Comparative chromosome mapping of repetitive sequences. Implications for genomic evolution in the fish, Hoplias malabaricus

BMC Genetics

Volumn 10, Issue , 2009, Pages

  Cioffi, Marcelo B ^a   Martins, Cesar ^b   Bertollo, Luiz A C ^a  

^a FEDERAL UNIVERSITY OF SÃO CARLOS   (Brazil)

^b SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

[No Author keywords available]

Indexed keywords

DNA 18S; DNA 5S; RIBOSOME DNA; SATELLITE DNA; SILVER; DNA MODIFICATION METHYLASE HINDIII; RNA 18S; SITE SPECIFIC DNA METHYLTRANSFERASE (ADENINE SPECIFIC);

ANIMAL CELL; ANIMAL GENETICS; ANIMAL TISSUE; ARTICLE; AUTOSOME; CHROMOSOMAL LOCALIZATION; CHROMOSOME MAP; CHROMOSOME MARKER; CHROMOSOME NOR; COMPARATIVE GENE MAPPING; CONTROLLED STUDY; DNA SEQUENCE; EVOLUTIONARY RATE; FISH; FLUORESCENCE IN SITU HYBRIDIZATION; GENETIC CONSERVATION; GENOME ANALYSIS; HOPLIAS MALABARICUS; KARYOTYPE EVOLUTION; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE REPEAT; X CHROMOSOME; Y CHROMOSOME; ANIMAL; GENETIC MARKER; GENETICS; GENOME; KARYOTYPING; METHODOLOGY;

HOPLIAS MALABARICUS;

ANIMALS; CHROMOSOME MAPPING; DNA, RIBOSOMAL; DNA, SATELLITE; EVOLUTION, MOLECULAR; FISHES; GENETIC MARKERS; GENOME; IN SITU HYBRIDIZATION, FLUORESCENCE; KARYOTYPING; NUCLEOLUS ORGANIZER REGION; REPETITIVE SEQUENCES, NUCLEIC ACID; RNA, RIBOSOMAL, 18S; SEQUENCE ANALYSIS, DNA; SITE-SPECIFIC DNA-METHYLTRANSFERASE (ADENINE-SPECIFIC);

EID: 67949103615     PISSN: None     EISSN: 14712156     Source Type: Journal    
DOI: 10.1186/1471-2156-10-34     Document Type: Article

References (36)

