A bioaugmentation failure caused by phage infection and weak biofilm formation ability

Journal of Environmental Sciences

Volumn 21, Issue 8, 2009, Pages 1153-1161

  FU, Songzhe ^a,b   FAN, Hongxia ^a,b   LIU, Shuangjiang ^a   LIU, Ying ^c   LIU, Zhipei ^a  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

^c INSTITUTE OF OCEANOLOGY   (China)

Author keywords

ammonia removal; fluorescent in situ hybridization (FISH); Lutimonas sp. H10; marine culture; nitrification breakdown; water circulation

Indexed keywords

AMMONIA REMOVAL; FLUORESCENT IN SITU HYBRIDIZATION (FISH); LUTIMONAS SP. H10; MARINE CULTURE; WATER CIRCULATION;

AGRICULTURE; AMMONIA; AQUACULTURE; BACTERIOLOGY; BARIUM COMPOUNDS; BIOFILMS; DENITRIFICATION; FLUORESCENCE; MEATS; OXIDATION; PROTOZOA; WATER TREATMENT;

NITRIFICATION;

AMMONIA;

AMMONIA; BACTERIUM; BIOFILM; FILTER; HYBRIDIZATION; INOCULATION; MARICULTURE; NITRIFICATION; PROTOZOAN; RNA; WATER TREATMENT;

ARTICLE; BACTERIOPHAGE; BIOFILM; FLAVOBACTERIACEAE; FLUORESCENCE IN SITU HYBRIDIZATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM; SEWAGE; VIROLOGY;

AMMONIA; BACTERIOPHAGES; BIOFILMS; FLAVOBACTERIACEAE; IN SITU HYBRIDIZATION, FLUORESCENCE; WASTE DISPOSAL, FLUID;

BACTERIA (MICROORGANISMS); PROTOZOA;

EID: 68349097476     PISSN: 10010742     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1001-0742(08)62396-7     Document Type: Article

References (38)

