-
1
-
-
0034841844
-
The tandem affinity purification (TAP) method: A general procedure of protein complex purification
-
DOI 10.1006/meth.2001.1183
-
Puig, O., Caspary, F., Rigaut, G., Rutz, B., Bouveret, E., Bragado-Nilsson, E., Wilm, M., and Seraphin, B. (2001) The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods 24, 218-229. (Pubitemid 32846428)
-
(2001)
Methods
, vol.24
, Issue.3
, pp. 218-229
-
-
Puig, O.1
Caspary, F.2
Rigaut, G.3
Rutz, B.4
Bouveret, E.5
Bragado-Nilsson, E.6
Wilm, M.7
Seraphin, B.8
-
2
-
-
0032828715
-
A generic protein purification method for protein complex characterization and proteome exploration
-
DOI 10.1038/13732
-
Rigaut, G., Shevchenko, A., Rutz, B., Wilm, M., Mann, M., and Seraphin, B. (1999) A generic protein purification method for protein complex characterization and proteome exploration. Nat. Biotech. 17, 1030-1032. (Pubitemid 29474865)
-
(1999)
Nature Biotechnology
, vol.17
, Issue.10
, pp. 1030-1032
-
-
Rigaut, G.1
Shevchenko, A.2
Rutz, B.3
Wilm, M.4
Mann, M.5
Seraphin, B.6
-
3
-
-
0142215475
-
Global analysis of protein expression in yeast
-
DOI 10.1038/nature02046
-
Ghaemmaghami, S., Huh, W.-K., Bower, K., Howson, R.W., Belle, A., Dephoure, N., O'Shea, E.K., and Weissman, J.S. (2003) Global analysis of protein expression in yeast. Nature 425, 737-741. (Pubitemid 37314318)
-
(2003)
Nature
, vol.425
, Issue.6959
, pp. 737-741
-
-
Ghaemmaghami, S.1
Huh, W.-K.2
Bower, K.3
Howson, R.W.4
Belle, A.5
Dephoure, N.6
O'Shea, E.K.7
Weissman, J.S.8
-
4
-
-
0037050026
-
Functional organization of the yeast proteome by systematic analysis of protein complexes
-
DOI 10.1038/415141a
-
Gavin, A.C., Bosche, M., Krause, R., Grandi, P., Marzioch, M., Bauer, A., Schultz, J., Rick, J.M., Michon, A.M., Cruciat, C.M., Remor, M., Hofert, C., Schelder, M., Brajenovic, M., Ruffner, H., Merino, A., Hudak, M., Dickson, D., Rudi, T., Gnau, V., Bauch, A., Bastuck, S., Huhse, B., Leutwein, C., Heurtier, M.A., Copley, R.R., Edelmann, A., Querfurth, E., Rybin, V., Drewes, G., Raida, M., Bouwmeester, T., Bork, P., Seraphin, B., Kuster, B., Neubauer, G., and Superti-Furga, G. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415, 141-147. (Pubitemid 34059510)
-
(2002)
Nature
, vol.415
, Issue.6868
, pp. 141-147
-
-
Gavin, A.-C.1
Bosche, M.2
Krause, R.3
Grandi, P.4
Marzioch, M.5
Bauer, A.6
Schultz, J.7
Rick, J.M.8
Michon, A.-M.9
Cruciat, C.-M.10
Remor, M.11
Hofert, C.12
Schelder, M.13
Brajenovic, M.14
Ruffner, H.15
Merino, A.16
Klein, K.17
Hudak, M.18
Dickson, D.19
Rudi, T.20
Gnau, V.21
Bauch, A.22
Bastuck, S.23
Huhse, B.24
Leutwein, C.25
Heurtier, M.-A.26
Copley, R.R.27
Edelmann, A.28
Querfurth, E.29
Rybin, V.30
Drewes, G.31
Raida, M.32
Bouwmeester, T.33
Bork, P.34
Seraphin, B.35
Kuster, B.36
Neubauer, G.37
Superti-Furga, G.38
more..
-
5
-
-
33644555054
-
Proteome survey reveals modularity of the yeast cell machinery
-
Gavin, A.C., Aloy, P., Grandi, P., Krause, R., Boesche, M., Marzioch, M., Rau, C., Jensen, L.J., Bastuck, S., Dumpelfeld, B., Edelmann, A., Heurtier, M.A., Hoffman, V., Hoefert, C., Klein, K., Hudak, M., Michon, A.M., Schelder, M., Schirle, M., Remor, M., Rudi, T., Hooper, S., Bauer, A., Bouwmeester, T., Casari, G., Drewes, G., Neubauer, G., Rick, J.M., Kuster, B., Bork, P., Russell, R.B., and Superti-Furga, G. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440, 631-636.
