BiblioSphere - Hypothesis generation in regulatory network analysis

Bioinformatics for Systems Biology

Volumn 9781597454407, Issue , 2009, Pages 401-412

  Epple, Anton ^a   Scherf, Matthias ^a  

^a Genomatix GmbH   (Germany)

Author keywords

Microarray; Network; Statistical analysis; Textmining

Indexed keywords

EXPERT SYSTEMS; INPUT OUTPUT PROGRAMS; NETWORKS (CIRCUITS); STATISTICAL METHODS;

AUTOMATED GENERATION; BIOLOGICAL ENTITIES; HYPOTHESIS GENERATION; IN-NETWORK ANALYSIS; INTEGRATED EXPERT SYSTEMS; INTERACTIVE ANALYSIS; MICROARRAY ANALYSIS; TEXT-MINING;

MICROARRAYS;

EID: 67849092860     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-59745-440-7_21     Document Type: Chapter

References (10)

1. Maglott D., Ostell J., Pruitt, K. D., and Tatusova T. (2005). Entrez Gene: gene-centered information at NCBI. Nucleic Acids Res. 33(Database Issue):D54-D58.
2. Cartharius, K., Frech, K., Grote, K., Klocke, B., Haltmeier, M., Klingenhoff, A., Frisch, M., Bayerlein, M., and Werner, T. (2005). MatInspector and beyond: promoter analysis based on transcription factor binding sites. Bioinformatics 21, 2933-2942.
3. Dennis, G. Jr., Sherman, B. T., Hosack, D. A., Yang, J., Gao, W., Lane, H. C., and Lempicki, R. A. (2003), DAVID: Database for Annotation, Visualization and integrated Discovery. Genome Biol. 4(5):P3.
4. Zhong S., Storch F., Lipan O., Kao M. J., Weitz C., and Wong W. H. (2004). GoSurfer: a graphical interactive tool for comparative analysis of large gene sets in Gene Ontology space. Appl. Bioinformatics, 3(4), 261-264.
5. Berriz, G. F., King, O. D., Bryant, B., Sander, C., and Roth, F. P. (2003) Characterizing gene sets with FuncAssociate. Bioinformatics. 18, 2502-2504.
6. Demoulin, J. B., Ericson J., Kallin A., Rorsmann C., Ronnstrand L., and Heldin, C. H. (2004) Platelet-derived growth factor stimulates membrane lipid synthesis through activation of phosphatidylinositol 3-kinase and sterol regulatory element binding-proteins. J. Biol Chem. 279(34):35392-35402.
7. Kanehisa, M., Goto, S., Hattori, M., Aoki-Kinoshita, K. F., Itoh, M., Kawashima, S., Katayama, T., Araki, M., and Hirakawa, M. (2006). From genomics to chemical genomics: new developments inKEGG. Nucleic Acids Res. 34, D354-357.
8. Samuel Lattimore, B., van Dongen S., and Crabbe, M. J. (2005). GeneMCL in microarray analysis. Comput Biol Chem. 5, 354-359.
9. http://www.molecluarconnections.com
10. http://www.gnf.org