG II. Angiosperm Phylogeny Group (APG), Bot J Linn Soc 2003 141 399 436
2. Cladistic analysis and pollen evolution in Annonaceae. JA Doyle A Le Thomas, Acta Bot Gall 1994 141 149 170
3. Phylogenetic analysis and character evolution in Annonaceae. JA Doyle A Le Thomas, Bull Mus Hist Nat, Paris, B, Adansonia 1996 18 279 334
4. Significance of palynology for phylogeny of Annonaceae: experiments with removal of pollen characters. JA Doyle A Le Thomas, Pl Syst Evol 1997 206 133 159
5. Phylogeny, molecular and fossil dating, and biogeographic history of Annonaceae and Myristicaceae (Magnoliales). JA Doyle H Sauquet T Scharaschkin A Le Thomas, Int J Pl Sci 2004 165 S55 S67
6. Identifying clades in Asian Annonaceae: monophyletic genera in the polyphyletic Miliuseae. JB Mols B Gravendeel LW Chatrou MD Pirie PC Bygrave MW Chase PJA Keßler, Amer J Bot 2004 91 590 600
7. Historical biogeography of two cosmopolitan families of flowering plants: Annonaceae and Rhamnaceae. JE Richardson LW Chatrou JB Mols RHJ Erkens MD Pirie, Phil Trans Roy Soc Lond, B 2004 359 1495 1508
8. 'Andean-centred' genera in the short-branch clade of Annonaceae: testing biogeographical hypotheses using phylogeny reconstruction and molecular dating. MD Pirie LW Chatrou JB Mols RHJ Erkens J Oosterhof, J Biogeogr 2006 33 31 46
9. Phylogeny and historical biogeography of Anaxagorea (Annonaceae) using morphology and non-coding chloroplast sequence data. T Scharaschkin JA Doyle, Syst Bot 2005 30 712 735
10. A rapid diversification of rainforest trees (Guatteria; Annonaceae) following dispersal from Central to South America. RHJ Erkens LW Chatrou JW Maas T van der Niet V Savolainen, Mol Phylogenet Evol 2007 44 399 411 17433720
11. Molecular phylogenetics reveal multiple tertiary vicariance origins of the African rain forest trees. TLP Couvreur LW Chatrou MSM Sosef JE Richardson, BMC Biology 2008 6 54 19087283
12. Archaeanthus: an early angiosperm from the Cenomanian of the Western Interior of North America. DL Dilcher PR Crane, Ann Missouri Bot Gard 1984 71 351 361
13. Recognizing the Albian-Cenomanian (OAE1d) sequence boundary using plant carbon isotopes: Dakota Formation, Western Interior Basin, USA. DR Gröcke GA Ludvigson BL Witzke SA Robinson RM Joeckel DF Ufnar RL Ravn, Geology 2006 34 193 196
14. Some plant remains from the Upper Cretaceous and Tertiary of West Africa. KIM Chesters, Ann Mag Nat Hist 1955 12 489 504
15. Endressinia brasiliana, a magnolialean angiosperm from the Lower Cretaceous Crato Formation (Brazil). BAR Mohr MEC Bernardes-de-Oliveira, Int J Plant Sci 2004 165 1121 1133
16. Probable granular magnoliid angiosperm pollen from the Early Cretaceous. JV Ward JA Doyle CL Hotton, Pollen Spores 1989 31 101 120
17. Evolution of the angiosperms: calibrating the family tree. N Wikström V Savolainen MW Chase, Proc Roy Soc Lond, B 2001 268 2211 2220
18. MJ Sanderson, r8s version 1.71 2004 http://loco.biosci.arizona.edu/r8s/
19. A nonparametric approach to estimating divergence times in the absence of rate constancy. MJ Sanderson, Mol Biol Evol 1997 14 1218 1231
20. Estimating absolute rates of molecular evolution and divergence times: a penalized likelihood approach. MJ Sanderson, Mol Biol Evol 2002 19 101 109 11752195
21. Phylogeny reconstruction and molecular dating in four Neotropical genera of Annonaceae: the effect of taxon sampling in age estimations. MD Pirie LW Chatrou RHJ Erkens JW Maas T van der Niet JB Mols JE Richardson, Plant species-level systematics: new perspectives on pattern and process. Regnum Vegetabile Germany, Koenigstein: Koeltz, Bakker FT, Chatrou LW, Gravendeel B, Pelser PB, 2005 143 150 174
