Anaerobic central metabolic pathways active during polyhydroxyalkanoate production in uncultured cluster 1 Defluviicoccus enriched in activated sludge communities: Research letter

FEMS Microbiology Letters

Volumn 298, Issue 1, 2009, Pages 79-84

  Burow, Luke C ^a   Mabbett, Amanda N ^a   Borrás, Luis ^a   Blackall, Linda L ^a,b  

^a UNIVERSITY OF QUEENSLAND   (Australia)

^b UNIVERSITY OF VALENCIA   (Spain)

Author keywords

Enhanced biological phosphorus removal; FISH; Glycogen (nonpolyphosphate) accumulating organisms; Microautoradiography; Wastewater

Indexed keywords

ACETIC ACID; ACONITATE HYDRATASE; FLUOROACETIC ACID; FUMARATE HYDRATASE; GLYOXYLIC ACID; MALONIC ACID; PHOSPHORUS; POLYHYDROXYALKANOIC ACID; POLYMER; SUCCINATE DEHYDROGENASE;

ACTIVATED SLUDGE; ALPHAPROTEOBACTERIA; ANAEROBIC BACTERIUM; ARTICLE; BACTERIUM CULTURE; BIOREACTOR; CARBOHYDRATE METABOLISM; CARBON STORAGE; GLYCOLYSIS; INFRARED SPECTROSCOPY; NONHUMAN; PRIORITY JOURNAL;

ACETATES; ACONITATE HYDRATASE; ANAEROBIOSIS; BACTERIAL PROTEINS; METABOLIC NETWORKS AND PATHWAYS; MODELS, BIOLOGICAL; POLYHYDROXYALKANOATES; RHODOSPIRILLACEAE; SEWAGE; SUCCINATE DEHYDROGENASE;

ALPHAPROTEOBACTERIA;

EID: 68149176720     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2009.01695.x     Document Type: Article

References (36)

