메뉴 건너뛰기




Volumn 37, Issue SUPPL. 2, 2009, Pages

NetCSSP: Web application for predicting chameleon sequences and amyloid fibril formation

Author keywords

[No Author keywords available]

Indexed keywords

AMYLOID;

EID: 67849110003     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gkp351     Document Type: Article
Times cited : (79)

References (20)
  • 1
    • 0036527699 scopus 로고    scopus 로고
    • Therapeutic strategies for human amyloid diseases
    • Sacchettini,J.C. and Kelly,J.W. (2002) Therapeutic strategies for human amyloid diseases. Nat. Rev. Drug Discov., 1, 267-275.
    • (2002) Nat. Rev. Drug Discov , vol.1 , pp. 267-275
    • Sacchettini, J.C.1    Kelly, J.W.2
  • 2
    • 0035826234 scopus 로고    scopus 로고
    • Amyloid fibrils from muscle myoglobin
    • Fandrich,M., Fletcher,M.A. and Dobson,C.M. (2001) Amyloid fibrils from muscle myoglobin. Nature, 410, 165-166.
    • (2001) Nature , vol.410 , pp. 165-166
    • Fandrich, M.1    Fletcher, M.A.2    Dobson, C.M.3
  • 3
    • 33749681874 scopus 로고    scopus 로고
    • Analysis of chameleon sequences by energy decomposition on a pairwise per-residue basis
    • Yoon,S. and Jung,H. (2006) Analysis of chameleon sequences by energy decomposition on a pairwise per-residue basis. Protein J., 25 361-368.
    • (2006) Protein J , vol.25 , pp. 361-368
    • Yoon, S.1    Jung, H.2
  • 4
    • 3342963982 scopus 로고    scopus 로고
    • Detecting hidden sequence propensity for amyloid fibril formation
    • Yoon,S. and Welsh,W.J. (2004) Detecting hidden sequence propensity for amyloid fibril formation. Protein Sci., 13, 2149-2160.
    • (2004) Protein Sci , vol.13 , pp. 2149-2160
    • Yoon, S.1    Welsh, W.J.2
  • 5
    • 19544391613 scopus 로고    scopus 로고
    • Rapid assessment of contact-dependent secondary structure propensity: Relevance to amyloidogenic sequences
    • Yoon,S. and Welsh,W.J. (2005) Rapid assessment of contact-dependent secondary structure propensity: Relevance to amyloidogenic sequences. Proteins, 60, 110-117.
    • (2005) Proteins , vol.60 , pp. 110-117
    • Yoon, S.1    Welsh, W.J.2
  • 6
    • 0029889988 scopus 로고    scopus 로고
    • PHD: Predicting one-dimensional protein structure by profile-based neural networks
    • Rost,B. (1996) PHD: Predicting one-dimensional protein structure by profile-based neural networks. Methods Enzymol., 266, 525-539.
    • (1996) Methods Enzymol , vol.266 , pp. 525-539
    • Rost, B.1
  • 7
    • 0036568279 scopus 로고    scopus 로고
    • Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles
    • Pollastri,G., Przybylski,D., Rost,B. and Baldi,P. (2002) Improving the prediction of protein secondary structure in three and eight classes using recurrent neural networks and profiles. Proteins, 47, 228-235.
    • (2002) Proteins , vol.47 , pp. 228-235
    • Pollastri, G.1    Przybylski, D.2    Rost, B.3    Baldi, P.4
  • 8
    • 35148821507 scopus 로고    scopus 로고
    • CSSP2: An improved method for predicting contact-dependent secondary structure propensity
    • Yoon,S., Welsh,W.J., Jung,H. and Yoo,Y.D. (2007) CSSP2: An improved method for predicting contact-dependent secondary structure propensity. Comput. Biol. Chem., 31, 373-377.
    • (2007) Comput. Biol. Chem , vol.31 , pp. 373-377