22. PAML: a program package for phylogenetic analysis by maximum likelihood. Z Yang, Comp Appl Biosci 1997 13 555 556 9367129
23. Divergence time and evolutionary rate estimation with multilocus data. JL Thorne H Kishino, Syst Biol 2002 51 689 702 12396584
24. AJ Drummond A Rambaut, BEAST ver. 1.4.8 2008 http://beast.bio.ed.ac.uk/
25. Phylogeny of the basal angiosperm genus Pseuduvaria (Annonaceae) inferred from five chloroplast DNA regions, with interpretation of morphological character evolution. YCF Su GJD Smith RMK Saunders, Mol Phylogenet Evol 2008 48 188 206 18436457
26. An extended phylogeny of Pseuduvaria (Annonaceae) with descriptions of three new species and a reassessment of the generic status of Oreomitra. YCF Su T Chaowasku RMK Saunders, Syst Bot
27. Monograph of Pseuduvaria (Annonaceae). YCF Su RMK Saunders, Syst Bot Monogr 2006 79 1 204
28. Extension during late Neogene collision in east Indonesia and New Guinea. R Hall, J Virtual Explorer 2001 4 1 13
29. Plant Biogeography of the SE Asian-AustralianRegion. T Wiffin, Bridging Wallace's Line: the environmental and cultural history and dynamics of the SE-Asian-Australian Region. Advances in Geoecology Germany, Reiskirchen: Catena Verlag, Kershaw P, David B, Tapper N, Penny D, Brown J, 2002 34 61 82
30. Sundaland Basins. R Hall CK Morley, Continent-Ocean Interactions within the East Asian Marginal Seas. Geophysical Monograph,) USA, Washington DC: American Geophysical Union, Clift P, Wang P, Kuhnt W, Hayes DE, 2004 149 55 85
31. Floral evidence of Annonaceae from the Late Cretaceous of Japan. M Takahashi EM Friis K Uesugi Y Suzuki PR Crane, Int J Plant Sci 2008 169 908 917
32. DIVA (DIspersal Vicariance Analysis) HOMEPAGE. F Ronquist, DIVA ver. 1.2 1996 http://www.ebc.uu.se/systzoo/research/diva/diva.html
33. Weighted ancestral area analysis and a solution of the redundant distribution problem. B Hausdorf, Syst Biol 1998 47 445 456 12066686
34. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/95/NT. TA Hall, Nucleic Acids Symp Ser 1999 41 95 98
35. Se-Al. A Rambaut, Sequence Alignment Editor, ver. 2.0a11 1996 http://tree.bio.ed.ac.uk/software/seal/
36. JAA Nylander, MrModeltest ver. 2.3 2008 http://www.abc.se/∼nylander/
37. BEAST: Bayesian evolutionary analysis by sampling trees. AJ Drummond A Rambaut, BMC Evol Biol 2007 7 art. 214
38. Relaxed phylogenetics and dating with confidence. AJ Drummond SYW Ho MJ Phillips A Rambaut, PLoS Biol 2006 4 699 710
39. TLP Couvreur, BEAST partitioning: a 7 step tutorial 2008 http://tlpcouvreur.googlepages.com/beastpartitioning
40. A Rambaut AJ Drummond, Tracer ver. 1.4 2007 http://tree.bio.ed.ac.uk/ software/tracer/
41. A Rambaut, FigTree ver. 1.2 2008 http://tree.bio.ed.ac.uk/software/ figtree/
42. Calibrating molecular estimates of substitution rates and divergence times in birds. SYW Ho, J Avian Biol 2007 38 409 414
43. Cape diversification and repeated out-of-southern Africa dispersal in paper daises (Asteraceae-Gnaphalieae). NG Bergh HP Linder, Mol Phylogenet Evol 2009 51 5 18 18822381
44. Evolution of syncarpy and other morphological characters in African Annonaceae: a posterior mapping approach. TLP Couvreur JE Richardson MSM Sosef RHJ Erkens LW Chatrou, Mol Phylogenet Evol 2008 47 302 318 18343689
45. The impact of fossils and taxon sampling on ancient molecular dating analyses. LA Hug AJ Roger, Mol Biol Evol 2007 24 1889 1897 17556757
46. A Takhtajan, Floristic regions of the world California: University of California Press 1986
47. A rough guide to BEAST 1.4. AJ Drummond SYW Ho N Rawlence A Rambaut, Auckland: University of Auckland 2007