-
(2006)
Nature
, vol.440
, pp. 631-636
-
-
Gavin, A.C.1
Aloy, P.2
Grandi, P.3
Krause, R.4
Boesche, M.5
Marzioch, M.6
Rau, C.7
Jensen, L.J.8
Bastuck, S.9
Dumpelfeld, B.10
Edelmann, A.11
Heurtier, M.A.12
Hoffman, V.13
Hoefert, C.14
Klein, K.15
Hudak, M.16
Michon, A.M.17
Schelder, M.18
Schirle, M.19
Remor, M.20
Rudi, T.21
Hooper, S.22
Bauer, A.23
Bouwmeester, T.24
Casari, G.25
Drewes, G.26
Neubauer, G.27
Rick, J.M.28
Kuster, B.29
Bork, P.30
Russell, R.B.31
Superti-Furga, G.32
more..
-
6
-
-
33645453254
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
-
Krogan, N.J., Cagney, G., Yu, H., Zhong, G., Guo, X., Ignatchenko, A., Li, J., Pu, S., Datta, N., Tikuisis, A.P., Punna, T., Peregrin-Alvarez, J.M., Shales, M., Zhang, X., Davey, M., Robinson, M.D., Paccanaro, A., Bray, J.E., Sheung, A., Beattie, B., Richards, D.P., Canadien, V., Lalev, A., Mena, F., Wong, P., Starostine, A., Canete, M.M., Vlasblom, J., Wu, S., Orsi, C., Collins, S.R., Chandran, S., Haw, R., Rilstone, J.J., Gandi, K., Thompson, N.J., Musso, G., St Onge, P., Ghanny, S., Lam, M.H., Butland, G., Altaf-Ul, A.M., Kanaya, S., Shilatifard, A., O'Shea, E., Weissman, J.S., Ingles, C.J., Hughes, T.R., Parkinson, J., Gerstein, M., Wodak, S.J., Emili, A., and Greenblatt, J.F. (2006) Global landscape of protein complexes in the yeast Saccharomyces cerevisiae. Nature 440, 637-643.
-
(2006)
Nature
, vol.440
, pp. 637-643
-
-
Krogan, N.J.1
Cagney, G.2
Yu, H.3
Zhong, G.4
Guo, X.5
Ignatchenko, A.6
Li, J.7
Pu, S.8
Datta, N.9
Tikuisis, A.P.10
Punna, T.11
Peregrin-Alvarez, J.M.12
Shales, M.13
Zhang, X.14
Davey, M.15
Robinson, M.D.16
Paccanaro, A.17
Bray, J.E.18
Sheung, A.19
Beattie, B.20
Richards, D.P.21
Canadien, V.22
Lalev, A.23
Mena, F.24
Wong, P.25
Starostine, A.26
Canete, M.M.27
Vlasblom, J.28
Wu, S.29
Orsi, C.30
Collins, S.R.31
Chandran, S.32
Haw, R.33
Rilstone, J.J.34
Gandi, K.35
Thompson, N.J.36
Musso, G.37
St Onge, P.38
Ghanny, S.39
Lam, M.H.40
Butland, G.41
Altaf-Ul, A.M.42
Kanaya, S.43
Shilatifard, A.44
O'Shea, E.45
Weissman, J.S.46
Ingles, C.J.47
Hughes, T.R.48
Parkinson, J.49
Gerstein, M.50
Wodak, S.J.51
Emili, A.52
Greenblatt, J.F.53
more..
-
7
-
-
34047202181
-
Deciphering protein-protein interactions. Part I. Experimental techniques and databases
-
DOI 10.1371/journal.pcbi.0030042
-
Shoemaker, B.A., and Panchenko, A.R. (2007) Deciphering protein-protein interactions. Part I. Experimental Techniques and Databases. PLoS Computational Biol. 3, 0337-0344. (Pubitemid 46535728)
-
(2007)
PLoS Computational Biology
, vol.3
, Issue.3
, pp. 0337-0344
-
-
Shoemaker, B.A.1
Panchenko, A.R.2
-
8
-
-
0034628508
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae
-
DOI 10.1038/35001009
-
Uetz, P., Giot, L., Cagney, G., Mansfield, T.A., Judson, R.S., Knight, J.R., Lockshon, D., Narayan, V., Srinivasan, M., Pochart, P., Qureshi-Emili, A., Li, Y., Godwin, B., Conover, D., Kalbfleisch, T., Vijayadamodar, G., Yang, M., Johnston, M., Fields, S., and Rothberg, J.M. (2000) A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae. Nature 403, 623-627. (Pubitemid 30103994)
-
(2000)
Nature
, vol.403
, Issue.6770
, pp. 623-627
-
-
Uetz, P.1
Glot, L.2
Cagney, G.3
Mansfield, T.A.4
Judson, R.S.5
Knight, J.R.6
Lockshon, D.7
Narayan, V.8
Srinivasan, M.9
Pochart, P.10
Qureshi-Emlli, A.11
Li, Y.12
Godwin, B.13
Conover, D.14
Kalbfleisch, T.15
Vijayadamodar, G.16
Yang, M.17
Johnston, M.18
Fields, S.19
Rothberg, J.M.20
more..