1. Amann RI (1995) In situ identification of microorganisms by whole cell hybridization with rRNA-targeted nucleic acid probes. Molecular Microbial Ecology Manual (Akkermans ADL, van Elsas JD de Bruijn FJ, eds), pp. 1 15. Kluwer, London.
2. Amann RI, Binder BJ, Olson RJ, Chisholm SW, Devereux R Stahl DA (1990) Combination of 16S ribosomal RNA-targeted oligonucleotide probes with flow-cytometry for analyzing mixed microbial populations. Appl Environ Microb 56 : 1919 1925.
3. Blasco R, Cardenas J Castillo F (1989) Acetate metabolism in purple non-sulfur bacteria. FEMS Microbiol Lett 58 : 129 132.
4. Bond PL, Erhart R, Wagner M, Keller J Blackall LL (1999) Identification of some of the major groups of bacteria in efficient and nonefficient biological phosphorus removal activated sludge systems. Appl Environ Microb 65 : 4077 4084.
5. Burow LC, Kong Y, Nielsen JL, Blackall LL Nielsen PH (2007) Abundance and ecophysiology of Defluviicoccus spp., glycogen-accumulating organisms in full-scale wastewater treatment processes. Microbiology 153 : 178 185.
6. Burow LC, Mabbett AN Blackall LL (2008a) Anaerobic glyoxylate cycle activity during simultaneous utilization of glycogen and acetate in uncultured Accumulibacter enriched in enhanced biological phosphorus removal communities. ISME J 2 : 1040 1051.
7. Burow LC, Mabbett AN, McEwan AG, Bond PL Blackall LL (2008b) Bioenergetic models for acetate and phosphate transport in bacteria important in enhanced biological phosphorus removal. Environ Microbiol 10 : 87 98.
8. Cardon BP Barker HA (1947) Amino acid fermentations by Clostridium propionicum and Diplococcus glycinophilus. Arch Biochem 12 : 165 180.
9. Clark DP Cronan JE (1996) Two-carbon compounds and fatty acids as carbon sources. Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology (Neidhart F, Curtiss R, Ingraham JL, Schaechter M Umbarger H, eds), pp. 343 357. ASM Press, Washington, DC.
10. Crocetti GR, Hugenholtz P, Bond PL, Schuler A, Keller J, Jenkins D Blackall LL (2000) Identification of polyphosphate-accumulating organisms and design of 16S rRNA-directed probes for their detection and quantitation. Appl Environ Microb 66 : 1175 1182.
11. Crocetti GR, Banfield JF, Keller J, Bond PL Blackall LL (2002) Glycogen-accumulating organisms in laboratory-scale and full-scale wastewater treatment processes. Microbiology 148 : 3353 3364.
12. Dai Y, Yuan Z, Wang X, Oehman A Keller J (2007) Anaerobic metabolism of Defluviicoccus vanus related glycogen accumulating organisms (GAOs) with acetate and propionate as carbon sources. Water Res 41 : 1885 1896.
13. Daims H, Bruhl A, Amann R, Schleifer KH Wagner M (1999) The domain-specific probe EUB338 is insufficient for the detection of all bacteria: development and evaluation of a more comprehensive probe set. Syst Appl Microbiol 22 : 434 444.
14. Even S, Garrigues C, Loubiere P, Lindley ND Cocaign-Bousquet M (1999) Pyruvate metabolism in Lactococcus lactis is dependent upon glyceraldehyde-3- phosphate dehydrogenase activity. Metab Eng 1 : 198 205.
15. Filipe CDM, Daigger GT Grady CPL (2001) A metabolic model for acetate uptake under anaerobic conditions by glycogen accumulating organisms: stoichiometry, kinetics, and the effect of pH. Biotechnol Bioeng 76 : 17 31.
16. Galivan JH Allen SHG (1968) Methylmalonyl coenzyme A decarboxylase - its role in succinate decarboxylation by Micrococcus lactilyticus. J Biol Chem 243 : 1253 1261.
17. Garcia-Martin H, Ivanova N, Kunin V et al 2006) Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities. Nat Biotechnol 24 : 1263 1269.
18. Hillier S Charnetzky WT (1981) Glyoxylate bypass enzymes in Yersinia species and multiple forms of isocitrate lyase in Yersinia pestis. J Bacteriol 145 : 452 458.
19. Kong YH, Ong SL, Ng WJ Liu WT (2002) Diversity and distribution of a deeply branched novel proteobacterial group found in anaerobic-aerobic activated sludge processes. Environ Microbiol 4 : 753 757.
20. Kong YH, Nielsen JL Nielsen PH (2005) Identity and ecophysiology of uncultured actinobacterial polyphosphate-accumulating organisms in full-scale enhanced biological phosphorus removal plants. Appl Environ Microb 71 : 4076 4085.
21. Lauble H, Kennedy MC, Emptage MH, Beinert H Stout CD (1996) The reaction of fluorocitrate with aconitase and the crystal structure of the enzyme-inhibitor complex. P Natl Acad Sci USA 93 : 13699 13703.
22. Lee N, Nielsen PH, Andreasen KH, Juretschko S, Nielsen JL, Schleifer KH Wagner M (1999) Combination of fluorescent in situ hybridization and microautoradiography - a new tool for structure-function analyses in microbial ecology. Appl Environ Microb 65 : 1289 1297.
23. 13C nuclear magnetic resonance. Environ Microbiol 9 : 2694 2706.
24. Loken O Sirevag R (1982) Evidence for the presence of the glyoxylate cycle in Chloroflexus. Arch Microbiol 132 : 276 279.
25. Mendz GL, Hazell SL Srinivasan S (1995) Fumarate reductase - a target for therapeutic intervention against Helicobacter pylori. Arch Biochem Biophys 321 : 153 159.
26. Meyer RL, Saunders AM Blackall LL (2006) Putative glycogen-accumulating organisms belonging to the Alphaproteobacteria identified through rRNA-based stable isotope probing. Microbiology 152 : 419 429.
27. Mino T Satoh H (2006) Wastewater genomics. Nat Biotechnol 24 : 1229 1230.
28. Munoz-Elias EJ McKinney JD (2005) Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence. Nat Med 11 : 638 644.
29. Oehmen A, Keller-Lehmann B, Zeng RJ, Yuan ZG Keller J (2005) Optimisation of poly-beta-hydroxyalkanoate analysis using gas chromatography for enhanced biological phosphorus removal systems. J Chromatogr A 1070 : 131 136.
30. Oehmen A, Lemos PC, Carvalho G, Yuan Z, Keller J, Blackall LL Reis MAM (2007) Advances in enhanced biological phosphorus removal: from micro to macro scale. Water Res 41 : 2271 2300.
31. Ostle A Holt JG (1982) Nile blue A as a fluorescent stain for poly-beta-hydroxybutyrate. Appl Environ Microb 44 : 238 241.
32. Schuler AJ Jenkins D (2003) Enhanced biological phosphorus removal from wastewater by biomass with different phosphorus contents, part III: anaerobic sources of reducing equivalents. Water Environ Res 75 : 512 522. (Pubitemid 40674449)
33. Seviour RJ, Mino T Onuki M (2003) The microbiology of biological phosphorus removal in activated sludge systems. FEMS Microbiol Rev 27 : 99 127.
34. Sumegi B, Sherry AD Malloy CR (1990) Channeling of TCA cycle intermediates in cultured Saccharomyces cerevisiae. Biochemistry 29 : 9106 9110.
35. Wendisch VF, De Graaf AA, Sahm H Eikmanns BJ (2000) Quantitative determination of metabolic fluxes during coutilization of two carbon sources: comparative analyses with Corynebacterium glutamicum during growth on acetate and/or glucose. J Bacteriol 182 : 3088 3096.
36. Wong MT, Tan FM, Ng WJ Liu WT (2004) Identification and occurrence of tetrad-forming Alphaproteobacteria in anaerobic-aerobic activated sludge processes. Microbiology 150 : 3741 3748.