1. Alexander M. Biodegradation and Bioremediation. 2nd ed. (1999), Academic Press, San Diego, CA 453
2. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 215 (1990) 403-410
3. APHA, AWWA, WPCF, 1998. Standards Methods for the Examination of Water and Wastewater (9th ed.). Washington DC, USA.
4. Bergh O., Borsheim K.Y., Bratbak G., and Heldal M. High abundance of viruses foud in aquatic environments. Nature 340 (1989) 467-468
5. Bouchez T., Patureau D., Dabert P., Juretschko S., Dore J., Delgenes P., et al. Ecological study of a bioaugmentation failure. Environmental Microbiology 2 (2000) 179-190
6. Castignetti D., Palutsis D., and Turley J. An examination of proton translocation and energy conservation during heterotrophic nitrification. FEMS Microbiology Letters 54 1-3 (1990) 175-181
7. Challan Belval S., Gal L., Margiewes S., Garmyn D., Piveteau P., and Guzzo J. Assessment of the roles of LuxS, S-ribosyl homocysteine, and autoinducer 2 in cell attachment during biofilm formation by Listeria monocytogenes EGD-e. Applied and Environmental Microbiology 72 (2006) 2644-2650
8. Colt J.E., and Armstrong D.A. Nitrogen toxicity to crustaceans, fish, and mollusks. Proceedings of the Bioengineering Symposium for Fish Culture, Fish Culture Section (1981), American Fisheries Society, Bethesda MD 34-47
9. Cordeiro L.M.C., Stocker-Wörgötter E., Gorin P., and Iacomini M. Comparative studies of the polysaccharides from species of the genus Ramalinae lichenized fungi of three distinct habitats. Phytochemistry 60 (2003) 967-975
10. Fuhrman J.A., and Noble R.T. Viruses and protists cause similar bacterial mortality in coastal seawater. Limnology Oceanography 40 (1995) 1236-1242
11. Fuhrman J.A. Marine viruses and their biogeochemical and ecological effects. Nature 399 (1999) 541-548
12. Goldstein R.M., Mallory L.M., and Alexander M. Reasons for possible failure of inoculation to enhance biodegradation. Applied and Environmental Microbiology 50 (1985) 977-983
13. Grant S.G., Jessee J., Bloom F.R., and Hanahan D. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proceedings of the National Academy of Sciences 87 (1990) 4645-4649
14. Jensen H.L. The coryneform bacteria. Annual Review of Microbiology 6 (1952) 77-90
15. Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic Acid Techniques in Bacterial Systematics (1991), John Wiley, Chichester, United Kingdom 115-175
16. Levin M.A. Microbial Ecology: Principle, Methods and Applications (1992), McGraw-Hill Inc., New York, USA
17. Lyautey E., Ten-Hage L., Lacoste B., Rols J.L., and Garabetian F. Analysis of bacterial diversity in river biofilms using 16S rDNA PCR-DGGE: methodological settings and fingerprints interpretation. Water Research 39 (2005) 380-388
18. Lydmark P., Lind M., Sörensson F., and Hermansson M. Vertical distribution of nitrifying populations in bacterial biofilms from a full-scale nitrifying trickling filter. Environmental Microbiology 8 (2006) 2036-2049
19. Michel C., Jean M., Coulon S., Dictor M.C., Delorme F., Morin D., and Garrido F. Biofilms of As(III)-oxidising bacteria: formation and activity studies for bioremediation process development. Applied Microbiology and Biotechnology 77 (2007) 457-467
20. Mueller J.G., Resnick S.M., Shelton M.E., and Pritchard P.H. Effect of inoculation on the biodegradation of weathered Prudhoe Bay crude oil. Journal of Industrial Microbiology 10 (1992) 95
21. Rittmann B.E., and Whiteman R. Bioaugmentation: a coming of age. Biotechnology 1 (1994) 12-16
22. Robertson L.A., Cornelisse R., De Vos P., Hadioetomo R., and Kuenen J.G. Aerobic denitrification in various heterotrophic nitrifiers. Antonie van Leeuwenhoek 56 (1989) 289-299
23. Satoh H., Okabe S., Yamaguchi Y., and Watanabe Y. Evaluation of the impact of bioaugmentation and biostimulation by in situ hybridization and microelectrode. Water Research 37 (2003) 2206-2216
24. Scanlan D.J., Post A.F., Joint I., and Mann N.H. Genetic diversity of marine Synechococcus and co-occurring cyanophage communities: evidence for viral control of phytoplankton. Environmental Microbiology 7 (2005) 499-508
25. Stepanović S., Vuković D., Davić I., Savić B., and Ŝvabić-Vlahović M. A modified microtiter-plate test for quantification of staphylococcal biofilm formation. Journal of Microbiological Methods 40 (2000) 175-179
26. Stephenson D., and Stephenson T. Bioaugmentation for enhancing biological wastewater treatment. Biotechnology Advances 10 (1992) 549-559
27. Strunk O., and Ludwig W. ARB software package (1997). http://www.biol.chemie.tu-muenchen.de/pub/ARB/
28. Suttle C.A. The significance of viruses to mortality in aquatic microbial communities. Microbial Ecology 28 (1994) 237-243
29. Suttle C.A. Viruses in the sea. Nature 437 (2005) 356-361
30. Thingstad T.F. Elements of a theory for the mechanisms controlling abundance, diversity, and biogeochemical role of lytic bacterial viruses in aquatic systems. Limnology Oceanography 45 (2000) 1320-1328
31. van Veen J.A., van Overbeek L.S., and van Elsas J.D. Fate and activity of microorganisms introduced into soil. Microbiology and Molecular Biology Reviews 61 (1997) 121-135
32. Wakimoto N., Nishi J., Sheikh J., Nataro J., Sarantuya J., Iwashita M., et al. Quantitative biofilm assay using a microtiter plate to screen for enteroaggregative Escherichia coli. American Journal of Tropical Medicine and Hygiene 71 (2004) 687-690
33. Wheaton F.W., Hochheimer J.N., Kaiser G.E., Krones M.J., Libey G.S., and Easter C.C. Nitrification filter principles. In: Timmons M.B., and Losordo T.M. (Eds). Aquaculture Water Reuse Systems: Engineering Design and Management (1994), Elsevier, Netherlands 101-126
34. Wheeler Alm E., Oerther D.B., Larsen N., Stahl D.A., and Raskin L. The oligonucleotide probe database. Applied and Environmental Microbiology 62 (1996) 3557-3559
35. Wilhelm S.W., and Suttle C.A. Viruses and nutrient cycles in the sea. BioScience 49 (1999) 781-788
36. Wingender J., Neu T., and Flemming H. What are bacterial extracellular polymeric substances?. In: Wingender J., Neu T., and Flemming H. (Eds). Microbial Extracellular Polymeric Substances (1999), Springer, New York 1-19
37. Wommack K.E., and Colwell R.R. Virioplankton: viruses in aquatic ecosystems. Microbiology and Molecular Biology Reviews 64 (2000) 69-114
38. Zhu S.M., and Chen S.L. An experimental study on nitrification biofilm performances using a series reactor system. Aquacultural Engineering 20 (1999) 245-259