Multigeneic QTL: The laccase encoded within the soybean Rfs2/rhg1 locus inferred to underlie part of the dual resistance to cyst nematode and sudden death syndrome

Current Issues in Molecular Biology

Volumn 11, Issue SUPPL. 1, 2009, Pages

  Iqbal, M J ^a,b,c   Ahsan, R ^a,b,c   Afzal, A J ^c   Jamai, A ^c,d   Meksem, K ^c   El Shemy, H A ^c,e   Lightfoot, D A ^c  

^a Institute for Advanced Learning and Research   (United States)

^b VIRGINIA POLYTECHNIC INSTITUTE AND STATE UNIVERSITY   (United States)

^c SOUTHERN ILLINOIS UNIVERSITY   (United States)

^d Southern Illinois University at Carbondale ^*  (United States)

^e CAIRO UNIVERSITY   (Egypt)

Author keywords

Laccase; SDS resistance; Soybean; Yeast expression

Indexed keywords

COMPLEMENTARY DNA; LACCASE; PHENOL DERIVATIVE; VEGETABLE PROTEIN;

ARTICLE; CONTROLLED STUDY; CULTIVAR; DNA ISOLATION; ENZYME ACTIVITY; ENZYME SUBSTRATE; GENE ACTIVITY; GENE EXPRESSION; GENETIC SUSCEPTIBILITY; GENETIC TRANSCRIPTION; GENOTYPE; INTRON; MOLECULAR CLONING; MULTIGENE FAMILY; NEMATODE; NONHUMAN; PROMOTER REGION; PROTEIN EXPRESSION; QUANTITATIVE TRAIT LOCUS; SOYBEAN; SUDDEN DEATH; YEAST; ANIMAL; ENZYMOLOGY; FUSARIUM; GENETICS; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PARASITOLOGY; PHYLOGENY; PHYSIOLOGY; SYNDROME;

FUSARIUM VIRGULIFORME; GLYCINE MAX; HETERODERA GLYCINES;

ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA, COMPLEMENTARY; FUSARIUM; LACCASE; MOLECULAR SEQUENCE DATA; NEMATODA; PHYLOGENY; PLANT PROTEINS; QUANTITATIVE TRAIT LOCI; SOYBEANS; SYNDROME;

EID: 67849119143     PISSN: 14673037     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (45)

