A strategy for constructing aneuploid yeast strains by transient nondisjunction of a target chromosome

BMC Genetics

Volumn 10, Issue , 2009, Pages

  Anders, Kirk R ^a   Kudrna, Julie R ^a   Keller, Kirstie E ^a   Kinghorn, BreAnna A ^a   Miller, Elizabeth M ^a   Pauw, Daniel ^a   Peck, Anders T ^a   Shellooe, Christopher E ^a   Strong, Isaac J T ^a  

^a GONZAGA UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA TUBULIN; BETA TUBULIN; GALACTOSE; SACCHAROMYCES CEREVISIAE PROTEIN; TUB1 PROTEIN, S CEREVISIAE; TUBULIN;

ANEUPLOIDY; ARTICLE; CENTROMERE; CHROMOSOME 3; CHROMOSOME 4; CHROMOSOME 6; CHROMOSOME DUPLICATION; COMPARATIVE GENOMIC HYBRIDIZATION; CONTROLLED STUDY; FUNGAL STRAIN; GENE DUPLICATION; NONHUMAN; NUCLEOTIDE SEQUENCE; SACCHAROMYCES CEREVISIAE; STOICHIOMETRY; CHROMOSOME; GENETICS; METABOLISM; NONDISJUNCTION; PLASMID;

SACCHAROMYCES CEREVISIAE;

ANEUPLOIDY; CENTROMERE; CHROMOSOMES, FUNGAL; COMPARATIVE GENOMIC HYBRIDIZATION; NONDISJUNCTION, GENETIC; PLASMIDS; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; TUBULIN;

EID: 68849129170     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-36     Document Type: Article

References (45)