-
9
-
-
0035836765
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome
-
DOI 10.1073/pnas.061034498
-
Ito, T., Chiba, T., Ozawa, R., Yoshida, M., Hattori, M., and Sakaki, Y. (2001) A comprehensive two-hybrid analysis to explore the yeast protein interactome. Proc. Natl. Acad. Sci. USA 98, 4569-4574. (Pubitemid 32295017)
-
(2001)
Proceedings of the National Academy of Sciences of the United States of America
, vol.98
, Issue.8
, pp. 4569-4574
-
-
Ito, T.1
Chiba, T.2
Ozawa, R.3
Yoshida, M.4
Hattori, M.5
Sakaki, Y.6
-
10
-
-
2442438994
-
Tandem immunoaffinity purification of protein complexes from Caenorhabditis elegans
-
Polanowska, J., Martin, J.S., Fisher, R., Scopa, T., Rae, I., and Boulton, S.J. (2004) Tandem immunoaffinity purification of protein complexes from Caenorhabditis elegans. Biotechniques 36, 778-780.
-
(2004)
Biotechniques
, vol.36
, pp. 778-780
-
-
Polanowska, J.1
Martin, J.S.2
Fisher, R.3
Scopa, T.4
Rae, I.5
Boulton, S.J.6
-
11
-
-
14644444197
-
Analyzing protein complexes in Drosophila with tandem affinity purification-mass spectrometry
-
DOI 10.1002/dvdy.20272
-
Veraksa, A., Bauer, A., and Tsakonas, S.A. (2005) Analyzing protein complexes in Drosophila with tandem affinity purification-mass spectrometry. Dev. Dyn 232, 827-834. (Pubitemid 40315300)
-
(2005)
Developmental Dynamics
, vol.232
, Issue.3
, pp. 827-834
-
-
Veraksa, A.1
Bauer, A.2
Artavanis-Tsakonas, S.3
-
12
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
DOI 10.1038/nature03239
-
Butland, G., Peregrín-Alvarez, J.M., Li, J., Yang, W., Yang, X., Canadien, V., Starostine, A., Richards, D., Beattie, B., Krogan, N., Davey, M., Parkinson, J., Greenblatt, J., and Emili, A. (2005) Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 433, 531-537. (Pubitemid 40204311)
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
13
-
-
34548827578
-
An optimized protocol for protein purification in cultured mammalian cells using a tandem affinity purification approach
-
Tsai, A., and Carstens, R.P. (2006) An optimized protocol for protein purification in cultured mammalian cells using a tandem affinity purification approach. Nat. Protoc. 1, 2820-2827.
-
(2006)
Nat. Protoc.
, vol.1
, pp. 2820-2827
-
-
Tsai, A.1
Carstens, R.P.2
-
14
-
-
1842556785
-
Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system
-
Knuesel, M., Wan, Y., Xiao, Z., Holinger, E., Lowe, N., Wang, W., and Liu, X. (2003) Identification of novel protein-protein interactions using a versatile mammalian tandem affinity purification expression system. Mol. Cell Proteomics 2, 1225-1233.
-
(2003)
Mol. Cell Proteomics
, vol.2
, pp. 1225-1233
-
-
Knuesel, M.1
Wan, Y.2
Xiao, Z.3
Holinger, E.4
Lowe, N.5
Wang, W.6
Liu, X.7
-
15
-
-
33646261158
-
Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp PCC6803 and Arabidopsis thaliana
-
Brown, A.P., Affleck, V., Fawcett, T., and Slabas, A.R. (2006) Tandem affinity purification tagging of fatty acid biosynthetic enzymes in Synechocystis sp. PCC6803 and Arabidopsis thaliana. J. Exp. Bot. 57, 1563-1571.
-
(2006)
J. Exp. Bot.
, vol.57
, pp. 1563-1571
-
-
Brown, A.P.1
Affleck, V.2
Fawcett, T.3
Slabas, A.R.4
-
16
-
-
0034628487
-
Guilt by association goes global
-
Oliver, S.G. (2000) Guilt by association goes global. Nature 403, 601-603.
