메뉴 건너뛰기




Volumn 25, Issue 16, 2009, Pages 1999-2005

Copy number variation has little impact on bead-array-based measures of DNA methylation

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 68549135349     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btp364     Document Type: Article
Times cited : (31)

References (27)
  • 1
    • 33644649616 scopus 로고    scopus 로고
    • High-throughput DNA methylation profiling using universal bead arrays
    • Bibikova,M., et al. (2006) High-throughput DNA methylation profiling using universal bead arrays. Genome Res., 16, 383-393.
    • (2006) Genome Res , vol.16 , pp. 383-393
    • Bibikova, M.1
  • 2
    • 10744230160 scopus 로고    scopus 로고
    • High-resolution analysis of DNA copy number using oligonucleotide microarrays
    • Bignell,G.R., et al. (2004) High-resolution analysis of DNA copy number using oligonucleotide microarrays. Genome Res., 14, 287-295.
    • (2004) Genome Res , vol.14 , pp. 287-295
    • Bignell, G.R.1
  • 3
    • 33749039999 scopus 로고    scopus 로고
    • Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation
    • Cadieux,B., et al. (2006) Genome-wide hypomethylation in human glioblastomas associated with specific copy number alteration, methylenetetrahydrofolate reductase allele status, and increased proliferation. Cancer Res., 66, 8469-8476.
    • (2006) Cancer Res , vol.66 , pp. 8469-8476
    • Cadieux, B.1
  • 4
    • 46749150503 scopus 로고    scopus 로고
    • Asbestos burden predicts survival in pleural mesothelioma
    • Christensen,B.C., et al. (2008) Asbestos burden predicts survival in pleural mesothelioma. Environ. Health Perspect., 116, 723-726.
    • (2008) Environ. Health Perspect , vol.116 , pp. 723-726
    • Christensen, B.C.1
  • 5
    • 33847262934 scopus 로고    scopus 로고
    • Bioinformatics approaches in the study of cancer
    • Hanauer,D.A., et al. (2007) Bioinformatics approaches in the study of cancer. Curr. Mol. Med., 7, 133-141.
    • (2007) Curr. Mol. Med , vol.7 , pp. 133-141
    • Hanauer, D.A.1
  • 6
    • 52949118548 scopus 로고    scopus 로고
    • Model-based clustering of DNA methylation array data: A recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions
    • Houseman,E.A., et al. (2008) Model-based clustering of DNA methylation array data: A recursive-partitioning algorithm for high-dimensional data arising as a mixture of beta distributions. BMC Bioinform., 9, 365.
    • (2008) BMC Bioinform , vol.9 , pp. 365
    • Houseman, E.A.1
  • 7
    • 33846619807 scopus 로고    scopus 로고
    • Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma
    • Hsiung,D., et al. (2007) Global DNA methylation level in whole blood as a biomarker in head and neck squamous cell carcinoma. Cancer Epidemiol. Biomarkers Prev., 16, 108-114.
    • (2007) Cancer Epidemiol. Biomarkers Prev , vol.16 , pp. 108-114
    • Hsiung, D.1
  • 8
    • 10844232112 scopus 로고    scopus 로고
    • Whole genome DNA copy number changes identified by high density oligonucleotide arrays
    • Huang,J., et al. (2004) Whole genome DNA copy number changes identified by high density oligonucleotide arrays. Human Genom., 1, 287-299.
    • (2004) Human Genom , vol.1 , pp. 287-299
    • Huang, J.1
  • 10
    • 43149098062 scopus 로고    scopus 로고
    • Comprehensive high-throughput arrays for relative methylation (CHARM)
    • Irizarry,R.A., et al. (2008) Comprehensive high-throughput arrays for relative methylation (CHARM). Genome Res., 18, 780-790.
    • (2008) Genome Res , vol.18 , pp. 780-790
    • Irizarry, R.A.1
  • 11
    • 0036274359 scopus 로고    scopus 로고
    • The fundamental role of epigenetic events in cancer
    • Jones,P.A. and Baylin,S.B. (2002) The fundamental role of epigenetic events in cancer. Nature Rev., 3, 415-428.
    • (2002) Nature Rev , vol.3 , pp. 415-428
    • Jones, P.A.1    Baylin, S.B.2
  • 12
    • 16544376975 scopus 로고    scopus 로고
    • The Cancer Biomedical Informatics Grid (caBIG): Pioneering an expansive network of information and tools for collaborative cancer research
    • Kakazu,K.K., et al. (2004) The Cancer Biomedical Informatics Grid (caBIG): Pioneering an expansive network of information and tools for collaborative cancer research. Hawaii Med. J., 63, 273-275.
    • (2004) Hawaii Med. J , vol.63 , pp. 273-275
    • Kakazu, K.K.1
  • 13
    • 55849099654 scopus 로고    scopus 로고
    • Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers
    • Leary,R.J., et al. (2008) Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers. Proc. Natl Acad. Sci. USA, 105, 16224-16229.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 16224-16229
    • Leary, R.J.1
  • 14
    • 0141557460 scopus 로고    scopus 로고
