Molecular comparison of single cell MDA products derived from different cell types

Reproductive BioMedicine Online

Volumn 19, Issue 1, 2009, Pages 89-98

  Glentis, Stavros ^a   Sengupta, Sioban ^a   Thornhill, Alan ^b   Wang, Rubin ^c   Craft, Ian ^d   Harper, Joyce Catherine ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

^b Bridge Fertility Gynaecology and Genetics Centre   (United Kingdom)

^c UNIVERSITY COLLEGE LONDON   (United Kingdom)

^d London Fertility Centre   (United Kingdom)

Author keywords

Multiple displacement amplification (MDA); Preimplantation genetic diagnosis (PGD); Single cell PCR

Indexed keywords

DITHIOTHREITOL;

ALLELE; ARTICLE; BLASTOMERE; CELL STRUCTURE; CHEEK; CYTOLYSIS; FIBROBLAST; GENE AMPLIFICATION; GENETIC ANALYSIS; LYMPHOCYTE; MULTIPLEX POLYMERASE CHAIN REACTION; PRENATAL DIAGNOSIS;

EID: 68149098693     PISSN: 14726483     EISSN: None     Source Type: Journal    
DOI: 10.1016/S1472-6483(10)60051-X     Document Type: Article

References (34)

1. Burlet P, Frydman N, Gigarel N et al. 2006 Multiple displacement amplification improves PGD for fragile X syndrome. Molecular Human Reproduction. 12, 647-652. (Pubitemid 44605612)
2. Cha KY, Lee SH, Chung HM et al. 2005 Quantification of mitochondrial DNA using real-time polymerase chain reaction in patients with premature ovarian failure. Fertility and Sterility 84, 1712-1718. (Pubitemid 41785669)
3. Cui XF, Li HH, Goradia TM et al. 1989 Single-sperm typing: determination of genetic distance between the G gamma-globin and parathyroid hormone loci by using the polymerase chain reaction and allele-specific oligomers. Proceedings of the National Academy of Sciences of the USA 86, 9389-9393.
4. Darlington GJ 2006 Lymphocyte isolation and culture. CSHprotocols doi:10.1101/pdb.prot4480.
5. Dean FB, Hosono S, Fang L et al. 2002 Comprehensive human genome amplification using multiple displacement amplification. Proceedings of the National Academy of Sciences of the USA 99, 5261-5266. (Pubitemid 34411536)
6. Delhanty JD, Harper JC 2000 Pre-implantation genetic diagnosis. Best Practice and Research Clinical Obstetrics and Gynaecology 14, 691-708.
7. Fiegler H, Geigl JB, Langer S, et al. 2007 High resolution array-CGH analysis of single cells. Nucleic Acids Research 35, e15. (Pubitemid 46344729)
8. Glentis S, SenGupta S, Thornhill A et al. 2006 Multiple displacement amplification as a method of whole genome amplification for preimplantation genetic diagnosis. Human Reproduction 21, i40.
9. Handyside AH, Robinson MD, Simpson RJ et al. 2004 Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. Molecular Human Reproduction 10, 767-772.
10. Hellani A, Coskun S, Tbakhi A, Al-Hassan S 2005 Clinical application of multiple displacement amplification in preimplantation genetic diagnosis. Reproductive BioMedicine Online 10, 376-380. (Pubitemid 40372672)
11. Hughes S, Arnesona N, Donea S, Squirea J 2005 The use of whole genome amplification in the study of human disease. Progress in Biophysics and. Molecular Biology 88, 173-189. (Pubitemid 39547777)
12. Kakourou G, Dhanjal S, Daphnis D et al. 2007 Preimplantation genetic diagnosis for myotonic dystrophy type 1: detection of crossover between the gene and the linked marker APOC2. Prenatal Diagnosis 27, 111-116. (Pubitemid 46293926)
13. Keskintepe L, Sher G, Keskintepe M 2007 Reproductive oocyte/ embryo genetic analysis: comparison between fluorescence in-situ hybridization and comparative genomic hybridization. Reproductive Biomedicine Online 15, 303-309. (Pubitemid 47430370)
14. Lage JM, Leamon JH, Pejovic T et al. 2003 Whole genome analysis of genetic alterations in small DNA samples using hyperbranched strand displacement amplification and array-CGH. Genome Research 13, 294-307. (Pubitemid 36581838)
