-
1
-
-
0037304408
-
Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins
-
Anantharaman,V., Aravind,L. and Koonin,E.V. (2003) Emergence of diverse biochemical activities in evolutionarily conserved structural scaffolds of proteins. Curr. Opin. Chem. Biol., 7, 12-20.
-
(2003)
Curr. Opin. Chem. Biol
, vol.7
, pp. 12-20
-
-
Anantharaman, V.1
Aravind, L.2
Koonin, E.V.3
-
2
-
-
36749073976
-
A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels
-
Ammelburg,M., Hartmann,M.D., Djuranovic,S., Alva,V., Koretke,K.K., Martin,J., Sauer,G., Truffault,V., Zeth,K., Lupas,A.N. et al. (2007) A CTP-dependent archaeal riboflavin kinase forms a bridge in the evolution of cradle-loop barrels. Structure, 15, 1577-1590.
-
(2007)
Structure
, vol.15
, pp. 1577-1590
-
-
Ammelburg, M.1
Hartmann, M.D.2
Djuranovic, S.3
Alva, V.4
Koretke, K.K.5
Martin, J.6
Sauer, G.7
Truffault, V.8
Zeth, K.9
Lupas, A.N.10
-
3
-
-
0035896039
-
Mh1 domain of Smad is a degraded homing endonuclease
-
Grishin,N.V. (2001) Mh1 domain of Smad is a degraded homing endonuclease. J. Mol. Biol., 307, 31-37.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 31-37
-
-
Grishin, N.V.1
-
4
-
-
0035367071
-
Protein structure similarities
-
Koehl,P. (2001) Protein structure similarities. Curr. Opin. Struct. Biol., 11, 348-353.
-
(2001)
Curr. Opin. Struct. Biol
, vol.11
, pp. 348-353
-
-
Koehl, P.1
-
5
-
-
0034531045
-
Structure comparison and structure patterns
-
Eidhammer,I., Jonassen,I. and Taylor,W.R. (2000) Structure comparison and structure patterns. J. Comput. Biol., 7, 685-716.
-
(2000)
J. Comput. Biol
, vol.7
, pp. 685-716
-
-
Eidhammer, I.1
Jonassen, I.2
Taylor, W.R.3
-
6
-
-
56649103902
-
Searching protein structure databases with DaliLite
-
24
-
Holm,L., Kaariainen,S., Rosenstrom,P. and Schenkel,A. (2008) Searching protein structure databases with DaliLite v.3. Bioinformatics, 24, 2780-2781.
-
(2008)
Bioinformatics
, vol.3
, pp. 2780-2781
-
-
Holm, L.1
Kaariainen, S.2
Rosenstrom, P.3
Schenkel, A.4
-
7
-
-
0028961335
-
SCOP: A structural classification of proteins database for the investigation of sequences and structures
-
Murzin,A.G., Brenner,S.E., Hubbard,T. and Chothia,C. (1995) SCOP: A structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol., 247, 536-540.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 536-540
-
-
Murzin, A.G.1
Brenner, S.E.2
Hubbard, T.3
Chothia, C.4
-
8
-
-
0037246767
-
The CATH database: An extended protein family resource for structural and functional genomics
-
Pearl,F.M., Bennett,C.F., Bray,J.E., Harrison,A.P., Martin,N., Shepherd,A., Sillitoe,I., Thornton,J. and Orengo,C.A. (2003) The CATH database: An extended protein family resource for structural and functional genomics. Nucleic Acids Res., 31, 452-455.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 452-455
-
-
Pearl, F.M.1
Bennett, C.F.2
Bray, J.E.3
Harrison, A.P.4
Martin, N.5
Shepherd, A.6
Sillitoe, I.7
Thornton, J.8
Orengo, C.A.9
-
9
-
-
34447332520
-
Searching for three-dimensional secondary structural patterns in proteins with ProSMoS
-
Shi,S., Zhong,Y., Majumdar,I., Sri Krishna,S. and Grishin,N.V. (2007) Searching for three-dimensional secondary structural patterns in proteins with ProSMoS. Bioinformatics, 23, 1331-1338.
-
(2007)
Bioinformatics
, vol.23
, pp. 1331-1338
-
-
Shi, S.1
Zhong, Y.2
Majumdar, I.3
Sri Krishna, S.4
Grishin, N.V.5
-
10
-
-
38549153238
-
Data growth and its impact on the SCOP database: New developments
-
Andreeva,A., Howorth,D., Chandonia,J.M., Brenner,S.E., Hubbard,T.J., Chothia,C. and Murzin,A.G. (2008) Data growth and its impact on the SCOP database: New developments. Nucleic Acids Res., 36, D419-425.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Andreeva, A.1
Howorth, D.2
Chandonia, J.M.3
Brenner, S.E.4
Hubbard, T.J.5
Chothia, C.6
Murzin, A.G.7
-
11
-
-
0031991297
-
Structural classification of alphabetabeta and betabetaalpha supersecondary structure units in proteins
-
Boutonnet,N.S., Kajava,A.V. and Rooman,M.J. (1998) Structural classification of alphabetabeta and betabetaalpha supersecondary structure units in proteins. Proteins, 30, 193-212.
