-
2
-
-
57649114800
-
Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic
-
Agogué H, Brink M, Dinasquet J, Herndl GJ(2008) Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic. Nature 456:788-791
-
(2008)
Nature
, vol.456
, pp. 788-791
-
-
Agogué, H.1
Brink, M.2
Dinasquet, J.3
Herndl, G.J.4
-
3
-
-
0025183708
-
Basic local alignment search tool
-
DOI 10.1006/jmbi.1990.9999
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ(1990) Basic local alignment search tool. J Mol Biol 215:403-410 (Pubitemid 20364473)
-
(1990)
Journal of Molecular Biology
, vol.215
, Issue.3
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
33845520639
-
Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tóbari, Mexico
-
Beman JM, Francis CA(2006) Diversity of ammonia-oxidizing archaea and bacteria in the sediments of a hypernutrified subtropical estuary: Bahia del Tóbari, Mexico. Appl Environ Microbiol 72:7767-7777
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 7767-7777
-
-
Beman, J.M.1
Francis, C.A.2
-
5
-
-
34248562001
-
Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient
-
DOI 10.1111/j.1462-2920.2007.01260.x
-
Bernhard AE, Tucker J, Giblin AE, Stahl DA(2007) Functionally distinct communities of ammonia-oxidizing bacteria along an estuarine salinity gradient. Environ Microbiol 9: 1439-1447 (Pubitemid 46763523)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.6
, pp. 1439-1447
-
-
Bernhard, A.E.1
Tucker, J.2
Giblin, A.E.3
Stahl, D.A.4
-
6
-
-
0032412330
-
Functional gene hybridization patterns of terrestrial ammonia-oxidizing bacteria
-
Bruns MA, Fries MR, Tiedje JM, Paul EA(1998) Functional gene hybridization patterns of terrestrial ammonia-oxidizing bacteria. Microb Ecol 36:293-302
-
(1998)
Microb Ecol
, vol.36
, pp. 293-302
-
-
Ma, B.1
Fries, M.R.2
Tiedje, J.M.3
Paul, E.A.4
-
7
-
-
35948999268
-
Ammonia oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia
-
DOI 10.1038/ismej.2007.79, PII ISMEJ200779
-
Caffrey JM, Bano N, Kalanetra K, Hollibaugh JT(2007) Ammonia-oxidation and ammonia-oxidizing bacteria and archaea from estuaries with differing histories of hypoxia. ISME J 1:660-662 (Pubitemid 350076523)
-
(2007)
ISME Journal
, vol.1
, Issue.7
, pp. 660-662
-
-
Caffrey, J.M.1
Bano, N.2
Kalanetra, K.3
Hollibaugh, J.T.4
-
8
-
-
33947110858
-
Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: A basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids
-
DOI 10.1111/j.1462-2920.2006.01227.x
-
Coolen MJL, Abbas B, van Bleijswijk J, Hopmans EC, Kuypers MMM, Wakeham SG, Damsté JSS(2007) Putative ammonia-oxidizing Crenarchaeota in suboxic waters of the Black Sea: a basin-wide ecological study using 16S ribosomal and functional genes and membrane lipids. Environ Microbiol 9:1001-1016 (Pubitemid 46397097)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.4
, pp. 1001-1016
-
-
Coolen, M.J.L.1
Abbas, B.2
Van Bleijswijk, J.3
Hopmans, E.C.4
Kuypers, M.M.M.5
Wakeham, S.G.6
Sinninghe Damste, J.S.7
-
9
-
-
26844450130
-
Agreement between theory and measurement in quantification of ammonia-oxidizing bacteria
-
DOI 10.1128/AEM.71.10.6325-6334.2005
-
Coskuner G, Ballinger SJ, Davenport RJ, Pickering RL, Solera R, Head IM, Curtis TP(2005) Agreement between theory and measurement in quantification of ammonia-oxidizing bacteria. Appl Environ Microbiol 71:6325-6334 (Pubitemid 41456933)
