Studies on the host range of the barley strain of Wheat dwarf virus using an agroinfectious viral clone

Plant Pathology

Volumn 58, Issue 6, 2009, Pages 1161-1169

  Ramsell, J N E ^a,e   Boulton, M I ^b   Martin, D P ^c   Valkonen, J P T ^d   Kvarnheden, A ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

^b JOHN INNES CENTRE   (United Kingdom)

^c UNIVERSITY OF CAPE TOWN   (South Africa)

^d UNIVERSITY OF HELSINKI   (Finland)

^e NORWEGIAN VETERINARY INSTITUTE   (Norway)

Author keywords

Agroinoculation; Geminivirus; Mastrevirus; Phylogeny; Recombination; Strain

Indexed keywords

BARLEY; COMPARATIVE STUDY; CULTIVAR; GENETIC ANALYSIS; HOST RANGE; INOCULATION; PHYLOGENY; PLANTHOPPER; RECOMBINATION; SYMPTOM; VIRAL DISEASE; VIRULENCE; WHEAT;

EURASIA; EUROPE;

AVENA SATIVA; GEMINIVIRIDAE; HORDEUM; HORDEUM VULGARE; MASTREVIRUS; SECALE CEREALE; TRITICUM AESTIVUM; WHEAT DWARF VIRUS;

EID: 68749096103     PISSN: 00320862     EISSN: 13653059     Source Type: Journal    
DOI: 10.1111/j.1365-3059.2009.02146.x     Document Type: Article

References (53)