1. Afzal, A.J., Natarajan, A., Saini, N., Iqbal, M.J., Geisler, M., El Shemy, H., Mungur, R., Wilmitzer, L., and Lightfoot, D.A. (2009) The nematode resistance allele at the rhg1 locus alters the proteome and metabolome of soybean roots. Plant Physiol. (in press).
2. Ashfield, T., Bocian, A., Held, D., Henk, A., Marek, L., Danesh, D., Penuela, S., Meksem, K., and Lightfoot, D.A., Young, N., Shoemaker, R., and Innes, R. (2003) Genetic and physical mapping of the soybean Rpg1-b disease resistance gene reveals a complex locus containing several tightly linked families of NBS/LRR genes. Mol. Plant Microbe Interact. 16, 817-826.
3. Baker, R.A., and Nemec, S. (1994) Soybean sudden death syndrome, Isolation and identification of a new phytotoxin from cultures of the causal agent, Fusarium solani (abstract) Phytopathol. 84, 1144.
4. Cai, X., Davis, E.J., Ballif, J., Liang, M., Bushman, E., Haroldsen, V., Torabinejad, J., and Wu, Y. (2006) Mutant identification and characterization of the laccase gene family in Arabidopsis. J. Exp. Bot. 57, 2563-2569.
5. Cardenas W, and Dankert, J.R. (2000) Cresolase, catecholase and laccase activities in haemocytes of the red swamp crayfish. Fish Shellfish Immunol. 10, 33-46.
6. Davin, L.B., Bedgar, D.L., Katayama, T., and Lewis, N.G. (1992) On the stereoselective synthesis of (+)-pinoresinol in Forsythia suspense from its achiral precursor, coniferyl alcohol Phytochemistry 31, 3869-3874.
7. Dean, J.F.D., and Eriksson, K.-E.L. (1994) Laccase and deposition of lignin in vascular plants. Holzforschung 48, 21-33.
8. Diammantidis, G., Effosse, A., Potier, P., and Bally, R. (2000) Purification and characterization of the first bacterial laccase in the rhizospheric bacterium Azospirllum lipoferum. Soil Biol. Biochem. 342, 919-927.
9. Farias-Neto, A.F., Hashmi, R., Schmidt, M.E., Carlson, S.R., Hartman, G.L., Li, S., Nelson, R.L., and Diers, B.W. (2007) Mapping and confirmation of a sudden death syndrome resistance QTL on linkage group D2 from the soybean genotypes 'PI 567374' and 'Ripley'. Mol. Breed. 20, 53-62.
10. Gao, H., Narayanan, N.N., Ellison, L., and Bhattacharyya, M.K. (2005) Two classes of highly similar coiled coilnucleotide binding-leucine rich repeat genes isolated from the Rps1-k locus encode Phytophthora resistance in soybean. Mol. Plant Microbe Interact. 18, 1035-1045.
11. Gavnholt, B., Larsen, K., and Rasmussen, S.K. (2002) Isolation and characterization of laccase cDNAs from meristematic and stem tissue of ryegrass (Lolium perenne) Plant Sci. 162, 581-590.
12. Gibson, P.T., Shenaut, M.A., Njiti, V.N., Suttner, R.J., and Myers Jr, O. (1994) Soybean varietal response to sudden death syndrome. In, D. Wilkinson (ed), Proc Twenty-fourth Soybean Seed Res. Conf., Chicago, IL 6-7 Dec, 1994 (Washington DC: Am Seed Trade Assoc), pp 436-446.
13. Hauge, B.M., Wang, M.L., Parsons, J.D., and Parnell, L.D. (2001) Nucleic acid molecules and other molecules associated with soybean cyst nematode resistance. WO 01/51627 PCT/US01/00552 Patent # 20030005491.
14. Hobbs, D.H., Flintham, J.E., and Hills, M.J. (2004) Genetic control of storage oil synthesis in seeds of Arabidopsis. Plant Physiol. 136, 3341-3349.
15. Hoopes, J.T., and Dean, J.F.D. (2001) Staining electrophoretic gels for laccase and peroxidase activity using 1,8-diaminonaphthalene. Anal. Biochem. 293, 96-101.
16. Hyten, D.L., Choi, I.Y., Song, Q., Shoemaker, R.C., Nelson, R.L., Costa, J.M., Specht, J.E., and Cregan, P.B. (2007) Highly variable patterns of linkage disequilibrium in multiple soybean populations. Genetics 175, 1937-1944.