-
(2005)
Applied and Environmental Microbiology
, vol.71
, Issue.10
, pp. 6325-6334
-
-
Coskuner, G.1
Ballinger, S.J.2
Davenport, R.J.3
Pickering, R.L.4
Solera, R.5
Head, I.M.6
Curtis, T.P.7
-
10
-
-
51149114568
-
Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea
-
Dang H, Zhang X, Sun J, Li T, Zhang Z, Yang G(2008) Diversity and spatial distribution of sediment ammonia-oxidizing crenarchaeota in response to estuarine and environmental gradients in the Changjiang Estuary and East China Sea. Microbiology 154:2084-2095
-
(2008)
Microbiology
, vol.154
, pp. 2084-2095
-
-
Dang, H.1
Zhang, X.2
Sun, J.3
Li, T.4
Zhang, Z.5
Yang, G.6
-
11
-
-
0026755238
-
Archaea in coastal marine environments
-
DeLong EF(1992) Archaea in coastal marine environments. Proc Natl Acad Sci USA 89:5685-5689
-
(1992)
Proc Natl Acad Sci USA
, vol.89
, pp. 5685-5689
-
-
Delong, E.F.1
-
12
-
-
0028594902
-
High abundance of Archaea in Antarctic marine picoplankton
-
DeLong EF, Ying Wu K, Prezelin BB, Jovine RVM(1994) High abundance of Archaea in Antarctic marine picoplankton. Nature 371:695-697
-
(1994)
Nature
, vol.371
, pp. 695-697
-
-
Delong, E.F.1
Ying Wu, K.2
Prezelin, B.B.3
Rvm, J.4
-
13
-
-
26844541457
-
Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean
-
Francis CA, Roberts KJ, Beman JM, Santoro AE, Oakley BB(2005) Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. Proc Natl Acad Sci USA 102:14683-14688
-
(2005)
Proc Natl Acad Sci USA
, vol.102
, pp. 14683-14688
-
-
Francis, C.A.1
Roberts, K.J.2
Beman, J.M.3
Santoro, A.E.4
Oakley, B.B.5
-
15
-
-
0002051540
-
BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall TA(1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41:95-98
-
(1999)
Nucleic Acids Symp ser
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
16
-
-
33845286513
-
Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum
-
DOI 10.1073/pnas.0608549103
-
Hallam SJ, Konstantinidis KT, Putnam N, Schleper C and others(2006a) Genomic analysis of the uncultivated marine crenarchaeote Cenarchaeum symbiosum. Proc Natl Acad Sci USA 103:18296-18301 (Pubitemid 44871652)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.48
, pp. 18296-18301
-
-
Hallam, S.J.1
Konstantinidis, K.T.2
Putnam, N.3
Schleper, C.4
Watanabe, Y.-I.5
Sugahara, J.6
Preston, C.7
De La Torre, J.8
Richardson, P.M.9
DeLong, E.F.10
-
17
-
-
33646260901
-
Pathways of carbon assimilation and ammonia-oxidation suggested by environmental genomic analyses of marine Crenarchaeota
-
Hallam SJ, Mincer TJ, Schleper C, Preston CM, Roberts K, Richardson PM, DeLong EF(2006b) Pathways of carbon assimilation and ammonia-oxidation suggested by environmental genomic analyses of marine Crenarchaeota. PLoS Biol 4:e95
-
(2006)
PLoS Biol
, vol.4
-
-
Hallam, S.J.1
Mincer, T.J.2
Schleper, C.3
Preston, C.M.4
Roberts, K.5
Richardson, P.M.6
Delong, E.F.7
-
18
-
-
34547686149
-
Environ Microbiol
-
He J-Z, Shen J-P,Zhang L-M, Zhu Y-G, Zheng Y-M, Xu M-G, Di M.(2007) Quantitative analyses of the abundance and composition of ammonia-oxidizing bacteria and ammonia-oxidizing archaea of a Chinese upland red soil under long-term fertilization practices. Environ Microbiol 9: 2364-2374
-
(2007)
Quantitative Analyses of the Abundance and Composition of Ammonia-oxidizing Bacteria and Ammonia-oxidizing Archaea of A Chinese Upland Red Soil under Long-term Fertilization Practices
