메뉴 건너뛰기




Volumn 5462 LNBI, Issue , 2009, Pages 282-294

Modeling of genetic regulatory network in stochastic π-calculus

Author keywords

Genetic regulatory network; Stochastic calculus; System biology

Indexed keywords

APPLICATION EXAMPLES; DELAY PARAMETERS; GENETIC REGULATORY NETWORK; GENETIC REGULATORY NETWORKS; INTERACTING GENES; LOGICAL METHODS; REGULATORY NETWORK; STOCHASTIC SIMULATORS; SYSTEM BIOLOGY;

EID: 68249132801     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-642-00727-9_27     Document Type: Conference Paper
Times cited : (2)

References (28)
  • 1
    • 0036207347 scopus 로고    scopus 로고
    • Modeling and simulation of genetic regulatory systems: A literature review
    • De Jong, H.: Modeling and simulation of genetic regulatory systems: a literature review. J. Comput. Biol. 9(1), 67-103 (2002)
    • (2002) J. Comput. Biol. , vol.9 , Issue.1 , pp. 67-103
    • De Jong, H.1
  • 2
    • 0031879114 scopus 로고    scopus 로고
    • Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected escherichia coli cells
    • Arkin, A., Ross, J., McAdams, H.H.: Stochastic kinetic analysis of developmental pathway bifurcation in phage λ-infected Escherichia coli cells. Genetics 149, 1633-1648 (1998)
    • (1998) Genetics 149 , pp. 1633-1648
    • Arkin, A.1    Ross, J.2    McAdams, H.H.3
  • 3
    • 0004068620 scopus 로고    scopus 로고
    • Kommunikation mit Automaten
    • PhD thesis Bonn: Institut für Instrumentelle Mathematik Schriften des IIM Nr. 2 (1962); 2nd edn., New York, English translation
    • Petri, C.A.: Kommunikation mit Automaten. PhD thesis, Bonn: Institut für Instrumentelle Mathematik, Schriften des IIM Nr. 2 (1962); 2nd edn., New York: Griffiss Air Force Base, Technical Report RADC-TR-65-377, vol.1(suppl. 1), English translation (1966)
    • Griffiss Air Force Base, Technical Report RADC-TR-65-377 , vol.1 , Issue.SUPPL. 1 , pp. 1966
    • Petri, C.A.1
  • 4
    • 42249112818 scopus 로고    scopus 로고
    • Petri net modelling of biological regulatory networks
    • Chaouiya, C., Remy, E., Thieffry, D.: Petri net modelling of biological regulatory networks. J. of Discrete Algorithms 6(2), 165-177 (2008)
    • (2008) J. of Discrete Algorithms , vol.6 , Issue.2 , pp. 165-177
    • Chaouiya, C.1    Remy, E.2    Thieffry, D.3
  • 5
    • 45749112203 scopus 로고    scopus 로고
    • Petri nets for systems and synthetic biology
    • In: Bernardo, M., Degano, P., Zavattaro, G. (eds.), LNCS, Springer, Heidelberg
    • Heiner, M., Gilbert, D., Donaldson, R.: Petri nets for systems and synthetic biology. In: Bernardo, M., Degano, P., Zavattaro, G. (eds.) SFM 2008. LNCS, vol.5016, pp. 215-264. Springer, Heidelberg (2008)
    • (2008) SFM 2008 , vol.5016 , pp. 215-264
    • Heiner, M.1    Gilbert, D.2    Donaldson, R.3
  • 6
    • 33845198572 scopus 로고    scopus 로고
    • Incorporating time delays into the logical analysis of gene regulatory networks
    • Priami C. (ed.), LNCS (LNBI), Springer, Heidelberg
    • Siebert, H., Bockmayr, A.: Incorporating time delays into the logical analysis of gene regulatory networks. In: Priami, C. (ed.) CMSB 2006. LNCS (LNBI), vol.4210, pp. 169-183. Springer, Heidelberg (2006)
    • (2006) CMSB 2006 , vol.4210 , pp. 169-183
    • Siebert, H.1    Bockmayr, A.2
  • 7
    • 33746622254 scopus 로고    scopus 로고
    • Parametric analysis and abstraction of genetic regulatory networks
    • London, UK. Electronic Notes in Theor. Comp. Sci. Elsevier, Amsterdam
    • Adélaíde, M., Sutre, G.: Parametric analysis and abstraction of genetic regulatory networks. In: Proc. 2nd Workshop on Concurrent Models in Molecular Biol. (Bio- CONCUR 2004), London, UK. Electronic Notes in Theor. Comp. Sci. Elsevier, Amsterdam (2004)
    • (2004) Proc. 2nd Workshop on Concurrent Models in Molecular Biol. (Bio-CONCUR 2004)
    • Adélaíde, M.1    Sutre, G.2
  • 8
    • 36949019568 scopus 로고    scopus 로고
    • Hybrid modelling and dynamical analysis of gene regulatory networks with delays