48. Plate tectonic reconstructions of the Cretaceous and Cenozoic ocean basins. CR Scotese LM Gahagan RL Larson, Tectonophysics 1988 155 27 48
49. A Hallam, An outline of Phanerozoic biogeography Oxford: Oxford University Press 1994
50. Gondwana to Asia: Plate tectonics, paleogeography and the biological connectivity of the Indian sub-continent from the Middle Jurassic through latest Eocene (166-35 Ma). JR Ali JC Aitchison, Earth-Sci Rev 2008 88 145 166
51. Interplate dispersal paths for megathermal angiosperms. RJ Morley, Persp Pl Ecol, Evol Syst 2003 6 5 20
52. Flowers of Annonaceae: morphology, classification, and evolution. ECH Heusden van, Blumea 1992 suppl 7 1 218
53. The genus Cyathocalyx (Annonaceae) in the Philippines. RJ Wang RMK Saunders, Syst Bot 2006 31 285 297
54. A synopsis of Cyathocalyx species (Annonaceae) in Peninsular Malaysia, Sumatra, and Borneo, with descriptions of two new species. RJ Wang RMK Saunders, Bot J Linn Soc 2006 152 513 532
55. Studies in Annonaceae. IV. A taxonomic revision of Tetrameranthus R. E. Fries. LYT Westra, Proc Kon Ned Akad Wetensch, C 1985 88 449 482
56. The role of immigrants in the assembly of the South American rainforest tree flora. RT Pennington CW Dick, Phil Trans Roy Soc Lond, B 2004 359 1611 1622
57. Trends, rhythms, and aberration in global climate 65 Ma to present. J Zachos M Pagani L Sloan E Thomas K Billups, Science 2001 292 686 693 11326091
58. Environment and evolution through the Paleocene-Eocene thermal maximum. PD Gingerich, Trends Ecol Evol 2006 21 246 253 16697910
59. Missing fossils, molecular clocks, and the origin of the Melastomataceae. RJ Morley CW Dick, Amer J Bot 2003 90 1638 1644
60. The genus Monocarpia (Annonaceae) in Borneo including a new species Monocarpiaborneensis. JB Mols PJA Keßler, Bot Jahrb Syst 2000 122 233 240
61. Age of initiation of collision between India and Asia: a review of stratigraphic data. DB Rowley, Earth Planet Sci Lett 1996 145 1 13
62. Age of initiation of the India-Asia collision in the east-central Himalaya. BD Zhu WSF Kidd DB Rowley BS Currie N Shaffique, J Geol 2004 113 265 285
63. The onset of India-Asia continental collision: early, steep subduction required by the timing of UHP metamorphism in the western Himalaya. ML Leech S Singh AK Jain SL Klemperer RM Manickavasagam, Earth Planet Sci Letters 2005 234 83 97
64. When and where did India and Asia collide? JC Aitchison JR Ali AM Davis, J Geophys Res 2007 112B Art. B05423
65. Greater India. JR Ali JC Aitchison, Earth-Sci Rev 2005 72 169 188
66. Cretaceous and Tertiary climate change and the past distribution of megathermal rainforests. RJ Morley, Tropical rainforest responses to climatic changes Berlin: Springer, Flenley JR, Bush MB, 2007 1 31
67. Middle Miocene southern ocean cooling and Antarctic cryosphere expansion. AE Shevenell JP Kennett DW Lea, Science 2004 305 1766 1770 15375266
68. The impact of Miocene atmospheric carbon dioxide fluctuations on climate and the evolution of terrestrial ecosystems. WM Kürschner Z Kvaèek DL Dilcher, Proc Natl Acad Sci USA 2008 105 449 453 18174330
69. A synopsis of climatic and vegetational change in Southeast Asia. LR Heaney, Clim Change 1991 19 53 61
70. The plate tectonics of Cenozoic SE Asia and the distribution of land and sea. R Hall, Biogeography and geological evolution of SE Asia Leiden: Backhuys Publishers, Hall R, Holloway JD, 1998 99 131
71. The biogeographical relations of the frogs and snakes of Sundaland. RF Inger HK Voris, J Biogeogr 2001 28 863 891