, vol.9
, pp. 2364-2374
-
-
He, J.-Z.1
Shen, J.-P.2
Zhang, L.-M.3
Zhu, Y.-G.4
Zheng, Y.-M.5
Xu Di, -G.M.M.6
-
19
-
-
0035144174
-
Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR
-
DOI 10.1128/AEM.67.2.972-976.2001
-
Hermansson A, Lindgren PE(2001) Quantification of ammonia-oxidizing bacteria in arable soil by real-time PCR. Appl Environ Microbiol 67:972-976 (Pubitemid 32121396)
-
(2001)
Applied and Environmental Microbiology
, vol.67
, Issue.2
, pp. 972-976
-
-
Hermansson, A.1
Lindgren, P.-E.2
-
20
-
-
0027077317
-
Impact of bioroughness on interfacial solute exchange in permeable sediments
-
Huettel M, Gust G(1992) Impact of bioroughness on interfacial solute exchange in permeable sediments. Mar Ecol Prog Ser 89:253-267 (Pubitemid 23382327)
-
(1992)
Marine Ecology Progress Series
, vol.89
, Issue.2-3
, pp. 253-267
-
-
Huettel, M.1
Gust, G.2
-
21
-
-
8344250319
-
An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments
-
DOI 10.1016/j.femsec.2004.06.015, PII S0168649604002259
-
Ishii K, Mussmann M, MacGregor BJ, Amann R(2004) An improved fluorescence in situ hybridization protocol for the identification of bacteria and archaea in marine sediments. FEMS Microbiol Ecol 50:203-213 (Pubitemid 39480728)
-
(2004)
FEMS Microbiology Ecology
, vol.50
, Issue.3
, pp. 203-212
-
-
Ishii, K.1
Mussmann, M.2
MacGregor, B.J.3
Amann, R.4
-
22
-
-
25644435673
-
Isolation of an autotrophic ammonia-oxidizing marine archaeon
-
DOI 10.1038/nature03911, PII N03911
-
Könneke M, Bernhard AE, de la Torre JR, Walker CB, Waterbury JB, Stahl DA(2005) Isolation of an autotrophic ammonia-oxidizing marine archaeon. Nature 437:543-546 (Pubitemid 41613550)
-
(2005)
Nature
, vol.437
, Issue.7058
, pp. 543-546
-
-
Konneke, M.1
Bernhard, A.E.2
De La Torre, J.R.3
Walker, C.B.4
Waterbury, J.B.5
Stahl, D.A.6
-
23
-
-
0036139211
-
MEGA2: Molecular evolutionary genetics analysis software
-
Kumar S, Tamura K, Jakobsen IB, Nei M(2001) Mega 2: molecular evolutionary genetics analysis software. Bioinformatics Appl Notes 17:1244-1245 (Pubitemid 33735359)
-
(2001)
Bioinformatics
, vol.17
, Issue.12
, pp. 1244-1245
-
-
Kumar, S.1
Tamura, K.2
Jakobsen, I.B.3
Nei, M.4
-
24
-
-
0027398991
-
Competition for limiting amounts of oxygen between Nitrosomonas europaea and Nitrobacter winogradskyi grown in mixed continuous cultures
-
Laanbroek HJ, Gerards S(1993) Competition for limiting amounts of oxygen between Nitrosomonas europaea and Nitrobacter winogradskyi grown in mixed continuous culture. Arch Microbiol 159:453-459 (Pubitemid 23113714)
-
(1993)
Archives of Microbiology
, vol.159
, Issue.5
, pp. 453-459
-
-
Laanbroek, H.J.1
Gerards, S.2
-
25
-
-
34249862426
-
Linking crenarchaeal and bacterial nitrification to anammox in the Black Sea
-
DOI 10.1073/pnas.0611081104
-
Lam P, Jensen MM, Lavik G, McGinnis DF and others(2007) Linking crenarchaeal and bacterial nitrification to anammo × in the Black Sea. Proc Natl Acad Sci USA 104: 7104-7109 (Pubitemid 47186016)
-
(2007)
Proceedings of the National Academy of Sciences of the United States of America
, vol.104
, Issue.17
, pp. 7104-7109
-
-
Lam, P.1
Jensen, M.M.2
Lavik, G.3
McGinnis, D.F.4
Muller, B.5
Schubert, C.J.6
Amann, R.7
Thamdrup, B.8
Kuypers, M.M.M.9
-
26
-
-
33747479446
-
Archaea predominance among ammonia-oxidizing prokaryotes