15. Lasken RS, Stockwell TB 2007 Mechanism of chimera formation during the multiple displacement amplification reaction. BMC Biotechnology 7, 19.
16. Le Caignec C, Spits C, Sermon K et al. 2006 Single-cell chromosomal imbalances detection by array CGH. Nucleic Acids Research 34, e68. (Pubitemid 43985649)
17. Lledo B, Ten J, Galan FM, Bernabeu R 2006 Preimplantation genetic diagnosis of Marfan syndrome using multiple displacement amplification. Fertility and Sterility 86, 949-955. (Pubitemid 44485049)
18. Loiko VA, Ruban GI, Gritsai OA et al. 2006 Morphometric model of lymphocyte as applied to scanning flow cytometry. Journal of Quantitative Spectroscopy and Radioactive Transfer 102, 73-84.
19. Mantzouratou A, Mania A, Fragouli E et al. 2007 Variable aneuploidy mechanisms in embryos from couples with poor reproductive histories undergoing preimplantation genetic screening. Human Reproduction 22, 1844-1853. (Pubitemid 47062751)
20. Moutou C, Gardes N, Viville, S 2004 Duplex, triplex and quadruplex PCR for the preimplantation genetic diagnosis (PGD) of cystic | fibrosis (CF), an exhaustive approach. Prenatal Diagnosis 24, 562-569. (Pubitemid 39061914)
21. Panelli S, Damiani G, Espen L et al. 2006 Towards the analysis of the genomes of single cells: further characterization of the multiple displacement amplification. Gene 372, 1-7.
22. Pierce KE, Rice JE, Sanchez JA, Wangh LJ 2002 QuantiLyse™: reliable DNA amplification from single cells. BioTechniques 32, 1106-1111.
23. Piyamongkol W, Bermudez MG, Harper JC, Wells D 2003 Detailed investigation of factors influencing amplification efficiency and allele drop-out in single cell PCR: implications for preimplantation genetic diagnosis. Molecular Human Reproduction 9, 411-420. (Pubitemid 36874299)
24. Ren Z, Zhou C, Xu Y, Deng J et al. 2007 Mutation and haplotype analysis for Duchenne muscular dystrophy by single cell multiple displacement amplification. Molecular Human Reproduction 13, 431-1136 (Pubitemid 47073583)
25. Renwick PJ, Lewis CM, Abbs S, Ogilvie CM 2007 Determination of the genetic status of cleavage-stage human embryos by microsatellite marker analysis following multiple displacement amplification. Prenatal Diagnosis 27, 206-215. (Pubitemid 46450577)
26. Renwick PJ, Trussler J, Ostad-Saffar E et al. 2006 Proof of principle and first cases using preimplantation genetic haplotyping - a paradigm shift for embryo diagnosis. Reproductive BioMedicine Online 13, 110-119. (Pubitemid 44054854)
27. Schowalter KV, Fredrickson JR, Thornhill AR 2007 Single Cell Diagnostics: Methods and Protocols, Humana Press, New Jersey, USA, pp. 86-95.
28. Sermon K, Van Steirteghem A, Liebaers I 2004 Preimplantation genetic diagnosis. Lancet 363, 1633-1641.
29. Spits C, Le Caignec C, De Rycke M, et al. 2006 Optimization and evaluation of single-cell whole-genome multiple displacement amplification. Human Mutation 5, 496-503. (Pubitemid 43673338)
30. Telenius H, Carter NP, Bebb CE et al. 1992 Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics 13, 718-725.
31. Thornhill AR, Dedie-Smulders CE, Geraedts JP et al. 2005 ESHRE PGD Consortium 'Best practice guidelines for clinical preimplantation genetic diagnosis (PGD) and preimplantation genetic screening (PGS)'. Human Reproduction 20, 35-48.
32. Wang G, Maher E, Brennan C et al. 2004 DNA amplification method tolerant to sample degradation. Genome Research 14, 2357-2366. (Pubitemid 39517343)
33. Wilton L, Voullaire L, Sargeant P et al. 2003 Preimplantation aneuploidy screening using comparative genomic hybridization or fluorescence in situ hybridization of embryos from patients with recurrent implantation failure. Fertility and Sterility 80, 860-868. (Pubitemid 37230016)
34. Zhang L, Cui X, Schmitt K et al. 1992 Whole genome amplification from a single cell: implications for genetic analysis. Proceedings of the National Academy of Sciences of the USA 89, 5847-5851.