1. Bertollo LAC Born GG Dergam JA Fenocchio AS Moreira-Filho O A biodiversity approach in the Neotropical fish Hoplias malabaricus. Karyotypic survey, geographic distribution of cytotypes and cytotaxonomic considerations Chromosome Res 2000, 8:603-613. 11117356
2. Dergam JA Suzuki HI Shibatta OA Silva LFD Júlio HF Caetano LG Black WC Molecular biogeography of the Neotropical fish Hoplias malabaricus (Erythrinidae, Characiformes) in the Iguassu, Tibagi, and Paraná rivers Genet Mol Biol 1998, 21:493-496.
3. Martins C Ferreira IA Oliveira C Foresti F Galetti PM Jr A tandemly repetitive centromeric DNA sequence of the fish Hoplias malabaricus (Characiformes: Erythrinidae) is derived from 5S rDNA Genetica 2006, 127:133-141. 16850219
4. Ferreira IA Bertollo LAC Martins C Comparative chromosome mapping of 5S rDNA and 5SHindIII repetitive sequences in Erythrinidae fishes (Characiformes) with emphasis on the Hoplias malabaricus' species complex Cytogenet Genome Res 2007, 118:78-83. 17901704
5. Cioffi MB Martins C Centofante L Jacobina U Bertollo LAC Chromosomal variability among allopatric populations of Erythrinidae fish Hoplias malabaricus: Mapping of three classes of repetitive DNAs Cytogenet Genome Res 2009.
6. Vicari MR Artoni RF Bertollo LAC Comparative cytogenetics of Hoplias malabaricus (Pisces, Erythrinidae). A population analysis in adjacent hydrographic basins Genet Mol Biol 2005, 28:103-110.
7. Almeida-Toledo LF Cytogenetic markers in neotropical freshwater fishes Phylogeny and Classification of Neotropical Fishes Porto Alegre: Edipucrs Malabarba LR, Reis RE, Vari, RP, Lucena ZMS, Lucena CAS 1998, 583-588.
8. Jesus CM Galetti PM Jr Valentini SR Moreira-Filho O Molecular and chromosomal location of two families of satellite DNA in Prochilodus lineatus (Pisces, Prochilodontidae), a species with B chromosomes Genetica 2003, 118:25-32. 12737143
9. Vicari MR Artoni RF Moreira-Filho O Bertollo LAC Colocalization of repetitive DNAs and silencing of major rRNA genes. A case report of the fish Astyanax janeiroensis Cytogenet Genome Res 2008, 122:67-72. 18931488
10. Biemont C Vieira C Junk DNA as an evolutionary force Nature 2006, 443:521-524. 17024082
11. Singer MF Highly repetitive sequences in mammalian genomes Int Rev Cytol 1982, 76:67-112. 6749748
12. Hummel S Meyerhhof W Korge E Knochel W Characterization of highly and moderately repetitive 500 bp EcoRI fragments from Xenopus laevis DNA Nucleic Acids Res 1984, 12:4921-4937. 318889 6330690
13. Haaf T Schmid M Chromosome topology in mammalian interphase nuclei Exp Cell Res 1991, 192:325-332. 1988281
14. Larin Z Fricker MD Tyler-Smith C De novo formation of several features of a centromere following introduction of an Y alphoid YAC into mammalian cells Hum Mol Genet 1994, 3:689-695. 8081354
15. Clabby C Goswami U Flavin F Wilkins NP Houghton JA Powell R Cloning, characterization and chromosomal location of a satellite DNA from the Pacific oyster, Crassostrea gigas Gene 1996, 168:205-209. 8654945
16. Oliveira C Wright JM Molecular cytogenetic analysis of heterochromatin in the chromosomes of tilapia, Oreochromis niloticus (Teleostei: Cichlidae) Chromosome Res 1998, 6:205-211. 9609664
17. Bertollo LAC Takahashi CS Moreira-Filho O Cytotaxonomic considerations on Hoplias lacerdae (Pisces, Erythrinidae) Brazil J Genet 1978, 1:103-120.
18. Pinkel D Straume T Gray J Cytogenetic analysis using quantitative, high sensitivity, fluorescence hybridization Proc Natl Acad Sci USA 1986, 83:2934-2938. 323421 3458254
19. Howell WM Black DA Controlled silver staining of nucleolus organizer regions with a protective colloidal developer: A 1-step method Experientia 1980, 36:1014-1015. 6160049
20. Levan A Fredga K Sandberg AA Nomenclature for centromeric position on chromosomes Hereditas 1964, 52:201-220.
21. Henikoff S Ahmad K Malik HS The centromere paradox: Stable inheritance with rapidly evolving DNA Science 2001, 293:1098-1102. 11498581
22. Long EO Dawid ID Repeated genes in eukaryotes Ann Rev Biochem 1980, 49:727-764. 6996571
23. Galetti PM Jr Chromosome diversity in neotropical fishes: NOR studies Ital J Zool 1998, 65:53-65.
24. Hsu TC Spirito SC Pardue ML Distribution of 18+28S ribosomal genes in mammalian genomes Chromosoma 1975, 53:25-33. 1104290
25. Miller DA Dev VG Tantravahi R Miller OJ Supression of human nucleolus organizer in mouse-human somatic hybrid cells Exp Cell Res 1976, 101:235-243. 61125
26. Bertollo LAC The nucleolar organizer regions of Erythrinidae fish. An uncommon situation in the genus Hoplias Cytologia 1996, 61:75-81.
27. Born GG Bertollo LAC An XX/XY sex chromosome system in a fish species, Hoplias malabaricus, with a polymorphic NOR-bearing X chromosome Chromosome Res 2000, 8:111-118. 10780699
28. Born GG Bertollo LAC Comparative cytogenetics among allopatric populations of the fish Hoplias malabaricus. Cytotypes with 2n = 42 chromosomes Genetica 2000, 110:1-9. 11519871
29. Martins C Galetti PM Jr Chromosomal localization of 5S rDNA genes in Leporinus fish (Anostomidae, Characiformes) Chromosome Res 1999, 7:363-367. 10515211
30. Vitelli L Batistoni R Andronico F Nardi I Barsacchi-Pilone G Chromosomal localization of 18S + 28S and 5S ribosomal RNA genes in evolutionary divergent anuran amphibians Chromosoma 1982, 84:475-491. 7075349
31. Schmid M Vitelli L Batistoni R Chromosome banding in Amphibia. IV. Constitutive heterochromatin, nucleolus organizers, 18S+28S and 5S ribosomal RNA genes in Ascaphidae, Pipidae, Discoglossidae and Pelobatidae Chromosoma 1987, 95:271-284. 3622081
32. Lucchini S Nardi I Barsacchi G Batistoni R Andronico F Molecular cytogenetics of the ribosomal (18S + 28S and 5S) DNA loci in primitive and advanced urodele amphibians Genome 1993, 36:762-773. 18470022
33. Mäkinem A Zijlstra C de Haan NA Mellink CHM Bosma AA Localization of 18S plus 28S and 5S ribosomal RNA genes in the dog by fluorescence in situ hybridization Cytogenet Cell Genet 1997, 78:231-235. 9465895
34. Schweizer D Loidl J A model for heterochromatin dispersion and the evolution of C band patterns Chromosomes Tod 1987, 9:61-74.
35. Bertollo LAC Fontes MS Fenocchio AS Cano J The X1X2Y sex chromosome system in the fish Hoplias malabaricus. I. G-, C- and chromosome replication banding Chromosome Res 1997, 5:493-499. 9421268
36. Bertollo LAC Mestriner CA The X1X2Y sex chromosome system in the fish Hoplias malabaricus (Pisces, Erythrinidae). II. Meiotic analyses Chromosome Res 1998, 6:141-147. 9543017