Development of microsatellite markers in Sea Perch, lateolabrax japonicus, from codominant amplified fragment length polymorphism bands

Journal of the World Aquaculture Society

Volumn 40, Issue 4, 2009, Pages 522-530

  Liu, Yuna Guo ^a,b   Liu, Chun Ying ^c   Li, Fang Zheng ^c   Li, Zhao Xia ^c   Wang, Lei ^d  

^a OCEAN UNIVERSITY OF CHINA   (China)

^b Shandong Entry Exit Inspection and Quarantine Bureau   (China)

^c QINGDAO AGRICULTURAL UNIVERSITY   (China)

^d LUDONG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AQUACULTURE; BIOMARKER; EQUILIBRIUM; FISH; HETEROZYGOSITY; MARKOV CHAIN; MICROSTRUCTURE; POLYMORPHISM;

LATEOLABRAX JAPONICUS; LUTJANIDAE;

EID: 68349157446     PISSN: 08938849     EISSN: 17497345     Source Type: Journal    
DOI: 10.1111/j.1749-7345.2009.00277.x     Document Type: Article

References (32)

1. Armour, J. A., R. Neumann, S. Gobert, and A. J. Jeffreys. 1994. Isolation of human simple repeat loci by hybridization selection. Human Molecular Genetics 3:599-565.
2. Bradeen, J. M., and P. W. Simon. 1998. Conversion of an AFLP fragment linked to the carrot Y2 locus to a simple codominant PCR-based marker form. Theoretical and Applied Genetics 97:960-967.
3. Cifarelli, R. A., M. Gallitelli, and F. Cellini. 1995. Random amplified hybridization microsatellites (RAHM): Isolation of a new class of microsatellite-containing DNA clones. Nucleic Acids Research 23:3802-3803.
4. D'Amato, M. E., D. H. Lunt, and G. R. Carvalho. 1999. Microsatellite markers for the hake Macruronus magellanicus amplify other gadoid fish. Molecular Ecology 8:1086-1087.
5. Ender, A., K. Schwenk, T. Stadler, B. Streit, and B. Schierwater. 1996. RAPD identification of microsatellite in Daphnia. Molecular Ecology 5:437-441.
6. Gao, T. X., D. Lou, J. X. Liu, Y. P. Zhang, and K. Yokogawa. 2004. Genetic variation among sea bass populations. Acta Hydrobiologica Sinica 28:69-73.
7. Karagyozov, L, I. D. Kalcheva, and V. M. Chapman. 1993. Construction of random small-insert genomic libraries highly enriched for simple sequence repeats. Nucleic Acids Research 21:3911-3912.
8. Kijas, J. M., J. C. Fowler, C. A. Garbett, and M. R. Thomas. 1994. Enrichment of microsatellites from the citrus genome using biotinylated oligonucleotide sequences bound to streptavidin-coated magnetic particles. Biotechniques 16:656-662.
9. Klein, P. E., R. R. Klein, S. W. Cartinhour, P. E. Ulanch, J. Dong, J. A. Obert, D. T. Morishige, S. D. Schlueter, K. L. Childs, M. Ale, and J. E. Mullet. 2000. A high-throughput AFLP-based method for constructing integrated genetic and physical maps: Progress toward a sorghum genome map. Genome Research 10:789-807.
10. Li, M. Y., M. Z. Zhao, A. H. Zhong, and L. Y. Xue. 2003. Comparative analysis of rapd genetic variation between two stocks of sea bass (lateolabrax japonicus) from shandong rizhao and fujian xiamen sea areas. Oceanologia et Limnologia Sinica 34:618-624.
11. Liu, Y. G., S. L. Chen, and B. F. Li. 2005a. Assessing the genetic structure of three Japanese flounder (Paralichthys olivaceus) stocks by microsatellite markers. Aquaculture 243:103-111.
12. Liu, Y. G., S. L. Chen, B. F. Li, Z. J. Wang, and Z.J. Liu. 2005b. Analysis of genetic variation in selected stocks of hatchery flounder, Paralichthys olivaceus, using AFLP markers. Biochemical Systematics and Ecology 33:993-1005.