    • Yoon, S.1    Welsh, W.J.2    Jung, H.3    Yoo, Y.D.4
  • 9
    • 3242785264 scopus 로고    scopus 로고
    • Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains
    • DuBay,K.F., Pawar,A.P., Chiti,F., Zurdo,J., Dobson,C.M. and Vendruscolo,M. (2004) Prediction of the absolute aggregation rates of amyloidogenic polypeptide chains. J. Mol. Biol., 341, 1317-1326.
    • (2004) J. Mol. Biol , vol.341 , pp. 1317-1326
    • DuBay, K.F.1    Pawar, A.P.2    Chiti, F.3    Zurdo, J.4    Dobson, C.M.5    Vendruscolo, M.6
  • 10
    • 25844466604 scopus 로고    scopus 로고
    • Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences
    • Tartaglia,G.G., Cavalli,A., Pellarin,R. and Caflisch,A. (2005) Prediction of aggregation rate and aggregation-prone segments in polypeptide sequences. Protein Sci., 14, 2723-2734.
    • (2005) Protein Sci , vol.14 , pp. 2723-2734
    • Tartaglia, G.G.1    Cavalli, A.2    Pellarin, R.3    Caflisch, A.4
  • 11
    • 0042467550 scopus 로고    scopus 로고
    • Rationalization of the effects of mutations on peptide and protein aggregation rates
    • Chiti,F., Stefani,M., Taddei,N., Ramponi,G. and Dobson,C.M. (2003) Rationalization of the effects of mutations on peptide and protein aggregation rates. Nature, 424, 805-808.
    • (2003) Nature , vol.424 , pp. 805-808
    • Chiti, F.1    Stefani, M.2    Taddei, N.3    Ramponi, G.4    Dobson, C.M.5
  • 12
    • 45749102914 scopus 로고    scopus 로고
    • The Zyggregator method for predicting protein aggregation propensities
    • Tartaglia,G.G. and Vendruscolo,M. (2008) The Zyggregator method for predicting protein aggregation propensities. Chem. Soc. Rev., 37, 1395-1401.
    • (2008) Chem. Soc. Rev , vol.37 , pp. 1395-1401
    • Tartaglia, G.G.1    Vendruscolo, M.2
  • 13
    • 5044235541 scopus 로고    scopus 로고
    • Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins
    • Fernandez-Escamilla,A.M., Rousseau,F., Schymkowitz,J. and Serrano,L. (2004) Prediction of sequence-dependent and mutational effects on the aggregation of peptides and proteins. Nat. Biotechnol., 22, 1302-1306.
    • (2004) Nat. Biotechnol , vol.22 , pp. 1302-1306
    • Fernandez-Escamilla, A.M.1    Rousseau, F.2    Schymkowitz, J.3    Serrano, L.4
  • 14
    • 33845978790 scopus 로고    scopus 로고
    • Insight into the structure of amyloid fibrils from the analysis of globular proteins
    • Trovato,A., Chiti,F., Maritan,A. and Seno,F. (2006) Insight into the structure of amyloid fibrils from the analysis of globular proteins. PLoS Comput. Biol., 2b, e170.
    • (2006) PLoS Comput. Biol , vol.2 b
    • Trovato, A.1    Chiti, F.2    Maritan, A.3    Seno, F.4
  • 15
    • 36248964819 scopus 로고    scopus 로고
    • The PASTA server for protein aggregation prediction
    • Trovato,A., Seno,F. and Tosatto,S.C. (2007) The PASTA server for protein aggregation prediction. Protein Eng. Des. Sel., 20, 521-523.
    • (2007) Protein Eng. Des. Sel , vol.20 , pp. 521-523
    • Trovato, A.1    Seno, F.2    Tosatto, S.C.3
  • 19
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch,W. and Sander,C. (1983) Dictionary of protein secondary structure: Pattern recognition of hydrogen-bonded and geometrical features. Biopolymers, 22, 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.