72. Paleoenvironments of insular Southeast Asia during the Last Glacial Period: a savanna corridor in Sundaland. MI Bird D Taylor C Hunt, Quaternary Sci Rev 2005 24 2228 2242
73. Cenozoic Plate interaction of the Australia and Philippine Sea Plate: "hit-and-run" tectonics. M Pubellier J Ali C Monnier, Tectonophysics 2003 363 181 199
74. Cenozoic tectonics of New Guinea. van Ufford AQ M Cloos, Amer Assoc Petrol Geol Bull 2005 89 119 140
75. Cenozoic reconstructions of SE Asia and the SW Pacific: changing patterns of land and sea. R Hall, Faunal and floral migrations and evolution in SE Asia-Asutralasia Lisse: Swets and Zeitlinger Publisher, Metcalfe I, Smith JMB, Morwood M, Davidson ID, 2001 35 56
76. Pliocene colonization and adaptive radiations in Australia and New Guinea (Sahul): multilocus systematics of the old endemic rodents (Muroidea: Murinae). KC Rowe ML Reno DM Richmond RM Adkins SJ Steppan, Mol Phylogenet Evol 2008 47 84 101 18313945
77. Systematics, biogeography anddiversification of the Indo-Australian genus Delias Hübner (Lepidoptera: Pieridae): phylogenetic evidence supports an 'out-of-Australia' origin. MF Barby NE Pierce, Syst Entomol 2007 32 2 25
78. The origin and evolution of Indomalesian, Australasian and Pacific island biotas: insights from Aglaieae (Meliaceae, Sapindales). AN Muellner CM Pannell A Coleman MW Chase, J Biogeogr 2008 35 1769 1789
79. Tertiary vegetational history of Southeast Asia, with emphasis on the biogeographical relationships with Australia. RJ Morley, Bridging Wallace's line: the environmental and cultural history and dynamics of the SE-Asian-Australian region Reiskirchen: Catena Verlag, Kershaw P, David B, Tapper N, Penny D, Brown J, 2002 49 60
80. DJ Johnson, The geology of Australia Cambridge: Cambridge University Press 2004
81. Evolutionary versus ecological success in Antarctic benthic invertebrates. E Poulin AT Palma JP Féral, Trends Ecol Evol 2002 17 218 222
82. Mesozoic-Cenozoic evolution of Australia's New Guinea margin in a west Pacific context. KC Hill R Hall, Evolution and dynamics of the Australian Plate Sydney: Geological Society of Australia Special Publication 22 and Geological Society of America Special Paper 372, Hillis RR, Müller RD, 2003 259 283
83. Distribution and evolution of the Anopheles punctulatus group (Diptera: Culicidae) in Australia and Papua New Guinea. NW Beebe RD Cooper, Int J Parasitol 2002 32 563 574 11943229
84. Plant evolution and endemism in Andean South America: an introduction. KR Young CU Ulloa JL Luteyn S Knapp, Bot Rev 2002 68 4 21
85. Biogeography of mammals in SE Asia: estimates of rates of colonization, extinction and speciation. LR Heaney, Biol J Linn Soc 1986 28 127 165
86. Maps of Pleistocene sea levels in Southeast Asia: shorelines, river systems and time durations. HK Voris, J Biogeogr 2000 27 1153 1167
87. Late Cainozoic vegetational and environmental changes in the Malay Archipelago. RJ Morley JR Flenley, Biogeographical Evolution of the Malay Archipelago Oxford Monographs on Biogeography, UK, Oxford: Oxford University Press, Whitmore TC, 1987 4 50 59
88. Phylogenetic relationships of the Australo-Papuan Liasis pythons (Reptilia: Macrostomata), based on mitochondrial DNA. LH Rawlings D Barker SC Donnellan, Austral J Zool 2004 52 215 227
89. Zoogeography of freshwater invertebrates of Southeast Asia, with special reference to Odonata. J Van Tol D Gassmann, Biogeography, Time and Place-Distributions, Barr iers and Islands Dordrecht: Springer, Renema W, 2007 45 91
90. Bats, flowers and fruit: evolutionary relationships in the Old World. AG Marshall, Biol J Linn Soc 1983 20 115 135