17. Iqbal, M.J., Meksem, K., Njiti, V.N., Kassem, M.A., and Lightfoot, D.A. (2001) Microsatellite markers identify three additional quantative trait loci for resistance to soybean sudden-death syndrome (SDS) in Essex x Forrest RILs. Theor. Appl. Genet. 102, 187-192.
18. Iqbal, M.J., Afzal, A.J., Yaegashi, S., Ruben, E., Triwitayakorn, K., Nijiti, V.N., Ahsan, R., Wood, A.J., and Lightfoot, D.A. (2002) A pyramid of loci for partial resistance to Fusarium solani f. sp. glycines maintains Myo-inositol 1-phosphate synthase expression in soybean roots. Theor. Appl. Genet. 105, 1115-1123.
19. Iqbal, M.J., Yaegashi, S., Ahsan, R., Shopinski, K., and Lightfoot, D.A. (2005) Root response to F. solani f. sp. glycines, Temporal accumulation of transcripts in partially resistant and susceptible soybean. Theor. Appl. Genet. 110, 1429-1438.
20. Kazi, S., Shultz, J.L., Afzal, A.J., Njiti, V.N., and Lightfoot, D.A. (2007) Different loci underlie resistance to soybean SDS root infection and leaf scorch in RILs from 'Flyer' by 'Hartwig'. Theor. Appl. Genet. 116, 967-977.
21. Kiefer-Myer, M.-C., Gomord, V., O'Connell, A., Halpin, C., and Faye, L. (1996) Cloning and sequence analysis of laccase-encoding cDNA clones from tobacco. Gene 178, 205-207.
22. LaFayette, P.R., Eriksson, K.-E.L., and Dean, J.F.D. (1999) Characterization and heterologous expression of laccase cDNAs from xylem tissue of yellow-poplar (Liriodendron tulipifera) Plant Mol. Biol. 40, 23-35.
23. -ΔΔCt method. Methods 24, 402-408.
24. Lozovaya, V.V., Lygin, A.V., Zernova, O.V., Li, S., Hartman, G.L., and Widholm, J.M. (2004) Isoflavonoid accumulation in soybean hairy roots upon treatment with Fusarium solani. Plant Physiol. Biochem. 42, 671-679.
25. Lozovaya, V.V., Lygin, A.V., Zernova, O.V., Li, S., Widholm, J.M., and Hartman, G.L. (2005) Lignin degradation by Fusarium solani f. sp. glycines. Plant Dis. 90, 77-82.
26. Luo, Y., Myers Jr, O., Lightfoot, D.A., and Schmidt, M.E. (1999) Root colonization of soybean cultivars in the field by Fusarium solani f. sp. glycines. Plant Dis. 83, 1155-1159.
27. McCaig, B.C., Meagher, R.B., and Dean, J.F.D. (2005) Gene structure and molecular analysis of the laccaselike multicopper oxidase (LMCO) gene family in Arabidopsis thaliana. Planta 221, 619-636.
28. Meksem, K., Doubler, T.W., Chancharoenchai, K., Njiti, V.N., Chang, S.J.C., Rao-Arelli, A.P., Cregan, P.E., Gray, L.E., Gibson, P.T., and Lightfoot, D.A. (1999) Clustering among loci underlying soybean resistance to Fusarium solani, SDS and SCN in near-isogenic lines. Theor. Appl. Genet. 99, 1131-1142.
29. Meksem, K., Pantazopoulos, P., Njiti, V.N., Hyten, D.L., Arelli, P.R., and Lightfoot, D.A. (2001) 'Forrest' resistance to the soybean cyst nematode is bigenic, saturation mapping of the Rhg1 and Rhg4 loci. Theor. Appl. Genet. 103, 710-717.
30. Njiti, V.N., Gray, L.E., and Lightfoot, D.A. (1997) Rate reducing resistance to Fusarium solani f. sp. phaseoli underlies field resistance to soybean Sudden Death Syndrome (SDS) Crop Sci. 37, 132-138.
31. Njiti, V.N., Doubler, T.W., Suttner, R.J., Gray, L.E., Gibson, P.T., and Lightfoot, D.A. (1998) Resistance to soybean sudden death syndrome and root colonization by Fusarium solanif. sp. glycines in near-isogeneic lines. Crop Sci. 38, 472-477.
32. Njiti, V.N., Johnson, J.E., Torto, T.A., Gray, L.E., and Lightfoot, D.A. (2001) Inoculums' rate influences selection for field resistance to soybean sudden death syndrome in the greenhouse. Crop Sci. 41, 1726-1731.
