Crystal structure of the cytosolic domain of the cation diffusion facilitator family protein

Proteins: Structure, Function and Bioinformatics

Volumn 76, Issue 3, 2009, Pages 768-771

  Higuchi, Takashi ^a   Hattori, Motoyuki ^a   Tanaka, Yoshiki ^a   Ishitani, Ryuichiro ^b   Nureki, Osamu ^a,b  

^a TOKYO INSTITUTE OF TECHNOLOGY   (Japan)

^b UNIVERSITY OF TOKYO   (Japan)

Author keywords

Cation diffusion facilitator; Cytosolic domain; Membrane protein; Transporter; Zinc

Indexed keywords

BACTERIAL PROTEIN; MEMBRANE PROTEIN;

ARTICLE; CRYSTAL STRUCTURE; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN DOMAIN; PROTEIN FUNCTION; PROTEIN STRUCTURE; THERMOTOGA MARITIMA;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; CATION TRANSPORT PROTEINS; CRYSTALLOGRAPHY, X-RAY; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID; THERMOTOGA MARITIMA;

EID: 68049131592     PISSN: 08873585     EISSN: 10970134     Source Type: Journal    
DOI: 10.1002/prot.22444     Document Type: Article

References (20)

1. Alberts IL, Nadassy K, Wodak SJ. Analysis of zinc binding sites in protein crystal structures. Protein Sci 1998;7:1700-1716.
2. Outten CE, O'Halloran TV. Femtomolar sensitivity of metalloregulatory proteins controlling zinc homeostasis. Science 2001;292:2488-2492.
3. Paulsen IT, Saier MH, Jr. A novel family of ubiquitous heavy metal ion transport proteins. J Membr Biol 1997;156:99-103. 4. Haney CJ, Grass G, Franke S, Rensing C. New developments in the understanding of the cation diffusion facilitator family. J Ind Microbiol Biotechnol 2005;32:215-226.
4. Anton A, Grosse C, Reissmann J, Pribyl T, Nies DH. CzcD is a heavy metal ion transporter involved in regulation of heavy metal resistance in Ralstonia sp. strain CH34. J Bacteriol 1999;181:6876-6881.
5. Delhaize E, Kataoka T, Hebb DM, White RG, Ryan PR. Genes encoding proteins of the cation diffusion facilitator family that confer manganese tolerance. Plant Cell 2003;15:1131-1142.
6. Grass G, Otto M, Fricke B, Haney CJ, Rensing C, Nies DH, Munkelt D. FieF (YiiP) from Escherichia coli mediates decreased cellular accumulation of iron and relieves iron stress. Arch Microbiol 2005;183:9-18.
7. Munkelt D, Grass G, Nies DH. The chromosomally encoded cation diffusion facilitator proteins DmeF and FieF from Wautersia metallidurans CH34 are transporters of broad metal specificity. J Bacteriol 2004;186:8036-8043.
8. Persans MW, Nieman K, Salt DE. Functional activity and role of cation-efflux family members in Ni hyperaccumulation in Thlaspi goesingense. Proc Natl Acad Sci USA 2001;98:9995-10000.
9. Lu M, Fu D. Structure of the zinc transporter YiiP. Science 2007;317:1746-1748.
10. Cherezov V, Hofer N, Szebenyi DM, Kolaj O, Wall JG, Gillilan R, Srinivasan V, Jaroniec CP, Caffrey M. Insights into the mode of action of a putative zinc transporter CzrB in Thermus thermophilus. Structure 2008;16:1378-1388.
11. Hattori M, Tanaka Y, Ishitani R, Nureki O. Crystallization and preliminary X-ray diffraction analysis of the cytosolic domain of a cation diffusion facilitator family protein. Acta Crystallogr Sect F Struct Biol Cryst Commun 2007;63 (Part 9):771-773.
12. Otwinowski Z, Minor W. Processing of X-ray diffraction data collected in oscillation mode. Methods Enzymol 1997;276:307-326.
13. de La Fortelle E, Bricogne G. Maximum-likelihood heavy-atom parameter refinement in the MIR and MAD methods. Methods Enzymol 1997;276:472-494.
14. Emsley P, Cowtan K. Coot: model-building tools for molecular graphics. Acta Crystallogr D Biol Crystallogr 2004;60 (Pt 12 Pt 1):2126-2132.
15. Adams PD, Grosse-Kunstleve RW, Hung LW, Ioerger TR, McCoy AJ, Moriarty NW, Read RJ, Sacchettini JC, Sauter NK, Terwilliger TC. PHENIX: building new software for automated crystallographic structure determination. Acta Crystallogr D Biol Crystallogr 2002;58 (Part 11):1948-1954.
16. Collaborative Computational Project No. 4. The CCP4 suite: programs for protein crystallography. Acta Crystallogr D Biol Crystallogr 1994;50:760-763.
17. Gouet P, Courcelle E, Stuart DI, Metoz F. ESPript: analysis of multiple sequence alignments in postscript. Bioinformatics 1999;15:305-308.
18. Thompson JD, Higgins DG, Gibson TJ. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 1994;22:4673-4680.
19. Delano WL. The PyMOL molecular graphics system. 2002. Available at: http:pymolsourceforgenet/.
20. Potterton E, McNicholas S, Krissinel E, Cowtan K, Noble M. The CCP4 molecular-graphics project. Acta Crystallogr D Biol Crystallogr 2002;58 (Part 11):1955-1957.