-
Leininger S, Urich T, Schloter M, Schwark L and others(2006) Archaea predominance among ammonia-oxidizing prokaryotes. Nature 442:806-809
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
-
27
-
-
0344765523
-
Microbial community composition of wadden sea sediments as revealed by fluorescence in situ hybridization
-
Llobet-Brossa E, Rosselló-Mora R, Amann R(1998) Microbial community composition of Wadden Sea sediments as revealed by fluorescence in situ hybridization. Appl Environ Microbiol 64:2691-2696 (Pubitemid 28303320)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.7
, pp. 2691-2696
-
-
Llobet-Brossa, E.1
Rossello-Mora, R.2
Amann, R.3
-
28
-
-
0037164216
-
Community structure and activity of sulfate-reducing bacteria in an intertidal surface sediment: A multi-method approach
-
Llobet-Brossa E, Rabus R, Böttcher ME, Könneke M and others(2002) Community structure and activity of sulfate reducing bacteria in an intertidal surface sediment: a multi-method approach. Aquat Microb Ecol 29:211-226 (Pubitemid 35337324)
-
(2002)
Aquatic Microbial Ecology
, vol.29
, Issue.3
, pp. 211-226
-
-
Llobet-Brossa, E.1
Rabus, R.2
Bottcher, M.E.3
Konneke, M.4
Finke, N.5
Schramm, A.6
Meyer, R.L.7
Grotzschel, S.8
Rossello-Mora, R.9
Amann, R.10
-
29
-
-
19344365907
-
Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal
-
Magalhães CM, Joye SB, Moreira RM, Wiebe WJ, Bordalo AA(2005a) Effect of salinity and inorganic nitrogen concentrations on nitrification and denitrification rates in intertidal sediments and rocky biofilms of the Douro River estuary, Portugal. Water Res 39:1783-1794
-
(2005)
Water Res
, vol.39
, pp. 1783-1794
-
-
Magalhães, C.M.1
Joye, S.B.2
Moreira, R.M.3
Wiebe, W.J.4
Bordalo, A.A.5
-
30
-
-
25844448674
-
Inorganic nitrogen dynamics in intertidal rocky biofilms and sediments of the Douro River estuary(Portugal)
-
Magalhães CM, Wiebe WJ, Joye SB, Bordalo AA(2005b) Inorganic nitrogen dynamics in intertidal rocky biofilms and sediments of the Douro River estuary(Portugal). Estuaries 28:592-606
-
(2005)
Estuaries
, vol.28
, pp. 592-606
-
-
Magalhães, C.M.1
Wiebe, W.J.2
Joye, S.B.3
Bordalo, A.A.4
-
31
-
-
34848833482
-
Composition and activity of beta-Proteobacteria ammonia-oxidizing communities associated with intertidal rocky biofilms and sediments of the Douro River estuary, Portugal
-
DOI 10.1111/j.1365-2672.2007.03390.x
-
Magalhães CM, Bano N, Wiebe WJ, Hollibaugh JT, Bordalo AA(2007) Composition and activity of beta-proteobacteria ammonia-oxidizing communities associated with intertidal rocky biofilms and sediments of the Douro River estuary, Portugal. J Appl Microbiol 103:1239-1250 (Pubitemid 47493270)
-
(2007)
Journal of Applied Microbiology
, vol.103
, Issue.4
, pp. 1239-1250
-
-
Magalhaes, C.1
Bano, N.2
Wiebe, W.J.3
Hollibaugh, J.T.4
Bordalo, A.A.5
-
32
-
-
0030620440
-
Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara Channel
-
Massana R, Murray AE, Preston CM, DeLong EF(1997) Vertical distribution and phylogenetic characterization of marine planktonic Archaea in the Santa Barbara channel. Appl Environ Microbiol 63:50-56 (Pubitemid 27020368)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.1
, pp. 50-56
-
-
Massana, R.1
Murray, A.E.2
Preston, C.M.3
DeLong, E.F.4
-
33
-
-
0032874459
-
Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the, subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer
-
Mendum TA, Sockett RE, Hirsch PR(1999) Use of molecular and isotopic techniques to monitor the response of autotrophic ammonia-oxidizing populations of the, subdivision of the class Proteobacteria in arable soils to nitrogen fertilizer. Appl Environ Microbiol 65:4155-4162 (Pubitemid 129519879)
-
(1999)
Applied and Environmental Microbiology
, vol.65
, Issue.9
, pp. 4155-4162
-
-
Mendum, T.A.1
Sockett, R.E.2
Hirsch, P.R.3
-
34
-
-
0031763334
-
Difluoromethane, a new and improved inhibitor of methanotrophy
-
Miller LG, Sasson C, Oreland RS(1998) Difluoromethane, a new and improved inhibitor of methanotrophy. Appl Environ Microbiol 64:4357-4362 (Pubitemid 28538001)
-
(1998)
Applied and Environmental Microbiology
, vol.64
, Issue.11
, pp. 4357-4362
-
-
Miller, L.G.1
Sasson, C.2
Oremland, R.S.3
-
35
-
-
34247847886
-
Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre
-
DOI 10.1111/j.1462-2920.2007.01239.x
-
Mincer TJ, Church MJ, Taylor LT, Preston C, Karl DM, Delong EF(2007) Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific subtropical gyre. Environ Microbiol 9: 1162-1175 (Pubitemid 46697272)
-
(2007)
Environmental Microbiology
, vol.9
, Issue.5
, pp. 1162-1175
-
-
Mincer, T.J.1
Church, M.J.2
Taylor, L.T.3
Preston, C.4
Karl, D.M.5
DeLong, E.F.6
-
36
-
-
19944408938
-
Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment
-
DOI 10.1038/nature03170
-
Moran MA, Buchan A, Gonzalez JM, Heidelberg JF and others(2004) Genome sequence of Silibacter pomeroyi reveals adaptations to the marine environment. Nature 432:910-913 (Pubitemid 40037153)
-
(2004)
Nature
, vol.432
, Issue.7019
, pp. 910-913
-
-
Moran, M.A.1
Buchan, A.2
Gonzalez, J.M.3
Heidelberg, J.F.4
Whitman, W.B.5
Klene, R.P.6
Henriksen, J.R.7
King, G.M.8
Belas, R.9
Fuqua, C.10
Brinkac, L.11
Lewis, M.12
Johri, S.13
Weaver, B.14
Pai, G.15
Elsen, J.A.16
Rahe, E.17
Sheldon, W.M.18
Ye, W.19
Miller, T.R.20
Carlton, J.21
Rasko, D.A.22
Paulsen, I.T.23
Ren, Q.24
Daugherty, S.C.25
Deboy, R.T.26
Dodson, R.J.27
Durkin, A.S.28
Madupu, R.29
Nelson, W.C.30
Sullivan, S.A.31
Rosovitz, M.J.32
Haft, D.H.33
Selengut, J.34
Ward, N.35
more..
-
37
-
-
52949134066
-
Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary
-
Mosier AC, Francis CA(2008) Relative abundance and diversity of ammonia-oxidizing archaea and bacteria in the San Francisco Bay estuary. Environ Microbiol 10:3002-3016
-
(2008)
Environ Microbiol
, vol.10
, pp. 3002-3016
-
-
Mosier, A.C.1
Francis, C.A.2
-
38
-
-
0037290270
-
Mac-robenthic community in the Douro estuary: Relations with trace metals and natural sediment characteristics
-
Mucha APM, Vasconcelos TSD, Bordalo AA(2003) Mac-robenthic community in the Douro estuary: relations with trace metals and natural sediment characteristics. Environ Pollut 121:169-180
-
(2003)
Environ Pollut
, vol.121
, pp. 169-180
-
-
Apm, M.1
Tsd, V.2
Bordalo, A.A.3
-
39
-
-
1842509857
-
Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR
-
Mumy KL, Findlay RH(2004) Convenient determination of DNA extraction efficiency using an external DNA recovery standard and quantitative-competitive PCR. J Microbiol Methods 57:259-268
-
(2004)
J Microbiol Methods
, vol.57
, pp. 259-268
-
-
Mumy, K.L.1
Findlay, R.H.2
-
40
-
-
33646181371
-
Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-RømøBasin, Wadden Sea