    • Algorithms for large-scale genotyping microarrays
    • Liu,W.M., et al. (2003) Algorithms for large-scale genotyping microarrays. Bioinformatics, 19, 2397-2403.
    • (2003) Bioinformatics , vol.19 , pp. 2397-2403
    • Liu, W.M.1
  • 15
    • 33748924290 scopus 로고    scopus 로고
    • Comprehensive assessment of DNA copy number alterations in human prostate cancers using Affymetrix 100K SNP mapping array
    • Liu,W., et al. (2006) Comprehensive assessment of DNA copy number alterations in human prostate cancers using Affymetrix 100K SNP mapping array. Genes Chromosomes Cancer, 45, 1018-1032.
    • (2006) Genes Chromosomes Cancer , vol.45 , pp. 1018-1032
    • Liu, W.1
  • 16
    • 33748495116 scopus 로고    scopus 로고
    • Epigenetic inactivation of the SFRP genes is associated with drinking, smoking and HPV in head and neck squamous cell carcinoma
    • Marsit,C.J., et al. (2006) Epigenetic inactivation of the SFRP genes is associated with drinking, smoking and HPV in head and neck squamous cell carcinoma. Int. J. Cancer, 119, 1761-1766.
    • (2006) Int. J. Cancer , vol.119 , pp. 1761-1766
    • Marsit, C.J.1
  • 17
    • 53649088131 scopus 로고    scopus 로고
    • Applications of next-generation sequencing technologies in functional genomics
    • Morozova,O. and Marra,M.A. (2008) Applications of next-generation sequencing technologies in functional genomics. Genomics, 92 255-264.
    • (2008) Genomics , vol.92 , pp. 255-264
    • Morozova, O.1    Marra, M.A.2
  • 18
    • 33845451529 scopus 로고    scopus 로고
    • Resources for integrative systems biology: From data through databases to networks and dynamic system models
    • Ng,A., et al. (2006) Resources for integrative systems biology: from data through databases to networks and dynamic system models. Briefings Bioinform., 7, 318-330.
    • (2006) Briefings Bioinform , vol.7 , pp. 318-330
    • Ng, A.1
  • 19
    • 52949127312 scopus 로고    scopus 로고
    • An integrated genomic analysis of human glioblastoma multiforme
    • Parsons,D.W., et al. (2008) An integrated genomic analysis of human glioblastoma multiforme. Science, 321, 1807-1812.
    • (2008) Science , vol.321 , pp. 1807-1812
    • Parsons, D.W.1
  • 20
    • 0001620867 scopus 로고
    • A resampling method based on pivotal estimating functions
    • Parzen,M.I., et al. (1994) A resampling method based on pivotal estimating functions. Biometrika, 81, 341-350.
    • (1994) Biometrika , vol.81 , pp. 341-350
    • Parzen, M.I.1
  • 21
    • 35748932852 scopus 로고    scopus 로고
    • R Development Core Team, R Foundation for Statistical Computing, Vienna, Austria
    • R Development Core Team. (2007) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria.
    • (2007) R: A Language and Environment for Statistical Computing
  • 22
    • 43949091796 scopus 로고    scopus 로고
    • Lung cancer epigenetics and genetics
    • Risch,A. and Plass,C. (2008) Lung cancer epigenetics and genetics. Int. J. Cancer, 123, 1-7.
    • (2008) Int. J. Cancer , vol.123 , pp. 1-7
    • Risch, A.1    Plass, C.2
  • 23
    • 32844471766 scopus 로고    scopus 로고
    • Microarray tools for deciphering complex diseases
    • Shai,R.M. (2006) Microarray tools for deciphering complex diseases. Front. Biosci., 11, 1414-1424.
    • (2006) Front. Biosci , vol.11 , pp. 1414-1424
    • Shai, R.M.1
  • 24
    • 33749993417 scopus 로고    scopus 로고
    • The consensus coding sequences of human breast and colorectal cancers
    • Sjoblom,T., et al. (2006) The consensus coding sequences of human breast and colorectal cancers. Science, 314, 268-274.
    • (2006) Science , vol.314 , pp. 268-274
    • Sjoblom, T.1
  • 25
    • 42149162212 scopus 로고    scopus 로고
    • Transcriptome sequencing of malignant pleural mesothelioma tumors
    • Sugarbaker,D.J., et al. (2008) Transcriptome sequencing of malignant pleural mesothelioma tumors. Proc. Natl Acad. Sci. USA, 105, 3521-3526.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 3521-3526
    • Sugarbaker, D.J.1
  • 26
    • 36248962105 scopus 로고    scopus 로고
    • The genomic landscapes of human breast and colorectal cancers
    • Wood,L.D., et al. (2007) The genomic landscapes of human breast and colorectal cancers. Science, 318, 1108-1113.
    • (2007) Science , vol.318 , pp. 1108-1113
    • Wood, L.D.1
  • 27
    • 36549054355 scopus 로고    scopus 로고
    • Integrative oncogenomic approaches for accelerated cancer-gene discovery
    • Zender,L. and Lowe,S.W. (2008) Integrative oncogenomic approaches for accelerated cancer-gene discovery. Curr. Opin. Oncol., 20, 72-76.
    • (2008) Curr. Opin. Oncol , vol.20 , pp. 72-76
    • Zender, L.1    Lowe, S.W.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.