    • Ahmad, J., Bernot, G., Comet, J.P., Lime, D., Roux, O.: Hybrid modelling and dynamical analysis of gene regulatory networks with delays. ComPlexUs 3(4), 231-251 (2007)
    • (2007) ComPlexUs , vol.3 , Issue.4 , pp. 231-251
    • Ahmad, J.1    Bernot, G.2    Comet, J.P.3    Lime, D.4    Roux, O.5
  • 11
    • 33747877324 scopus 로고    scopus 로고
    • Biocham: An environment for modeling biological systems and formalizing experimental knowledge
    • Calzone, L., Fages, F., Soliman, S.: Biocham: an environment for modeling biological systems and formalizing experimental knowledge. Bioinformatics 22(14), 1805-1807 (2006)
    • (2006) Bioinformatics , vol.22 , Issue.14 , pp. 1805-1807
    • Calzone, L.1    Fages, F.2    Soliman, S.3
  • 14
    • 0035235039 scopus 로고    scopus 로고
    • Representation and simulation of biochemical processes using the pi-calculus process algebra
    • Regev, A., Silverman, W., Shapiro, E.: Representation and simulation of biochemical processes using the pi-calculus process algebra. In: Proc. Pacific Symp. of Biocomputing, vol.6, pp. 459-470 (2001)
    • (2001) Proc. Pacific Symp. of Biocomputing , vol.6 , pp. 459-470
    • Regev, A.1    Silverman, W.2    Shapiro, E.3
  • 15
    • 0035888407 scopus 로고    scopus 로고
    • Application of a stochastic name-passing calculus to representation and simulation of molecular processes
    • Priami, C., Regev, A., Shapiro, E.Y., Silverman, W.: Application of a stochastic name-passing calculus to representation and simulation of molecular processes. Inf. Process. Lett. 80(1), 25-31 (2001)
    • (2001) Inf. Process. Lett. , vol.80 , Issue.1 , pp. 25-31
    • Priami, C.1    Regev, A.2    Shapiro, E.Y.3    Silverman, W.4
  • 16
    • 34447276447 scopus 로고    scopus 로고
    • Cell cycle control in eukaryotes: A biospi model
    • Lecca, P., Priami, C.: Cell cycle control in eukaryotes: A biospi model. Electr. Notes Theor. Comput. Sci. 180(3), 51-63 (2007)
    • (2007) Electr. Notes Theor. Comput. Sci. , vol.180 , Issue.3 , pp. 51-63
    • Lecca, P.1    Priami, C.2
  • 20
    • 0022429106 scopus 로고
    • The or control system of bacteriophage lambda: A physical-chemical model for gene regulation
    • Shea, M.A., Ackers, G.K.: The or control system of bacteriophage lambda: a physical-chemical model for gene regulation. J. Mol. Biol. 181, 211-230 (1985)
    • (1985) J. Mol. Biol. 181 , pp. 211-230
    • Shea, M.A.1    Ackers, G.K.2
  • 22
    • 68249127702 scopus 로고    scopus 로고
    • Spim
    • Phillips, A., Cardelli, L.: Spim (2007), http://research.microsoft.com/ ~aphillip/spim/
    • (2007)
    • Phillips, A.1    Cardelli, L.2
  • 23
    • 84974715948 scopus 로고
    • Stochastic π-calculus
    • Priami, C.: Stochastic π-calculus. Computer Journal 6, 578-589 (1995)
    • (1995) Computer Journal 6 , pp. 578-589
    • Priami, C.1
  • 25
    • 38049132336 scopus 로고    scopus 로고
    • Efficient, correct simulation of biological processes in the stochastic pi-calculus
    • In: Bošnački, D., Edelkamp, S. (eds.), LNCS, Springer, Heidelberg
    • Phillips, A., Cardelli, L.: Efficient, correct simulation of biological processes in the stochastic pi-calculus. In: Bošnački, D., Edelkamp, S. (eds.) SPIN 2007. LNCS, vol.4595, pp. 184-199. Springer, Heidelberg (2007)
    • (2007) SPIN 2007 , vol.4595 , pp. 184-199
    • Phillips, A.1    Cardelli, L.2
  • 26
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D.T.: Exact stochastic simulation of coupled chemical reactions. The Journal of Physical Chemistry 81(25), 2340-2361 (1977)
    • (1977) The Journal of Physical Chemistry , vol.81 , Issue.25 , pp. 2340-2361
    • Gillespie, D.T.1
  • 28
    • 0029267492 scopus 로고
    • Dynamical behaviour of biological regulatory networks - ii. immunity control in bacteriophage lambda
    • Thieffry, D., Thomas, R.: Dynamical behaviour of biological regulatory networks - ii. immunity control in bacteriophage lambda. Bull. Math. Biol. 57(2), 277-297 (1995)
    • (1995) Bull. Math. Biol. , vol.57 , Issue.2 , pp. 277-297
    • Thieffry, D.1    Thomas, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.