-
Musat N, Werner U, Knittel K, Kolb S and others(2006). Microbial community structure of sandy intertidal sediments in the North Sea, Sylt-Rømø Basin, Wadden Sea. Syst Appl Microbiol 29:333-348
-
(2006)
Syst Appl Microbiol
, vol.29
, pp. 333-348
-
-
Musat, N.1
Werner, U.2
Knittel, K.3
Kolb, S.4
-
41
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G, de Waal EC, Uitterlinder AG(1993) Profiling of comple×microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59:695-700 (Pubitemid 23072343)
-
(1993)
Applied and Environmental Microbiology
, vol.59
, Issue.3
, pp. 695-700
-
-
Muyzer, G.1
De Waal, E.C.2
Uitterlinden, A.G.3
-
42
-
-
52949137846
-
The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria
-
Nicol GW, Leininger S, Schleper C, Prosser JI(2008) The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria. Environ Microbiol 10:2966-2978
-
(2008)
Environ Microbiol
, vol.10
, pp. 2966-2978
-
-
Nicol, G.W.1
Leininger, S.2
Schleper, C.3
Prosser, J.I.4
-
43
-
-
0030014717
-
The gene encoding ammonia monooxygenase subunit A exists in nearly three identical copies in Nitrosospira sp. NpAV
-
Norton JM, Low JM, Klotz MG(1996) The gene encoding ammonia monooxygenase subunit A exists in nearly three identical copies in Nitrosospira sp. NpAV. FEMS Microbiol Lett 139:181-188
-
(1996)
FEMS Microbiol Lett
, vol.139
, pp. 181-188
-
-
Norton, J.M.1
Low, J.M.2
Klotz, M.G.3
-
44
-
-
0036167265
-
Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria
-
DOI 10.1007/s00203-001-0369-z
-
Norton JM, Alzerreca JJ, Suwa Y, Klotz MG(2002) Diversity of ammonia monooxygenase operon in autotrophic ammonia-oxidizing bacteria. Arch Microbiol 177:139-149 (Pubitemid 34143413)
-
(2002)
Archives of Microbiology
, vol.177
, Issue.2
, pp. 139-149
-
-
Norton, J.M.1
Alzerreca, J.J.2
Suwa, Y.3
Klotz, M.G.4
-
45
-
-
2342655672
-
Application of Real-Time PCR to Study Effects of Ammonium on Population Size of Ammonia-Oxidizing Bacteria in Soil
-
DOI 10.1128/AEM.70.2.1008-1016.2004
-
Okano Y, Hristova KR, Leutenegger CM, Jackson LE and others(2004) Application of real-time PCR to study effects of ammonium on population size of ammonia-oxidizing bacteria in soil. Appl Environ Microbiol 70:1008-1016 (Pubitemid 38568227)
-
(2004)
Applied and Environmental Microbiology
, vol.70
, Issue.2
, pp. 1008-1016
-
-
Okano, Y.1
Hristova, K.R.2
Leutenegger, C.M.3
Jackson, L.E.4
Denison, R.F.5
Gebreyesus, B.6
Lebauer, D.7
Scow, K.M.8
-
46
-
-
33747341311
-
Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors
-
DOI 10.1128/AEM.00402-06
-
Park HD, Wells GF, Bae H, Criddle CS, Francis CA(2006) Occurrence of ammonia-oxidizing archaea in wastewater treatment plant bioreactors. Appl Environ Microbiol 72:5643-5647 (Pubitemid 44242424)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.8
, pp. 5643-5647
-
-
Park, H.-D.1
Wells, G.F.2
Bae, H.3
Griddle, C.S.4
Francis, C.A.5
-
47
-
-
84986870589
-
The use of DAPI for identifying and counting aquatic microflora
-
Porter KG, Feig YS(1980) The use of DAPI for identifying and counting aquatic microflora. Limnol Oceanogr 25:943-948
-
(1980)
Limnol Oceanogr
, vol.25
, pp. 943-948
-
-
Porter, K.G.1
Feig, Y.S.2
-
48
-
-
0030814870
-
The ammonia monooxygenase structural gene amoa as a functional marker: Molecular fine-scale analysis of natural ammonia-oxidizing populations