-
(2000)
Nature
, vol.403
, pp. 601-603
-
-
Oliver, S.G.1
-
17
-
-
34147121646
-
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
-
DOI 10.1074/mcp.M600381-MCP200
-
Collins, S.R., Kemmeren, P., Zhao, X.C., Greenblatt, J.F., Spencer, F., Holstege, F.C., Weissman, J.S., and Krogan, N.J. (2007) Towards a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol. Cell. Proteomics 6, 439-450. (Pubitemid 46554539)
-
(2007)
Molecular and Cellular Proteomics
, vol.6
, Issue.3
, pp. 439-450
-
-
Collins, S.R.1
Kemmeren, P.2
Zhao, X.-C.3
Greenblatt, J.F.4
Spencer, F.5
Hoolstege, F.C.P.6
Weissman, J.S.7
Krogan, N.J.8
-
18
-
-
33947730844
-
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae
-
DOI 10.1002/pmic.200600636
-
Pu, S., Vasblom, J., Emili, A., Greenblatt, J., and Wodak, S.J. (2007) Identifying functional modules in the physical interactome of Saccharomyces cerevisiae. Proteomics 7, 944-960. (Pubitemid 46506741)
-
(2007)
Proteomics
, vol.7
, Issue.6
, pp. 944-960
-
-
Pu, S.1
Vlasblom, J.2
Emili, A.3
Greenblatt, J.4
Wodak, S.J.5
-
19
-
-
0029142564
-
Overexpression of integral membrane proteins for structural studies
-
Grisshammer, R., and Tate, C.G. (1995) Overexpression of integral membrane proteins for structural studies. Q. Rev. Biophys. 28, 315-422.
-
(1995)
Q. Rev. Biophys.
, vol.28
, pp. 315-422
-
-
Grisshammer, R.1
Tate, C.G.2
-
20
-
-
0037391134
-
Membrane protein structural biology: The high throughput challenge
-
DOI 10.1016/S1047-8477(03)00045-5
-
Loll, P.J. (2003) Membrane protein structural biology: the high throughput challenge. J. Struct. Biol. 142, 144-153. (Pubitemid 36457896)
-
(2003)
Journal of Structural Biology
, vol.142
, Issue.1
, pp. 144-153
-
-
Loll, P.J.1
-
21
-
-
0030298385
-
Heterologous expression of G-protein-coupled receptors
-
DOI 10.1016/0167-7799(96)10059-7
-
Tate, C.G., and Grisshammer, R. (1996) Heterologous expression of G-protein-coupled receptors. Trends Biotechnol. 14, 426-430. (Pubitemid 26365981)
-
(1996)
Trends in Biotechnology
, vol.14
, Issue.11
, pp. 426-430
-
-
Tate, C.G.1
Grisshammer, R.2
-
22
-
-
21244484717
-
High-throughput production of prokaryotic membrane proteins
-
DOI 10.1007/s10969-005-1363-5
-
Dobrovetsky, E., Lu, M.L., Broza, R.A., Khutoreskaya, G., Bray, J.E., Savchenko, A., Arrowsmith, C.H., Edwards, A.M., and Koth, C.M. (2005) High-throughput production of prokaryotic membrane proteins. J. Struct. Funct. Genomics 6, 33-50. (Pubitemid 40898074)
-
(2005)
Journal of Structural and Functional Genomics
, vol.6
, Issue.1
, pp. 33-50
-
-
Dobrovetsky, E.1
Ming, L.L.2
Andorn-Broza, R.3
Khutoreskaya, G.4
Bray, J.E.5
Savchenko, A.6
Arrowsmith, C.H.7
Edwards, A.M.8
Koth, C.M.9
-
23
-
-
0000857494
-
An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
-
Eng, J.K., McCormack, A.L., and Yates, J.R. III (1994) An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database. J. Am. Soc. Mass Spectrom. 5, 976-989.
-
(1994)
J. Am. Soc. Mass Spectrom.
, vol.5
, pp. 976-989
-
-
Eng, J.K.1
McCormack, A.L.2
Yates Iii, J.R.3
-
24
-
-
0141585549
-
PRISM, a generic large scale proteomic investigation strategy for mammals
-
Kislinger, T., Rahman, K., Radulovic, D., Cox, B., Rossant, J., and Emili, A. (2003) PRISM, a generic large scale proteomic investigation strategy for mammals. Mol. Cell Proteomics 2, 96-106.
-
(2003)
Mol. Cell Proteomics
, vol.2
, pp. 96-106
-
-
Kislinger, T.1
Rahman, K.2
Radulovic, D.3
Cox, B.4
Rossant, J.5
Emili, A.6
|