33. Njiti, V.N., Meksem, K., Iqbal, M.J., Johnson, J.E., Kassem, M.A., Zobrist, K.F., Kilo, V.Y., and Lightfoot, D.A. (2002) Common loci underlie field resistance to soybean sudden death syndrome in Forrest, Pyramid, Essex, and Douglas. Theor. Appl. Genet. 104, 294-300.
34. Prabhu, R.R., Njiti, V.N., Bell-Johnson, B., Johnson, J.E., Schmidt, M.E., Klein, J.H., and Lightfoot, D.A. (1999) Selecting soybean cultivars for dual resistance to soybean cyst nematode and sudden death syndrome using two DNA markers. Crop Sci. 39, 982-987.
35. Ranocha, P., Chabannes, M., Chamayou, S., Danoun, S., Jauneau, A., Boudet, A.M., and Goffiner, D. (2002) Laccase down-regulation causes alterations in phenolic metabolism and cell wall structure in poplar. Plant Physiol. 129, 145-155.
36. Ranocha, P., McDougall, G., Hawkins, S., Sterjiades, R., Borderies, G., Stewart, D., Cabanes-Macheteau, M., Boudet, A., and Goffiner, D. (1999) Biochemical characterization, molecular cloning and expression of laccases-a highly divergent gene family in Poplar. Eur. J. Biochem. 259, 485-495.
37. Ruben, E., Aziz, J., Afzal, A.J., Njiti, V.N., Triwitayakorn, K., Iqbal, M.J., Yaegashi, S., Arelli, P.R., Town, C.D., Meksem, K., and Lightfoot, D.A. (2006) Genomic analysis of the 'Peking' rhg1 locus, candidate genes that underlie soybean resistance to the cyst nematode Molec. Genet. Genom. 276, 320-330.
38. Searle, I.R., Men, A.E., Laniya, T.S., Buzas, D.M., Iturbe-Ormaetxe, I., Carroll, B.J., and Gresshoff, P.M. (2003) Long-distance signaling in nodulation directed by a CLAVATA1-like receptor kinase. Science 299, 109-112.
39. Shopinski, K.L., Iqbal, M.J., Afzal, A.J., Shultz, J.L., Jayaraman, D., and Lightfoot, D.A. (2006) Development of a pooled probe method for locating small gene families in a physical map of soybean using stress related paralogues and a BAC minimum tile path. Plant Methods 2, 20-28.
40. Shultz, J.L., Jayaraman, D., Shopinski, K.L., Iqbal, M.J., Kazi, S., Zobrist, K., Bashir, R., Yaegashi, S., Lavu, N., Afzal, A.J., Yesudas, C.R., Kassem, M.A., Wu, C., Zhang, H.B., Town, C.D., Meksem, K., and Lightfoot, D.A. (2006a) The soybean genome database (SoyGD), A browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max. Nucleic Acids Res. 34, D1-D8.
41. Shultz, J.L., Yesudas, C.R., Yaegashi, S., Afzal, A.J., Kazi, S., and Lightfoot, D.A. (2006b) Three minimum tile paths from bacterial artificial chromosome libraries of the soybean (Glycine max cv 'Forrest'), Tools for structural and functional genomics. Plant Methods 2, 9-18.
42. Sterjiades, R., Dean, J.F.D., Gamble, G., and Himmelsbach, D.S. (1993) Extracellular laccases and peroxidases from sycamore maple (Acer pseudopplatanus) cell suspension cultures Reactions with monolignols and lignin model compounds. Planta 190, 75-87.
43. Triwitayakorn, K., Njiti, V.N., Iqbal, M.J., Yaegashi, S., Town, C.D., and Lightfoot, D.A. (2005) Genomic analysis of a region encompassing QRfs1 and QRfs2, genes that underlie soybean resistance to sudden death syndrome. Genome 48, 125-138.
44. Wu, C., Sun, S., Nimmakayala, P., Santos FA., Springman, R., Ding, K., Meksem, K., Lightfoot, D.A., and Zhang, H.B. (2004) A BAC and BIBAC-based physical map of the soybean genome. Genome Res. 14, 319-326.
45. Zuyun, H., Houping, H., Ruxiu, C., and Yun'e, Z. (1998) Organic solvent enhanced spectrofluorimetric method for determination of laccase activity. Anal. Chim. Acta 374, 99-103.