-
Rotthauwe JH, Witzel KP, Liesack W(1997) The ammonia monooxygenase structural gene amoA as a functional marker: molecular fine-scale analysis of natural ammonia-oxidizing populations. Appl Environ Microbiol 63: 4704-4712 (Pubitemid 27524201)
-
(1997)
Applied and Environmental Microbiology
, vol.63
, Issue.12
, pp. 4704-4712
-
-
Rotthauwe, J.-H.1
Witzel, K.-P.2
Liesack, W.3
-
49
-
-
0034888194
-
Bacteria, diatoms and detritus in an intertidal sandflat subject to advective transport across the water-sediment interface
-
DOI 10.1023/A:1010687322291
-
Rusch A, Huettel M, Reimers CE, Taghon GL, Fuller CM(2001) Bacteria, diatoms and detritus in an intertidal sand-flat subjected to advective transport across the water-sediment interface. Biogeochemistry 55:1-27 (Pubitemid 32773888)
-
(2001)
Biogeochemistry
, vol.55
, Issue.1
, pp. 1-27
-
-
Rusch, A.1
Forster, S.2
Huettel, M.3
-
50
-
-
0042884058
-
Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands
-
DOI 10.1016/S0168-6496(02)00458-0, PII S0168649602004580
-
Rusch A, Huettel M, Reimers CE, Taghon GL, Fuller CM(2003) Activity and distribution of bacterial populations in Middle Atlantic Bight shelf sands. FEMS Microbiol Ecol 44:89-100 (Pubitemid 37034603)
-
(2003)
FEMS Microbiology Ecology
, vol.44
, Issue.1
, pp. 89-100
-
-
Rusch, A.1
Huettel, M.2
Reimers, C.E.3
Taghon, G.L.4
Fuller, C.M.5
-
51
-
-
0032493132
-
Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments (Svalbard, Arctic Ocean)
-
Sahm K, Berninger UG(1998) Abundance, vertical distribution, and community structure of benthic prokaryotes from permanently cold marine sediments(Svalbard, Arctic Ocean). Mar Ecol Prog Ser 165:71-80 (Pubitemid 28226715)
-
(1998)
Marine Ecology Progress Series
, vol.165
, pp. 71-80
-
-
Sahm, K.1
Berninger, U.-G.2
-
52
-
-
40949097432
-
Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary
-
Santoro AE, Francis CA, de Sieyes NR, Boehm BB(2008) Shifts in the relative abundance of ammonia-oxidizing bacteria and archaea across physicochemical gradients in a subterranean estuary. Environ Microbiol 10: 1068-1079
-
(2008)
Environ Microbiol
, vol.10
, pp. 1068-1079
-
-
Santoro, A.E.1
Francis, C.A.2
De Sieyes, N.R.3
Boehm, B.B.4
-
53
-
-
0034123129
-
Relative abundance of Archaea and Bacteria along a thermal gradient of a shallow-water hydrothermal vent quantified by rRNA slot-blot hybridization
-
Sievert SM, Ziebis W, Kuever J, Sahm K(2000) Relative abundance of Archaea and Bacteria along a thermal gradient of a shallow-water hydrothermal vent quantified by rRNA slot-blot hybridization. Microbiol 146:1287-1293 (Pubitemid 30364720)
-
(2000)
Microbiology
, vol.146
, Issue.6
, pp. 1287-1293
-
-
Sievert, S.M.1
Ziebis, W.2
Kuever, J.3
Sahm, K.4
-
54
-
-
0000920641
-
Growth of Nitrosomonas europaea in batch continuous culture
-
Skinner FA, Walker N(1961) Growth of Nitrosomonas europaea in batch continuous culture. Arch Microbiol 38:339-349
-
(1961)
Arch Microbiol
, vol.38
, pp. 339-349
-
-
Skinner, F.A.1
Walker, N.2
-
55
-
-
0033760479
-
Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5́-nuclease assays
-
Suzuki MT, Taylor LT, DeLong EF(2000) Quantitative analysis of small-subunit rRNA genes in mixed microbial populations via 5́-nuclease assays. Appl Environ Microbiol 66:4605-4614
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 4605-4614
