Thauera butanivorans sp. nov., a C2-C9 alkane-oxidizing bacterium previously referred to as 'Pseudomonas butanovora'

International Journal of Systematic and Evolutionary Microbiology

Volumn 59, Issue 7, 2009, Pages 1576-1578

  Dubbels, Bradley L ^a   Sayavedra Soto, Luis A ^a   Bottomley, Peter J ^a   Arp, Daniel J ^a  

^a OREGON STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALCOHOL; ALKANE; AROMATIC HYDROCARBON; CARBOXYLIC ACID; DNA; FATTY ACID; NITRATE; RIBOSOME RNA; RNA 16S; TERPENOID DERIVATIVE; BACTERIAL DNA;

ANAEROBIC GROWTH; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BETAPROTEOBACTERIA; DENITRIFICATION; DNA DNA HYBRIDIZATION; GENE SEQUENCE; LIPID COMPOSITION; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; OXIDATION; PHYLOGENY; PRIORITY JOURNAL; PSEUDOMONAS; PSEUDOMONAS BUTANOVORA; SEQUENCE ANALYSIS; TAXONOMY; THAUERA; THAUERA BUTANIVORANS; BACTERIUM IDENTIFICATION; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; JAPAN; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; OXIDATION REDUCTION REACTION; PHYSIOLOGY; RNA GENE; SEWAGE; SPECIES DIFFERENCE;

BACTERIA (MICROORGANISMS); BETAPROTEOBACTERIA; PSEUDOMONAS BUTANOVORA; THAUERA;

ALKANES; BACTERIAL TYPING TECHNIQUES; DNA, BACTERIAL; FATTY ACIDS; GENES, RRNA; JAPAN; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; OXIDATION-REDUCTION; PSEUDOMONAS; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SEWAGE; SPECIES SPECIFICITY; THAUERA;

EID: 68149126013     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.000638-0     Document Type: Article

References (18)

1. Alber, B. E., Spanheimer, R., Ebenau-Jehle, C. & Fuchs, G. (2006). Study of an alternate glyoxylate cycle for acetate assimilation by Rhodobacter sphaeroides. Mol Microbiol 61, 297-309.
2. Anders, H. J., Kaetzke, A., Kämpfer, P., Ludwig, W. & Fuchs, G. (1995). Taxonomic position of aromatic-degrading denitrifying pseudomonad strains K 172 and KB 740 and their description as new members of the genera Thauera, as Thauera aromatica sp. nov., and Azoarcus, as Azoarcus evansii sp. nov., respectively, members of the beta subclass of the Proteobacteria. Int J Syst Bacteriol 45, 327-333.
3. Anzai, Y., Kim, H., Park, J.-Y., Wakabayashi, H. & Oyaizu, H. (2000). Phylogenetic affiliation of the pseudomonads based on 16S rRNA sequence. Int J Syst Evol Microbiol 50, 1563-1589.
4. Arp, D. J. (1999). Butane metabolism by butane-grown 'Pseudomonas butanovora'. Microbiology 145, 1173-1180.
5. Dubbels, B. L., Sayavedra-Soto, L. A. & Arp, D. J. (2007). Butane monooxygenase of 'Pseudomonas butanovora': Purification and biochemical characterization of a terminal-alkane hydroxylating diiron monooxygenase. Microbiology 153, 1808-1816.
6. Foss, S. & Harder, J. (1998). Thauera linaloolentis sp. nov. and Thauera terpenica sp. nov., isolated on oxygen-containing monoterpenes (linalool, menthol, and eucalyptol) nitrate. Syst Appl Microbiol 21, 365-373.
7. Heider, J. & Fuchs, G. (2005). Family I. Rhodocyclaceae fam nov. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 2, pp. 907-913. Edited by D. J. Brenner, N. R. Krieg, J. T. Staley & G. M. Garrity. New York: Springer.
8. Macy, J. M., Rech, S., Auling, G., Dorsch, M., Stackebrandt, E. & Sly, L. I. (1993). Thauera selenatis gen. nov., sp. nov., a member of the beta subclass of Proteobacteria with a novel type of anaerobic respiration. Int J Syst Bacteriol 43, 135-142.
9. Mechichi, T., Stackebrandt, E., Gad'on, N. & Fuchs, G. (2002). Phylogenetic and metabolic diversity of bacteria degrading aromatic compounds under denitrifying conditions, and description of Thauera phenylacetica sp. nov., Thauera aminoaromatica sp. nov., and Azoarcus buckelii sp. nov. Arch Microbiol 178, 26-35.
10. Scholten, E., Lukow, T., Auling, G., Kroppenstedt, R. M., Rainey, F. A. & Diekmann, H. (1999). Thauera mechernichensis sp. nov., an aerobic denitrifier from a leachate treatment plant. Int J Syst Bacteriol 49, 1045-1051.
11. Simbahan, J., Drijber, R. & Blum, P. (2004). Alicyclobacillus vulcanalis sp. nov., a thermophilic, acidophilic bacterium isolated from Coso Hot Springs, California, USA. Int J Syst Evol Microbiol 54, 1703-1707.
12. Sluis, M. K., Sayavedra-Soto, L. A. & Arp, D. J. (2002). Molecular analysis of the soluble butane monooxygenase from 'Pseudomonas butanovora'. Microbiology 148, 3617-3629.
13. Song, B., Palleroni, N. J., Kerkhof, L. J. & Haggblom, M. M. (2001). Characterization of halobenzoate-degrading, denitrifying Azoarcus and Thauera isolates and description of Thauera chlorobenzoica sp. nov. Int J Syst Evol Microbiol 51, 589-602.
14. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: A place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
15. Stackebrandt, E. & Liesack, W. (1993). Nucleic acids and classification. In Handbook of New Bacterial Systematics, pp. 152-189. Edited by M. Goodfellow & A. G. O'Donnell. London: Academic Press.
16. Takahashi, J., Ichikawa, Y., Sagae, H., Komura, I., Kanou, H. & Yamada, K. (1980). Isolation and identification of n-butane-assimilating bacterium. Agric Biol Chem 44, 1835-1840.
17. Urbance, J. W., Bratina, B. J., Stoddard, S. F. & Schmidt, T. M. (2001). Taxonomic characterization of Ketogulonigenium vulgare gen. nov., sp. nov. and Ketogulonigenium robustum sp. nov., which oxidize L-sorbose to 2-keto-L-gulonic acid. Int J Syst Evol Microbiol 51, 1059-1070.
18. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont, P. A. D., Kandler, O., Krichevsky, M. I.,Moore, L.H.,Moore,W. E. C., Murray, R.G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.