1. Bendahmane M, Schalk J, Gronenborn B, 1995. Identification and characterization of wheat dwarf virus from France using a rapid method for geminivirus DNA preparation. Phytopathology 85, 1449 1455.
2. Bisztray G, Gáborjányi G, 1989. Isolation and characterisation of wheat dwarf virus found for the first time in Hungary. Journal of Plant Diseases and Protection 96, 449 454.
3. Boni MF, Posada D, Feldman MW, 2007. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 176, 1035 1047.
4. Boulton MI, 2002. Functions and interactions of mastrevirus gene products. Physiological and Molecular Plant Pathology 60, 243 255.
5. Boulton MI, 2008. Construction of infectious clones for DNA viruses: mastreviruses. In : Foster GD, Johansen IE, Hong Y, Nagy PD, eds. Methods in Molecular Biology: Plant Virology Protocols. Totowa, NJ, USA : Humana Press, 503 523.
6. Boulton MI, Steinkellner H, Donson J, Markham PG, King D, Davies JW, 1989. Mutational analysis of the virion-sense genes of maize streak virus. Journal of General Virology 70, 2309 2323.
7. Commandeur U, Huth W, 1999. Differentiation of strains of wheat dwarf virus in infected wheat and barley plants by means of polymerase chain reaction. Journal of Plant Diseases and Protection 106, 550 552.
8. Fauquet CM, Briddon RW, Brown JK et al., 2008. Geminivirus strain demarcation and nomenclature. Archives of Virology 153, 783 821.
9. Gibbs MJ, Armstrong JS, Gibbs AJ, 2000. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 16, 573 582.
10. Grimsley N, Hohn B, Hohn T, Walsder R, 1986. "Agroinfection," an alternative route for viral infection of plants by using the Ti plasmid. Proceedings of the National Academy of Sciences, USA 83, 3282 3286.
11. Grimsley N, Hohn T, Davies JW, Hohn B, 1987. Agrobacterium-mediated delivery of infectious maize streak virus into maize plants. Nature 325, 177 179.
12. Guindon S, Gascuel O, 2003. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology 52, 696 704.
13. Haible D, Kober S, Jeske H, 2006. Rolling circle amplification revolutionizes diagnosis and genomics of geminiviruses. Journal of Virological Methods 135, 9 16.
14. Hajdukiewicz P, Svab Z, Maliga P, 1994. The small, versatile pPZP family of Agrobacterium binary vectors for plant transformation. Plant Molecular Biology 25, 989 994.
15. Hayes RJ, Macdonald H, Coutts RHA, Buck KW, 1988. Agroinfection of Triticum aestivum with cloned DNA of wheat dwarf virus. Journal of General Virology 69, 891 896.
16. Heyraud F, Matzeit V, Schaefer S, Schell J, Gronenborn B, 1993. The conserved nonanucleotide motif of the geminivirus stem-loop sequence promotes replicational release of virus molecules from redundant copies. Biochimie 75, 605 615.
17. Kapooria RG, Ndunguru J, 2004. Occurrence of viruses in irrigated wheat in Zambia. EPPO Bulletin 34, 413 419.
18. Köklü G, Ramsell JNE, Kvarnheden A, 2007. The complete genome sequence for a Turkish isolate of Wheat dwarf virus (WDV) from barley confirms the presence of two distinct WDV strains. Virus Genes 34, 359 366.
19. Kumar S, Tamura K, Nei M, 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5, 150 163.
20. Kvarnheden A, Lindblad M, Lindsten K, Valkonen JPT, 2002. Genetic diversity of Wheat dwarf virus. Archives of Virology 147, 205 216.
21. Lazo GR, Stein PA, Ludwig RA, 1991. A DNA transformation-competent Arabidopsis genomic library in Agrobacterium. Bio/Technology 9, 963 967.
22. Lemmetty A, Huusela-Veistola E, 2005. First report of Wheat dwarf virus in winter wheat in Finland. Plant Disease 89, 912.
23. Lindsten K, Lindsten B, 1999. Wheat dwarf - an old disease with new outbreaks in Sweden. Journal of Plant Diseases and Protection 106, 325 332.
24. Lindsten K, Vacke J, 1991. A possible barley adapted strain of wheat dwarf virus (WDV). Acta Phytopathologica et Entomologica Hungarica 26, 175 180.
25. Lindsten K, Lindsten B, Abdelmoeti M, Junti N, 1980. Purification and some properties of wheat dwarf virus. In: Proceedings of the 3rd Conference on Virus Diseases of Graminae in Europe 1980, Rothamsted, UK. 27 34.
26. Liu L, van Tonder T, Pietersen G, Davies JW, Stanley J, 1997. Molecular characterization of a subgroup I geminivirus from a legume in South Africa. Journal of General Virology 78, 2113 2117.
27. MacDowell SW, Macdonald H, Hamilton WDO, Coutts RHA, Buck KW, 1985. The nucleotide sequence of cloned wheat dwarf virus DNA. The EMBO Journal 9, 2173 2180.
28. Martin DP, Rybicki EP, 2000. RDP: detection of recombination amongst aligned sequences. Bioinformatics 16, 562 563.
29. Martin DP, Rybicki EP, 2002. Investigation of Maize streak virus pathogenicity determinants using chimaeric genomes. Virology 300, 180 188.
30. Martin DP, Willment JA, Billharz R et al., 2001. Sequence diversity and virulence in Zea mays of Maize streak virus isolates. Virology 288, 247 255.
31. Martin DP, Posada D, Crandall KA, Williamson C, 2005a. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Research and Human Retroviruses 21, 98 102.
32. Martin DP, Williamson C, Posada D, 2005b. RDP2: recombination detection and analysis from sequence alignments. Bioinformatics 21, 260 262.
33. Mehner S, 2005. Zur Ökologie des Wheat dwarf virus (WDV) in Sachsen-Anhalt. Halle, Germany : Martin-Luther-University, PhD thesis.
34. Morris BA, Richardson KA, Haley A, Zhan X, Thomas JE, 1992. The nucleotide sequence of the infectious cloned DNA component of tobacco yellow dwarf virus reveals features of geminiviruses infecting monocotyledonous plants. Virology 187, 633 642.
35. Najar A, Makkouk KM, Boudhir H et al., 2000. Viral diseases of cultivated legume and cereal crops in Tunisia. Phytopathologia Mediterranea 39, 423 432.
36. Padidam M, Sawyer S, Fauquet CM, 1999. Possible emergence of new geminiviruses by frequent recombination. Virology 265, 218 225.
37. Ramsell JNE, Lemmetty A, Jonasson J, Andersson A, Sigvald R, Kvarnheden A, 2008. Sequence analyses of Wheat dwarf virus isolates from different hosts reveal low genetic diversity within the wheat strain. Plant Pathology 57, 834 841.
38. Redinbaugh MG, Louise R, Ngwira P, Edema R, Gordon DT, Bisaro DM, 2001. Transmission of viral RNA and DNA to maize kernels by vascular puncture inoculation. Journal of Virological Methods 98, 135 143.
39. Sambrook J, Russell DW, 2001. Molecular Cloning: a Laboratory Manual. New York, USA : Cold Spring Harbour Laboratory Press.
40. Schnippenkoetter WH, Martin DP, Willment JA, Rybicki EP, 2001. Forced recombination between distinct strains of Maize streak virus. Journal of General Virology 82, 3081 3090.
41. Schubert J, Habekuß A, Kazmaier K, Jeske H, 2007. Surveying cereal-infecting geminiviruses in Germany - diagnostics and direct sequencing using rolling circle amplification. Virus Research 127, 61 70.
42. Shepherd DN, Varsani A, Windram OP et al., 2008. Novel sugarcane streak and sugarcane streak Reunion mastreviruses from southern Africa and La Réunion. Archives of Virology 153, 605 609.
43. Smith JM, 1992. Analyzing the mosaic structure of genes. Journal of Molecular Evolution 34, 126 129.
44. Stenger DC, Revington GN, Stevenson MC, Bisaro DM, 1991. Replicational release of geminivirus genomes from tandemly repeated copies: evidence for rolling-circle replication of a plant viral DNA. Proceedings of the National Academy of Sciences, USA 88, 8029 8033.
45. Thompson JD, Higgins DG, Gibson TJ, 1994. Clustal W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673 4680.
46. Tóbiás I, Kiss B, Palkovics L, 2006. The nucleotide sequence of two Hungarian isolates of Wheat dwarf virus. Acta Phytopathologica et Entomologica Hungarica 41, 47 52.
47. Vacke J, 1961. Wheat dwarf virus disease. Biologica Plantarum Praha 3, 228 233.
48. Vacke J, 1972. Host plants range and symptoms of wheat dwarf virus. Výzkumných Ústavú Rostlinné Výroby Praha-Ruzyně 17, 151 162.
49. Varsani A, Oluwafemi S, Windram OP et al., 2008. Panicum streak virus diversity is similar to that observed for maize streak virus. Archives of Virology 153, 601 604.
50. Wang XF, Wu B, Wang JF, 2008. First report of Wheat dwarf virus infecting barley in Yunnan, China. Journal of Plant Pathology 90, 400.
51. Woolston CJ, Barker R, Gunn H, Boulton MI, Mullineaux PM, 1988. Agroinfection and nucleotide-sequence of cloned wheat dwarf virus-DNA. Plant Molecular Biology 11, 35 43.
52. Wu B, Melcher U, Guo X, Wang X, Fan L, Zhou G, 2008. Assessment of codivergence of mastreviruses with their plant hosts. BMC Evolutionary Biology 8, 335.
53. Xie J, Wang X, Liu Y, Peng Y, Zhou G, 2007. First report of the occurrence of Wheat dwarf virus in wheat in China. Plant Disease 91, 111.