-
-
Suzuki, M.T.1
Taylor, L.T.2
Delong, E.F.3
-
56
-
-
0027968068
-
Clustal W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matri×choice
-
Thompson JD, Higgins DG, Gibson TJ(1994) Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matri×choice. Nucleic Acids Res 22:4673-4680
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
57
-
-
33645459365
-
Characterization and quantification of ammonia-oxidizing bacteria in eutrophic coastal marine sediments using polyphasic molecular approaches and immunofluorescence staining
-
Urakawa H, Kurata S, Fujiwara T, Kuroiwa D and others(2006a) Characterization and quantification of ammonia-oxidizing bacteria in eutrophic coastal marine sediments using polyphasic molecular approaches and immunofluorescence staining. Environ Microbiol 8:787-803
-
(2006)
Environ Microbiol
, vol.8
, pp. 787-803
-
-
Urakawa, H.1
Kurata, S.2
Fujiwara, T.3
Kuroiwa, D.4
-
58
-
-
33750048742
-
Abundance and population structure of ammonia-oxidizing bacteria that inhabit canal sediments receiving effluents from municipal wastewater treatment plants
-
DOI 10.1128/AEM.00807-06
-
Urakawa H, Maki H, Kawabata S, ujiwara T and others(2006b) Abundance and population structure of ammonia-oxidizing bacteria that inhabit canal sediments receiving effluents from municipal wastewater treatment plants. Appl Environ Microbiol 72:6845-6850 (Pubitemid 44582934)
-
(2006)
Applied and Environmental Microbiology
, vol.72
, Issue.10
, pp. 6845-6850
-
-
Urakawa, H.1
Maki, H.2
Kawabata, S.3
Fujiwara, T.4
Ando, H.5
Kawai, T.6
Hiwatari, T.7
Kohata, K.8
Watanabe, M.9
-
59
-
-
0033679726
-
The Douro estuary(Portugal): A mesotidal salt wedge
-
Vieira MEC, Bordalo AA(2000) The Douro estuary(Portugal): a mesotidal salt wedge. Oceanol Acta 23:585-594
-
(2000)
Oceanol Acta
, vol.23
, pp. 585-594
-
-
Mec, V.1
Bordalo, A.A.2
-
60
-
-
0023495837
-
Nitrogen transformations in the Southern California Bight
-
Ward BB(1987) Nitrogen transformations in the Southern California Bight. Deep-Sea Res 34:785-805
-
(1987)
Deep-Sea Res
, vol.34
, pp. 785-805
-
-
Ward, B.B.1
-
61
-
-
0024933887
-
Chemoautotrophic activity and nitrification in the oxygen minimum zone off Peru
-
Ward BB, Glover HE, Lipschultz F(1989) Chemoautotrophic activity and nitrification in the oxygen minimum zone off Peru. Deep-Sea Res 36:1031-1051
-
(1989)
Deep-Sea Res
, vol.36
, pp. 1031-1051
-
-
Ward, B.B.1
Glover, H.E.2
Lipschultz, F.3
-
62
-
-
33747596691
-
Archaeal nitrification in the ocean
-
DOI 10.1073/pnas.0600756103
-
Wuchter C, Abbas B, Coolen MJL, Herfort L and others(2006) Archaeal nitrification in the ocean. Proc Natl Acad Sci USA 103:12317-12322 (Pubitemid 44267257)
-
(2006)
Proceedings of the National Academy of Sciences of the United States of America
, vol.103
, Issue.33
, pp. 12317-12322
-
-
Wuchter, C.1
Abbas, B.2
Coolen, M.J.L.3
Herfort, L.4
Van Bleijswijk, J.5
Timmers, P.6
Strous, M.7
Teira, E.8
Herndl, G.J.9
Middelburg, J.J.10
Schouten, S.11
Damste, J.S.S.12
-
63
-
-
51649123143
-
High bacterivory by the smallest phytoplankton in the North Atlantic Ocean
-
Zubkov MV, Tarran GA(2008) High bacterivory by the smallest phytoplankton in the North Atlantic Ocean. Nature 455:224-226
-
(2008)
Nature
, vol.455
, pp. 224-226
-
-
Zubkov, M.V.1
Tarran, G.A.2
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