13. Liu, Y. G., X. Y. Wang, and L. X. Liu. 2004. Analysis of genetic variation in surviving apple shoots following cryopreservation by vitrification. Plant Science 166:677-685.
14. Lunt, D. H., W. F. Hutchinson, and G. R. Carvalho. 1999. An efficient method for PCR-based identification of microsatellite arrays (PIMA). Molecular Ecology 8:893-894.
15. Merril, C. R., R. C. Switzer, and M. L. Van Keuren. 1979. Trace polypeptides in cellular extracts and human body fluids detected by two-dimensional electrophoresis and a highly sensitive silver stain. Proceedings of the National Academy of Sciences of the United States of America 76:4335-4339.
16. Mueller, U. G. and L. L. Wolfenbarger. 1999. AFLP genotyping and fingerprinting. Trends in Ecology and Evolution 14:389-394.
17. Ostrander, E. A., P. M. Jong, J. Rine, and G. Duyk. 1992. Construction of small-insert genomic DNA libraries highly enriched for microsatellite repeat sequences. Proceedings of the National Academy of Sciences of the United States of America 89:3419-3423.
18. Paetkau, D. 1999. Microsatellites obtained using strand extension: An enrichment protocol. Biotechniques 26:690-697.
19. Park, J. Y., K. K. Kim, and Y. Kim. 1996. Genetic characterization of two types of sea bass, Lateolabrax japonicus in Korea by isozyme analysis. Journal of Aquaculture 9:437-444.
20. Rassmann, K., C. Schlotterer, and D. Tautz. 1991. Isolation of simplesequence loci for use in polymerase chain reaction-based DNA fingerprinting. Electrophoresis 12:113-118.
21. Rice, W. R. 1989. Analyzing tables of statistical tests. Evolution 43:223-225.
22. Richardson, T., S. Cato, J. Ramser, G. Kahl, and K. Weising. 1995. Hybridization of microsatellites to RAPD: A new source of polymorphic markers. Nucleic Acids Research 23:3798-3799.
23. Schneider, S., D. Roessli, and L. Excoffier. 2000. ARLEQUIN: A software for population genetics data analysis. Genetics and Biometry Laboratory. University of Geneva, Geneva, Switzerland.
24. Tautz, D. 1993. Notes on the definition and nomenclature of tandemly repetitive DNA sequences. EXS 67:21-28.
25. Tautz, D., M. Trick, and G. Dover. 1986. Cryptic simplicity in DNA is a major source of genetic variation. Nature 322:652-656.
26. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Research 23:4407-4414.
27. Wei, F., K. Gobelman-Werner, S. M. Morroll, J. Kurth, L. Mao, R. Wing, D. Leister, P. Schulze-Lefert, and R. P. Wise. 1999. The Mla (powdery mildew) resistance cluster is associated wit three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 4S (1HS) of barley. Genetics 153:1929-1948.
28. Williams, J. G. K., A. R. Kubelik, K. J. Livak, J. A. Rafalski, and S. V. Tingey. 1990. DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18:6531-6535.
29. Wu, K., Jones, R., L. Danneberger, and P. A. Scolnik. 1994. Detection of microsatellite polymorphisms without cloning. Nucleic Acids Research 22:3257-3258.
30. Yeh, F. C., R. C. Yang, and T. Boyle. 1999. POPGENE version 1.3.1. Microsoft window-bases freeware for population genetic analysis. University of Alberta and the Centre for International Forestry Research. www.ualberta.ca/~fyeh/.
31. Zane, L., L. Bargelloni, and T. Patarnello. 2002. Strategies for microsatellite isolation: A review. Molecular Ecology 11:1-16.
32. Zobrist, K., K. Meksem, C. Wu, Q. Tao, H. Zhang, and D. A. Lightfoot. 2000. Integrated physical mapping of the soybean genome a tool for rapid identification of economically important genes. Soybean Genetics Newsletter 27:10-15.