1. Torres EM Williams BR Amon A Aneuploidy: Cells losing their balance Genetics 2008, 179(2):737-746 2429870 18558649
2. Birchler JA Veitia RA The gene balance hypothesis: From classical genetics to modern genomics Plant Cell 2007, 19(2):395-402 1867330 17293565
3. Torres EM Sokolsky T Tucker CM Chan LY Boselli M Dunham MJ Amon A Effects of aneuploidy on cellular physiology and cell division in haploid yeast Science 2007, 317:5840-916 924 17702937
4. Cox BS Bevan EA Aneuploidy in yeast New Phytologist 1962, 61(3):342-355
5. Hughes TR Roberts CJ Dai H Jones AR Meyer MR Slade D Burchard J Dow S Ward TR Kidd MJ et al Widespread aneuploidy revealed by DNA microarray expression profiling Nat Genet 2000, 25(3):333-337 10888885
6. Campbell D Doctor JS Feuersanger JH Doolittle MM Differential mitotic stability of yeast disomes derived from triploid meiosis Genetics 1981, 98(2):239-255 1214437 7035289
7. Shaffer B Brearley I Littlewood R Fink GR A stable aneuploid of Saccharomyces cerevisiae Genetics 1971, 67(4):483-495 1212565 5097530
8. Conde J Fink GR A mutant of Saccharomyces cerevisiae defective for nuclear fusion Proc Natl Acad Sci USA 1976, 73(10):365- 3655 431176 790391
9. Nilsson-Tillgren T Petersen JGL Holmberg S Kielland-Brandt MC Transfer of chromosome III during kar mediated cytoduction in yeast Carlsberg Research Communications 1980, 45(2):113-117
10. Dutcher SK Internuclear transfer of genetic information in kar1-1/KAR1 heterokaryons in Saccharomyces cerevisiae Mol Cell Biol 1981, 1(3):245-253 369668 6765600
11. Rieder CL Maiato H Stuck in division or passing through: What happens when cells cannot satisfy the spindle assembly checkpoint Dev Cell 2004, 7(5):637-651 2590768 15525526
12. Biggins S Walczak CE Captivating capture: How microtubules attach to kinetochores Curr Biol 2003, 13(11):R449-460 12781157
13. Hill A Bloom K Genetic manipulation of centromere function Mol Cell Biol 1987, 7(7):2397-2405 365371 3302676
14. Chan CS Botstein D Isolation and characterization of chromosome-gain and increase-in-ploidy mutants in yeast Genetics 1993, 135(3):677-691 1205712 8293973
15. Baudin A Ozier-Kalogeropoulos O Denouel A Lacroute F Cullin C A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae Nucleic Acids Res 1993, 21(14):3329-3330 309783 8341614
16. Hill A Bloom K Acquisition and processing of a conditional dicentric chromosome in Saccharomyces cerevisiae Mol Cell Biol 1989, 9(3):1368-1370 362735 2657392
17. Collins KA Castillo AR Tatsutani SY Biggins S De novo kinetochore assembly requires the centromeric histone H3 variant Mol Biol Cell 2005, 16(12):5649-5660 1289410 16207811
18. Schiestl RH Igarashi S Hastings PJ Analysis of the mechanism for reversion of a disrupted gene Genetics 1988, 119(2):237-247 1203408 2840335
19. Cherry JM Ball C Weng S Juvik G Schmidt R Adler C Dunn B Dwight S Riles L Mortimer RK et al Genetic and physical maps of Saccharomyces cerevisiae Nature 1997, 387(6632 Suppl):67-73 9169866
20. Hunter N Chambers SR Louis EJ Borts RH The mismatch repair system contributes to meiotic sterility in an interspecific yeast hybrid Embo J 1996, 15(7):1726-1733 450085 8612597
21. Liu H Krizek J Bretscher A Construction of a GAL1-regulated yeast cDNA expression library and its application to the identification of genes whose overexpression causes lethality in yeast Genetics 1992, 132(3):665-673 1205205 1468625
22. Moriya H Shimizu-Yoshida Y Kitano H In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae PLoS Genet 2006, 2(7):e111 1500812 16839182
23. Katz W Weinstein B Solomon F Regulation of tubulin levels and microtubule assembly in Saccharomyces cerevisiae: Consequences of altered tubulin gene copy number Mol Cell Biol 1990, 10(10):5286-5294 361216 2204811
24. Vinh DB Drubin DG A yeast TCP-1-like protein is required for actin function in vivo Proc Natl Acad Sci USA 1994, 91(19):9116-9120 44758 7916461
25. Visintin R Craig K Hwang ES Prinz S Tyers M Amon A The phosphatase Cdc14 triggers mitotic exit by reversal of Cdk-dependent phosphorylation Mol Cell 1998, 2(6):709-718 9885559
26. Schatz PJ Solomon F Botstein D Genetically essential and nonessential alpha-tubulin genes specify functionally interchangeable proteins Mol Cell Biol 1986, 6(11):3722-3733 367133 3540600
27. Weinstein B Solomon F Phenotypic consequences of tubulin overproduction in Saccharomyces cerevisiae: Differences between alpha-tubulin and beta-tubulin Mol Cell Biol 1990, 10(10):5295-5304 361218 2204812
28. Reid RJ Sunjevaric I Voth WP Ciccone S Du W Olsen AE Stillman DJ Rothstein R Chromosome-scale genetic mapping using a set of 16 conditionally stable Saccharomyces cerevisiae chromosomes Genetics 2008, 180(4):1799-1808 2600922 18832360
29. Alvaro D Sunjevaric I Reid RJ Lisby M Stillman DJ Rothstein R Systematic hybrid LOH: A new method to reduce false positives and negatives during screening of yeast gene deletion libraries Yeast 2006, 23(14-15):1097-1106 17083134
30. Amberg DC Burke DJ Strathern JN Methods in Yeast Genetics: A Cold Spring Harbor Laboratory course manual Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press 2005 2005
31. Kassir Y Simchen G Monitoring meiosis and sporulation in Saccharomyces cerevisiae Methods Enzymol 1991, 194:94-110 2005827
32. Sikorski RS Hieter P A system of shuttle vectors and yeast host strains designed for efficient manipulation of DNA in Saccharomyces cerevisiae Genetics 1989, 122(1):19-27 1203683 2659436
33. Christianson TW Sikorski RS Dante M Shero JH Hieter P Multifunctional yeast high-copy-number shuttle vectors Gene 1992, 110(1):119-122 1544568
34. Rozen S Skaletsky H Primer3 on the WWW for general users and for biologist programmers Methods Mol Biol 2000 ,132:365-386 10547847
35. Sambrook J Russell DW Molecular Cloning: A Laboratory Manual Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press 3 2001
36. Ma H Kunes S Schatz PJ Botstein D Plasmid construction by homologous recombination in yeast Gene 1987, 58(2-3):201-216 2828185
37. Winston F Dollard C Ricupero-Hovasse SL Construction of a set of convenient Saccharomyces cerevisiae strains that are isogenic to S288C Yeast 1995, 11(1):53-55 7762301
38. Brachmann CB Davies A Cost GJ Caputo E Li J Hieter P Boeke JD Designer deletion strains derived from Saccharomyces cerevisiae S288C: A useful set of strains and plasmids for PCR-mediated gene disruption and other applications Yeast 1998, 14(2):115-132 9483801
39. Rose M Winston F Identification of a Ty insertion within the coding sequence of the S. cerevisiae URA3 gene Mol Gen Genet 1984, 193(3):557-560 6323928
40. Johnston M Flick JS Pexton T Multiple mechanisms provide rapid and stringent glucose repression of GAL gene expression in Saccharomyces cerevisiae Mol Cell Biol 1994, 14(6):3834-3841 358750 8196626
41. DeRisi JL Iyer VR Brown PO Exploring the metabolic and genetic control of gene expression on a genomic scale Science 1997, 278(5338):680-686 9381177
42. Hoffman CS Winston F A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli Gene 1987, 57(2-3):267-272 3319781
43. ScanAlyze http://rana.lbl.gov/EisenSoftware.htm
44. Saldanha AJ Java Treeview - extensible visualization of microarray data Bioinformatics 2004, 20(17):3246-3248 15180930
45. Gene Expression Omnibus http://www.ncbi.nlm.nih.gov/geo/