-
(1998)
Proteins
, vol.30
, pp. 193-212
-
-
Boutonnet, N.S.1
Kajava, A.V.2
Rooman, M.J.3
-
12
-
-
33747079562
-
Secondary structure spatial conformation footprint: A novel method for fast protein structure comparison and classification
-
Zotenko,E., O'Leary,D.P. and Przytycka,T.M. (2006) Secondary structure spatial conformation footprint: A novel method for fast protein structure comparison and classification. BMC Struct. Biol., 6 12.
-
(2006)
BMC Struct. Biol
, vol.6
, pp. 12
-
-
Zotenko, E.1
O'Leary, D.P.2
Przytycka, T.M.3
-
13
-
-
19544395050
-
Protein structure topological comparison, discovery and matching service
-
Torrance,G.M., Gilbert,D.R., Michalopoulos,I. and Westhead,D.W. (2005) Protein structure topological comparison, discovery and matching service. Bioinformatics, 21, 2537-2538.
-
(2005)
Bioinformatics
, vol.21
, pp. 2537-2538
-
-
Torrance, G.M.1
Gilbert, D.R.2
Michalopoulos, I.3
Westhead, D.W.4
-
14
-
-
13444307044
-
Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions
-
Krissinel,E. and Henrick,K. (2004) Secondary-structure matching (SSM), a new tool for fast protein structure alignment in three dimensions. Acta Crystallogr. D. Biol. Crystallogr., 60, 2256-2268.
-
(2004)
Acta Crystallogr. D. Biol. Crystallogr
, vol.60
, pp. 2256-2268
-
-
Krissinel, E.1
Henrick, K.2
-
15
-
-
40049088786
-
Structural search and retrieval using a tableau representation of protein folding patterns
-
Konagurthu,A.S., Stuckey,P.J. and Lesk,A.M. (2008) Structural search and retrieval using a tableau representation of protein folding patterns. Bioinformatics, 24, 645-651.
-
(2008)
Bioinformatics
, vol.24
, pp. 645-651
-
-
Konagurthu, A.S.1
Stuckey, P.J.2
Lesk, A.M.3
-
16
-
-
33847076452
-
Contact patterns between helices and strands of sheet define protein folding patterns
-
Kamat,A.P. and Lesk,A.M. (2007) Contact patterns between helices and strands of sheet define protein folding patterns. Proteins, 66 869-876.
-
(2007)
Proteins
, vol.66
, pp. 869-876
-
-
Kamat, A.P.1
Lesk, A.M.2
-
17
-
-
25444533291
-
PALSSE: A program to delineate linear secondary structural elements from protein structures
-
Majumdar,I., Krishna,S.S. and Grishin,N.V. (2005) PALSSE: A program to delineate linear secondary structural elements from protein structures. BMC Bioinformatics, 6, 202.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 202
-
-
Majumdar, I.1
Krishna, S.S.2
Grishin, N.V.3
-
18
-
-
0030239753
-
Algorithms for finding the axis of a helix: Fast rotational and parametric least-squares methods
-
Christopher,J.A., Swanson,R. and Baldwin,T.O. (1996) Algorithms for finding the axis of a helix: Fast rotational and parametric least-squares methods. Comput. Chem., 20, 339-345.
-
(1996)
Comput. Chem
, vol.20
, pp. 339-345
-
-
Christopher, J.A.1
Swanson, R.2
Baldwin, T.O.3
-
19
-
-
0037265212
-
The CATH domain structure database
-
Orengo,C.A., Pearl,F.M. and Thornton,J.M. (2003) The CATH domain structure database. Methods Biochem. Anal., 44, 249-271.
-
(2003)
Methods Biochem. Anal
, vol.44
, pp. 249-271
-
-
Orengo, C.A.1
Pearl, F.M.2
Thornton, J.M.3
-
20
-
-
38849088665
-
Bacterial polysaccharide co-polymerases share a common framework for control of polymer length
-
Tocilj,A., Munger,C., Proteau,A., Morona,R., Purins,L., Ajamian,E., Wagner,J., Papadopoulos,M., Van Den Bosch,L., Rubinstein,J.L. et al. (2008) Bacterial polysaccharide co-polymerases share a common framework for control of polymer length. Nat. Struct. Mol. Biol., 15, 130-138.
-
(2008)
Nat. Struct. Mol. Biol
, vol.15
, pp. 130-138
-
-
Tocilj, A.1
Munger, C.2
Proteau, A.3
Morona, R.4
Purins, L.5
Ajamian, E.6
Wagner, J.7
Papadopoulos, M.8
Van Den Bosch, L.9
Rubinstein, J.L.10
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